View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13908_low_3 (Length: 571)
Name: NF13908_low_3
Description: NF13908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13908_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 12 - 349
Target Start/End: Original strand, 18893541 - 18893874
Alignment:
| Q |
12 |
atgaatctcgaatttctcgaataactagagaccttgatgctgatccattcttaagagcagccatatcaacaacagcaagactagcatattttgtttccaa |
111 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18893541 |
atgaatctcgaatttcttgaataacacgagaccttgatgctgagccattcttaagagcagccatatcaacaacagcaagattagcatattttgtttccaa |
18893640 |
T |
|
| Q |
112 |
atttggtctatgcatgtttggaattacaaaattttgagggacatgagagatactcttctcttgagcattgtctaaagtatagaatgaacttaggttttca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18893641 |
atttggtctatgcatgtttggaattacaaaattttgagggacatgagagatactcttctcttgagcattgtctaaagtatagaatgaacttaggttttca |
18893740 |
T |
|
| Q |
212 |
ccattctccatttgtgaaattgtgattcacaaatgaagnnnnnnntatataacatgtctctaaactacgtacgtagggtttatataacacaagtttgaag |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18893741 |
ccattctccatttgtgaaattgtgattcacaaatgaagaaaaaaatatataacatgtctctaaac----tacgtagggtttatataacacaagtttgaag |
18893836 |
T |
|
| Q |
312 |
ccaaaacttaatgaccaagttatatatgctttgaattg |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18893837 |
ccaaaacttaatgaccaagttatatatgctttgaattg |
18893874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 346 - 563
Target Start/End: Original strand, 18893895 - 18894111
Alignment:
| Q |
346 |
attgtgataatctattataagagctagaatacaagaagtgacttttgtaataaattgatatgaatttggtccatgttgaactagctagagaacataaata |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18893895 |
attgtgataatctattataagagctagaatacaagaagtgacttttgtaataaattgatatgaatttggtccatgttgaactagctagagaacattcata |
18893994 |
T |
|
| Q |
446 |
gttctgtcaaatactatgcaattgggccaaaaccacttagcccagaatgttgctaaaaccaaagcatgaatttagtgagctcatagtggtatttagatcg |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18893995 |
gttctgtcaaatactatgcaattgggccaaaaccacttagcccagaatgttgctaaaaccaaagcatgaatttagtgagctcatagtggtatttagatcg |
18894094 |
T |
|
| Q |
546 |
ttgaccaaaaatatgatg |
563 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
18894095 |
-tgaccaaaaatacgatg |
18894111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University