View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13908_low_15 (Length: 221)
Name: NF13908_low_15
Description: NF13908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13908_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 40888968 - 40889155
Alignment:
| Q |
17 |
atgaacaccgccaaaaatcagcccaatcaaacgatgaacgaaaccgtagtcgcgattcttaggcttccatgaattttacagaaaagtggttgatagatga |
116 |
Q |
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| T |
40888968 |
atgaacaccgccaaaaatcagcccaatcaaactatcaacgaaaccgtagtcgcgattcttaggcttccatgaattttacagaaaagtggttgatagatga |
40889067 |
T |
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| Q |
117 |
atacttaaaggacttagaaagtaatttggatgaacaagagatgacaatgggattaagggtgtaatgcgtgaatgattagcttgagagc |
204 |
Q |
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| T |
40889068 |
atacttaaaggactaagaaagtaatttggatgaacaagagatgacaatgggattaagggtgtgatgcgtgaatgattagcttgagagc |
40889155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 97 - 202
Target Start/End: Complemental strand, 24422911 - 24422807
Alignment:
| Q |
97 |
gaaaagtggttgatagatgaatacttaaaggacttagaaagtaatttggatgaacaagagatgacaatgggattaagggtgtaatgcgtgaatgattagc |
196 |
Q |
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|||||||||||| ||||| |||| |||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||| ||| |||||||||| | |
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| T |
24422911 |
gaaaagtggttgctagatcaataattaaagaacttagaaagtaatttggatgaacaagagatgatgatggaattaa-ggtgtgatgtatgaatgattaac |
24422813 |
T |
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| Q |
197 |
ttgaga |
202 |
Q |
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|||||| |
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| T |
24422812 |
ttgaga |
24422807 |
T |
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