View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13908_low_12 (Length: 292)
Name: NF13908_low_12
Description: NF13908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13908_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 51437414 - 51437633
Alignment:
| Q |
20 |
atttgaccctcttaaattagattaaacaaagatctttatcgaatgccaaaagannnnnnnatctaaaaaatattcttaaaatcataatcctaatcctaat |
119 |
Q |
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| T |
51437414 |
atttgaccctcttaaattagactaaacaaagatctttatcgaatgccaaaagatttttttatctaaaaaatatttttaaaatcataatcctaatcctaat |
51437513 |
T |
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| Q |
120 |
cctaattagattagatacagtcatttaaga-ccaaattaattatacaaggaataaaagtacggaaaaatggaaatgttttttgttttgtaatttgaaaaa |
218 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51437514 |
cctaattagattagatacagtcctttaagacccaaattaattatacaaggaataaaagtac-gaaaaatggaaatgttttttgttttgtaatttgaaaaa |
51437612 |
T |
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| Q |
219 |
acagagtagttcttctctctc |
239 |
Q |
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|||||||||||| |||||||| |
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| T |
51437613 |
acagagtagttcctctctctc |
51437633 |
T |
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