View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13908_low_5 (Length: 498)
Name: NF13908_low_5
Description: NF13908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13908_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 45303941 - 45304396
Alignment:
| Q |
1 |
gtggatgttggtctatgtgaagtcaaattaaagcaaaggtgtgaaggtgagggttgtcttgtttgttttggtggtctctcaatttcatttcatttcatag |
100 |
Q |
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| T |
45303941 |
gtggatgttggtctatgtgaagtcaaattaaagcaaaggtgtgaaggtgagggttgtcttgttt----tggtggtctctaaatttcatttcat-----ag |
45304031 |
T |
|
| Q |
101 |
aaagaagaataatggaatgggggagtgcccaaaagctactgacttgacttgaatgaatatgcacaagccccaaaagcccagctaagtttcataacagcag |
200 |
Q |
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| T |
45304032 |
aaagaagaataatggaatgggggagtgcccaaaagctactgacttgacttgaatgaatatgcacaagccccaaaagcccagctaagtttcataacagcag |
45304131 |
T |
|
| Q |
201 |
ccccgacagaaaggaagtaatgcagcttttaggacccttttcatttcccaacaaattactactacaacgaaaccttttcttttcttttcttacctactat |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45304132 |
ccccgacagaaaggaaggaatgcagcttttaggacccttttcatttcccaacaaattactactacaacgaaaccttttcttttctt-----acctact-- |
45304224 |
T |
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| Q |
301 |
actatggtcctttcttactttcccctatacctagttactttgtgcattactgcatataagttactactttttactagttatctaannnnnnnnnnnnnnn |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45304225 |
---atggtcctttcttactttcccctatacctagttactttgtgcattgctgcatataagttactactttttactagttatctaa----tctctctctct |
45304317 |
T |
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| Q |
401 |
atgcatataatcagtgcttagtgggtggataaagatccttatgattattattccttaaaagactttttggtgattgatt |
479 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45304318 |
atgcatataatcagtgcttagtgggtggataaagatccttatgattattattccttaaaagactttttggtgattgatt |
45304396 |
T |
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