View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13908_low_7 (Length: 406)
Name: NF13908_low_7
Description: NF13908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13908_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 50 - 272
Target Start/End: Original strand, 14774868 - 14775090
Alignment:
| Q |
50 |
aacacttgaataaaattaattactacgaatgcatatcattcttatttaccatttatttttcctaatgattttgactaaatttatttacaacaactctgag |
149 |
Q |
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| T |
14774868 |
aacacttgaataaaattaattactacgaatgcatatcattcttatttaccatttatttttcctaatgattttgactaaatttatttaaaacaattatgag |
14774967 |
T |
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| Q |
150 |
tatattgaaatctgtttcttaccctcaattcttttaaaaacctctcttgcttaatatctctacaactatatatctataaattgactggacaacaaaattg |
249 |
Q |
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| T |
14774968 |
tatattgaaatctgtttcttaccctcaattcttttaaaaacctctcttgcttaatatctctacaactatatatctataaattgactggacaacaaaattg |
14775067 |
T |
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| Q |
250 |
atgttaattcaaataaattaaat |
272 |
Q |
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| T |
14775068 |
atgttaattcaaataaattaaat |
14775090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 313 - 388
Target Start/End: Original strand, 14775131 - 14775206
Alignment:
| Q |
313 |
gttctacttaaaaattcatatcttgaaataaaattttgcagggatcaaataacattcgcagaatatggcaattttg |
388 |
Q |
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| T |
14775131 |
gttctacttaaaaattcatatcttgaaataaaattttgcagggatcaaataacattcgcagaatatggcaattttg |
14775206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 14774730 - 14774778
Alignment:
| Q |
14 |
aatataaagcacttattttttctactcaagcaatagaacacttgaataa |
62 |
Q |
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| T |
14774730 |
aatataaagcacttattttttctactcaagcaatagaacacttgaataa |
14774778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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