View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13908_low_9 (Length: 374)

Name: NF13908_low_9
Description: NF13908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13908_low_9
NF13908_low_9
[»] chr3 (12 HSPs)
chr3 (211-374)||(54850449-54850612)
chr3 (12-162)||(43453439-43453589)
chr3 (23-162)||(14746811-14746949)
chr3 (55-163)||(43454103-43454210)
chr3 (21-162)||(42020793-42020934)
chr3 (23-162)||(14746041-14746180)
chr3 (30-103)||(35982554-35982627)
chr3 (114-162)||(15287567-15287615)
chr3 (111-162)||(16076210-16076261)
chr3 (112-162)||(41419617-41419667)
chr3 (12-72)||(54308966-54309026)
chr3 (52-100)||(41418822-41418869)
[»] chr8 (8 HSPs)
chr8 (7-162)||(36402918-36403073)
chr8 (43-162)||(26132062-26132181)
chr8 (31-158)||(10331470-10331596)
chr8 (24-157)||(10333542-10333674)
chr8 (112-162)||(5434032-5434082)
chr8 (52-164)||(44376641-44376752)
chr8 (112-162)||(36402201-36402251)
chr8 (113-162)||(26847097-26847146)
[»] chr1 (6 HSPs)
chr1 (7-162)||(13416228-13416383)
chr1 (7-164)||(5490509-5490665)
chr1 (30-165)||(31109236-31109371)
chr1 (111-162)||(31116681-31116732)
chr1 (112-159)||(5491334-5491381)
chr1 (115-162)||(26240872-26240919)
[»] chr7 (12 HSPs)
chr7 (7-162)||(24874471-24874626)
chr7 (23-165)||(767133-767275)
chr7 (23-162)||(767875-768014)
chr7 (112-162)||(41965775-41965825)
chr7 (52-162)||(24873751-24873861)
chr7 (21-164)||(27918516-27918660)
chr7 (23-93)||(27917764-27917834)
chr7 (82-160)||(21975693-21975771)
chr7 (115-162)||(18569020-18569067)
chr7 (115-162)||(18652891-18652938)
chr7 (112-162)||(41965112-41965162)
chr7 (114-162)||(42817798-42817846)
[»] chr4 (5 HSPs)
chr4 (7-162)||(21281054-21281209)
chr4 (12-162)||(45140454-45140604)
chr4 (31-162)||(45141060-45141191)
chr4 (112-160)||(53778413-53778461)
chr4 (118-162)||(42792775-42792819)
[»] scaffold0006 (2 HSPs)
scaffold0006 (7-139)||(285903-286035)
scaffold0006 (112-157)||(285183-285228)
[»] chr6 (5 HSPs)
chr6 (21-162)||(10965230-10965371)
chr6 (35-162)||(2138477-2138603)
chr6 (21-162)||(709322-709462)
chr6 (111-162)||(10966377-10966428)
chr6 (52-162)||(8113373-8113482)
[»] chr2 (5 HSPs)
chr2 (55-162)||(7754012-7754119)
chr2 (115-162)||(7754968-7755015)
chr2 (120-162)||(127741-127783)
chr2 (112-162)||(4716871-4716921)
chr2 (114-162)||(44296860-44296908)
[»] chr5 (5 HSPs)
chr5 (113-162)||(23253485-23253534)
chr5 (114-162)||(39466885-39466933)
chr5 (115-163)||(24565572-24565620)
chr5 (115-163)||(24606608-24606656)
chr5 (114-162)||(39937906-39937954)


Alignment Details
Target: chr3 (Bit Score: 156; Significance: 8e-83; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 211 - 374
Target Start/End: Complemental strand, 54850612 - 54850449
Alignment:
Q  211 gaacgtgaaacttgcttgagattgttgatagtggaacgcaaattaactatctgtattctatcagcttcagaaaaatgctccttaaagtcttcccaaacat 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  54850612 gaacgtgaaacttgcttgagattgttgatagtggaacgcaaattaactatctgtattctatcagcttcagaaaaatgctccttaaaatcttcccaaacat 54850513  T
Q  311 caatgatagtatcgtgaaaaataacagtttgtgtaataggttcaaaaactaaatcaatcaaacc 374  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  54850512 caatgatagtatcgtgaaaaataacagtttgcgtaataggttcaaaaactaaatcaatcaaacc 54850449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 162
Target Start/End: Complemental strand, 43453589 - 43453439
Alignment:
Q  12 gaaacaatgttaggataggattgaatgtgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnnnnnnc 111  Q
    ||||| || ||||||||| |||||||||||||| ||||| |||||| || ||||||||| ||||||| | |||||||||||| |||||  ||       |    
T  43453589 gaaaccattttaggatagaattgaatgtgagtagttgtacatgttcccaattttaatttaaataaatttgaaccatctatttaatctattggtatttttc 43453490  T
Q  112 tcgtggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    |||||||||| |||||| |||  |||||||||| |||||||||||||||||    
