View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13908_low_2 (Length: 796)
Name: NF13908_low_2
Description: NF13908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13908_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 742; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 742; E-Value: 0
Query Start/End: Original strand, 6 - 776
Target Start/End: Complemental strand, 43360686 - 43359914
Alignment:
| Q |
6 |
cacagagcagaagtcaccgtaacctctttaattgtgcttcagcaggtaattctctcgtgttctgaaattttatcttgttaatttcagtagttattaggca |
105 |
Q |
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| T |
43360686 |
cacagagcagaagtcaccgtaacctctttaattgtgcttcagcaggtaattctctcgtgttctgaaattttatcttgttactttcagtagttattaggca |
43360587 |
T |
|
| Q |
106 |
gtacacaatcattccccttgagaaataaactactaatttacctcctaatactaatttacaccgattactttgagaaatcaactactaatataatctctgt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43360586 |
gtacacaatcattccccttgagaaataaactactaatttacctcctaatactaatttacaccgattactttgagaaatcaactactaatataatctctgt |
43360487 |
T |
|
| Q |
206 |
ccatgcttttgcgtcaaagaggtcatccattaaatcataaattagcacatgagaaacactaatgtacaatattcactcttctgcactgagcatacataga |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43360486 |
ccatgcttttgcgtcaaagaggtcatccattaaatcataaattagcacatgagaaacactaatgtacaatattcactcttctgcactgagcatacataga |
43360387 |
T |
|
| Q |
306 |
atatgaatttagcatacaacaacgtaactattgaaaaatggacaaacaaggattttattgaagtcataaacaatttataaaacaggtctacaaatttaag |
405 |
Q |
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| T |
43360386 |
atatgaatttagcatacaacaacgtaactattgaaaaatggacaaacaaggattttattgaagtcataaacaatttataaaacaggtctacaaatttaag |
43360287 |
T |
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| Q |
406 |
tataatatttccataacctatgcaacaagatagagtttgtgatcatcaaggttcacaattcaaaccaacaaatctagtagttgaattgtcgaagttaatc |
505 |
Q |
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| T |
43360286 |
tataatatttccataacctatgcaacaagatagagtttgtgatcatcaaggttcacaattcaaaccaacaaatctagtagttgaattgtcgaagttaatc |
43360187 |
T |
|
| Q |
506 |
agagagagactccttctaatgtcacttgaacacatgaaaaataagttcacatgtaggagaggcctttgagc--ataaggatacttctctttcttttttga |
603 |
Q |
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| T |
43360186 |
agagagggactccttctaatgtcacttgaacacatgaaaaataagttcacatgtaggagaggcctttgagcatataaggatacttctctttcttttttga |
43360087 |
T |
|
| Q |
604 |
ggctatcacagcaacaaattttcatagtttgcaaaactcttgcattattaagaatgtatgttactaactgaacctcaccatgttggcctctgaagtacca |
703 |
Q |
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| T |
43360086 |
ggctatcacagcaacaaattttcatagtttgcaaaactcttgcattattaagaatgtatgttgctaactgaacctcaccatgttggcctctgaagtacca |
43359987 |
T |
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| Q |
704 |
cagtgtgcaagttttaaggtgtaatgaaatgcactgcggaacagatgcagggtctacccaattttcctggtca |
776 |
Q |
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| T |
43359986 |
aagtgtgcaagttttaaggtgtaatgaaatgcaccgcggaacagatgcagggtctacccaattttcctggtca |
43359914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 43362768 - 43362688
Alignment:
| Q |
203 |
tgtccatgcttttgcgtcaaagaggtcatccattaaatcataaattagcacatgagaaacactaatgtacaatattcactct |
284 |
Q |
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| T |
43362768 |
tgtccatgcttttgcgtcaaagaggtcatgcatcaaatta-aatttagcacatgagaaacacaaatgtacaactttcactct |
43362688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 17637603 - 17637674
Alignment:
| Q |
160 |
tttacaccgattactttgagaaatcaactactaatataatctctgtccatgcttttgcgtcaaagaggtcat |
231 |
Q |
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| T |
17637603 |
tttacacctgttcctttgagaaatcaactactgatttaatctttgtccatacttttgggtcaaagaggtcat |
17637674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 540 - 649
Target Start/End: Complemental strand, 43362480 - 43362372
Alignment:
| Q |
540 |
tgaaaaataagttcacatgtaggagaggcctttgagcataaggatacttctctttcttttttgaggctatcacagcaacaaattttcatagtttgcaaaa |
639 |
Q |
| |
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|||| ||||| ||||||||||||||||||| ||| |||||||| | |||||||||| |||||| |||| |||| | |||| ||| | |||||||| |
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| T |
43362480 |
tgaataataacttcacatgtaggagaggcccttggacataaggacaattctctttctagtttgagttcgtcactgcaatagatttccat-ggttgcaaaa |
43362382 |
T |
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| Q |
640 |
ctcttgcatt |
649 |
Q |
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| T |
43362381 |
ctcttgcatt |
43362372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 274
Target Start/End: Original strand, 49432331 - 49432368
Alignment:
| Q |
237 |
aaatcataaattagcacatgagaaacactaatgtacaa |
274 |
Q |
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| T |
49432331 |
aaatcataatttagcacatgaaaaacactaatgtacaa |
49432368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 709 - 746
Target Start/End: Original strand, 1333250 - 1333287
Alignment:
| Q |
709 |
tgcaagttttaaggtgtaatgaaatgcactgcggaaca |
746 |
Q |
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| T |
1333250 |
tgcaagttgtaaggtgtaatgaaaggcactgcggaaca |
1333287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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