View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13908_high_6 (Length: 425)
Name: NF13908_high_6
Description: NF13908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13908_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 16 - 407
Target Start/End: Complemental strand, 16281801 - 16281399
Alignment:
| Q |
16 |
atgaaaatctaacagtaacatacgaagatcaacacaaaatatacgcaaatatcaaaacgcatcaactcttcattggagaagcaaaacgtgaactcataaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16281801 |
atgaaaatctaacagtaacatacgaaaatcaacacaaaatatacgcaaagatcaaaacgcatcaactcttcattggagaagcaaaacgtgaactcataaa |
16281702 |
T |
|
| Q |
116 |
ctaacctcgcaattttgaaattcggcaacgcaatcaaaaattgaaacacgtaaatcacatagaatctcaattttcaagtgaaatgaaaatgctaacctca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16281701 |
ctaacctcgcaattttgaaattcggcaacgcaatcaaaaattcaaacacgtaaatcacatagaatctcaattttcaagtgaaatgaaaatgctaacctca |
16281602 |
T |
|
| Q |
216 |
cctcaagtgaaaatcaac-----------acaagaatctaaatacataaaatcttcatcagagaaggaaaacgtgaactgaaaatcgaaactaagctcac |
304 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16281601 |
cctcaagtgaaaatcaacacaaaatctacacaagaatctaaatacataaaatcttcatcagagaaggaaaacgtgaactgaaaatcgaaactaagctcac |
16281502 |
T |
|
| Q |
305 |
aattttcaaagccggcgacacagtcaaaaattcaaacacgtaaagcatatagaatcacaattttcagagtaaaatgaaatgctaacagtaaccaacgaaa |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16281501 |
aattttcaaagccggcgacacagtcaaaaattcaaacacgtaaagcacatagaatcacaattgtcagagtaaaatgaaatgctaacagtaaccaacgaaa |
16281402 |
T |
|
| Q |
405 |
atc |
407 |
Q |
| |
|
||| |
|
|
| T |
16281401 |
atc |
16281399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 385
Target Start/End: Complemental strand, 16282959 - 16282874
Alignment:
| Q |
300 |
ctcacaattttcaaagccggcgacacagtcaaaaattcaaacacgtaaagcatatagaatcacaattttcagagtaaaatgaaatg |
385 |
Q |
| |
|
||||||||||| ||| |||| ||||| ||||| ||||||| ||| |||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
16282959 |
ctcacaattttaaaattcggcaacacaatcaaatattcaaaaacgacgagcacatagaatctcaattttcagagtaaaatgaaatg |
16282874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 16282963 - 16282876
Alignment:
| Q |
117 |
taacctcgcaattttgaaattcggcaacgcaatcaaaaattgaaacacgtaaatcacatagaatctcaattttca-agtgaaatgaaa |
203 |
Q |
| |
|
||||||| ||||||| |||||||||||| |||||||| ||| ||| ||| | ||||||||||||||||||||| ||| |||||||| |
|
|
| T |
16282963 |
taacctcacaattttaaaattcggcaacacaatcaaatattcaaaaacgacgagcacatagaatctcaattttcagagtaaaatgaaa |
16282876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 396
Target Start/End: Complemental strand, 16282448 - 16282405
Alignment:
| Q |
353 |
atagaatcacaattttcagagtaaaatgaaatgctaacagtaac |
396 |
Q |
| |
|
|||||||| ||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
16282448 |
atagaatctcaattttcagagtgaaatgtaatgctaacagtaac |
16282405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 16283861 - 16283802
Alignment:
| Q |
77 |
tcaactcttcattggagaagcaaaacgtgaactcataaactaacctcgcaattttgaaattc |
138 |
Q |
| |
|
|||| |||||||||||||| |||||| |||||| |||||||||||| ||||||||| |||| |
|
|
| T |
16283861 |
tcaattcttcattggagaatcaaaacatgaact--taaactaacctcacaattttgatattc |
16283802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 380
Target Start/End: Complemental strand, 16282053 - 16282021
Alignment:
| Q |
348 |
agcatatagaatcacaattttcagagtaaaatg |
380 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
16282053 |
agcacatagaatcacaattttcagagtaaaatg |
16282021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University