T  43453489 tcgtggtccagcggtgagggatttaattggaccctcaccctagaatccacc 43453439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 14746811 - 14746949
Alignment:
Q  23 aggataggattgaatgtgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnnnnnnctcgtggtccac 122  Q
    |||||||||||||||||||||| |||||||||||  || |||||||| |||||||| | |||||| ||||| |||||||||        |||||||||||    
T  14746811 aggataggattgaatgtgagtagttgtatatgtttccatttttaattcgaataaatttgaaccatgtatttaatctaacggtgtttttttcgtggtccac 14746910  T
Q  123 cggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    || ||| |||| |||||||||| ||| |||||||||||||    
T  14746911 cgatgagggacttaattggaccctca-cctagaatccacc 14746949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 43454103 - 43454210
Alignment:
Q  55 ttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnnnnnnctcgtggtccaccggtgaaggacctaattggaccttcaccctag 154  Q
    ||||| |||| ||||||||||||||| |||||||||||||||| | |||       |||||||||||| ||||| ||||||||||||||| |||||||||    
T  43454103 ttctctctttgaatttgaataaatctgaaccatctattttatccatcggtgtttt-ctcgtggtccacaggtgagggacctaattggaccctcaccctag 43454201  T
Q  155 aatccaccg 163  Q
    |||||||||    
T  43454202 aatccaccg 43454210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 162
Target Start/End: Original strand, 42020793 - 42020934
Alignment:
Q  21 ttaggataggattgaatgtgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnnnnnnctcgtggtcc 120  Q
    |||||||||||||||||||||||| ||||| |||||  |||| ||  ||| ||||||||| |||||||||||| |||||  ||        ||||| |||    
T  42020793 ttaggataggattgaatgtgagtagttgtacatgtttacactattgcttttaataaatctgaaccatctatttaatctattggtatttttttcgtgatcc 42020892  T
Q  121 accggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    ||||| ||  |||||||||||||| |||||||||||| ||||    
T  42020893 accggcgagagacctaattggaccctcaccctagaattcacc 42020934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 14746180 - 14746041
Alignment:
Q  23 aggataggattgaatgtgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnnnnnnctcgtggtccac 122  Q
    |||||| |||| ||||||||||   |||||||||  || ||||||||| ||||||||| | |||||||||| |||||  ||        |||||||||||    
T  14746180 aggataagattaaatgtgagtagccgtatatgtttccatttttaatttaaataaatctgatccatctatttcatctagtggcgtttttttcgtggtccac 14746081  T
Q  123 cggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    ||| || |||  |||||||||| |||||||||||||||||    
T  14746080 cggggagggatttaattggaccctcaccctagaatccacc 14746041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 35982627 - 35982554
Alignment:
Q  30 gattgaatgtgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaacgg 103  Q
    ||||||||||||||| |||||||||||   | |||||||| |||||||||| |||||| ||||| |||||||||    
T  35982627 gattgaatgtgagtagttgtatatgtttctatttttaattcgaataaatctgaaccatgtatttaatctaacgg 35982554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 15287615 - 15287567
Alignment:
Q  114 gtggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    ||||||||||||||| |||| |||||||||| |||||||||||||||||    
T  15287615 gtggtccaccggtgagggacttaattggaccctcaccctagaatccacc 15287567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 16076261 - 16076210
Alignment:
Q  111 ctcgtggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    |||||||||||  ||||| ||||||||||||||| |||||||||||||||||    
T  16076261 ctcgtggtccattggtgagggacctaattggaccctcaccctagaatccacc 16076210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 41419617 - 41419667
Alignment:
Q  112 tcgtggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    ||||||||||||||||| |||||||||||| || |||| ||||||||||||    
T  41419617 tcgtggtccaccggtgagggacctaattggcccctcacactagaatccacc 41419667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 54309026 - 54308966
Alignment:
Q  12 gaaacaatgttaggataggattgaatgtgagtaattgtatatgttctcacttttaatttga 72  Q
    ||||| || ||| |||| ||||||||||||||| ||||| ||||||||| |||||||||||    
T  54309026 gaaaccattttaagatatgattgaatgtgagtagttgtacatgttctcaattttaatttga 54308966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 41418869 - 41418822
Alignment:
Q  52 atgttctcacttttaatttgaataaatcttaaccatctattttatctaa 100  Q
    |||||||| |||||||||||||||||||| |||||| ||||| ||||||    
T  41418869 atgttctc-cttttaatttgaataaatctgaaccatttatttaatctaa 41418822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 6e-56; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 36402918 - 36403073
Alignment:
Q  7 aggtggaaacaatgttaggataggattgaatgtgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnn 106  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |       
T  36402918 aggtggaaaccatgttaggataggattgaatatgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaactgtgt 36403017  T
Q  107 nnnnctcgtggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
        |||||||||||||||||| ||||||||||||||| |||| ||||||||||||    
T  36403018 ttttctcgtggtccaccggtgagggacctaattggaccctcactctagaatccacc 36403073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 43 - 162
Target Start/End: Original strand, 26132062 - 26132181
Alignment:
Q  43 taattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnnnnnnctcgtggtccaccggtgaaggacctaattgga 142  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       ||||||||||||| |||| |||||||||||||    
T  26132062 taattgtatatgttctcacttttaatttcaataaatcttaaccatctattttatctaacggtgtttttctcgtggtccaccagtgagggacctaattgga 26132161  T
Q  143 ccttcaccctagaatccacc 162  Q
    || ||||| || ||||||||    
T  26132162 ccctcaccttaaaatccacc 26132181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 31 - 158
Target Start/End: Complemental strand, 10331596 - 10331470
Alignment:
Q  31 attgaatgtgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnnnnnnctcgtggtccaccggtgaag 130  Q
    ||||||||| |||||||||| ||||||| | |||||||| |||||||||| |||||||||||| ||||||| |       |||||||||||||| |||      
T  10331596 attgaatgtcagtaattgtacatgttcttatttttaatt-gaataaatctgaaccatctatttcatctaacagtttttttctcgtggtccaccgatgaga 10331498  T
Q  131 gacctaattggaccttcaccctagaatc 158  Q
    |||||||||||||| |||||||| ||||    
T  10331497 gacctaattggaccctcaccctataatc 10331470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 10333542 - 10333674
Alignment:
Q  24 ggataggattgaatgtgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnnnnnnctcgtggtccacc 123  Q
    |||||| ||||||||| |||  |||||||| ||| |||||||||||| ||||||||| ||||||||||||||| || | |       ||||||||||||     
T  10333542 ggatagaattgaatgtaagtgcttgtatatattcccacttttaatttaaataaatctaaaccatctattttatttagctg-tgttttctcgtggtccact 10333640  T
Q  124 ggtgaaggacctaattggaccttcaccctagaat 157  Q
    ||||| ||||||||||||||| ||||| ||||||    
T  10333641 ggtgagggacctaattggaccctcaccttagaat 10333674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 5434082 - 5434032
Alignment:
Q  112 tcgtggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  5434082 tcgtggtccaccggtgaaggacttaattggaccctcaccctagaatccacc 5434032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 164
Target Start/End: Complemental strand, 44376752 - 44376641
Alignment:
Q  52 atgttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnnnnnnctcgtggtccaccggtgaaggacctaattggaccttcaccc 151  Q
    |||||||| |||||||||||||||||||| |||||||||||| || ||  ||        ||||||||||||| ||| |||| |||||||||| || |||    
T  44376752 atgttctc-cttttaatttgaataaatctgaaccatctatttaatttattggtatttttttcgtggtccaccgatgagggacgtaattggaccctcgccc 44376654  T
Q  152 tagaatccaccgt 164  Q
    |||||||||||||    
T  44376653 tagaatccaccgt 44376641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 36402251 - 36402201
Alignment:
Q  112 tcgtggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    ||||||||||||||||  ||||||||||||||| |||||||| ||||||||    
T  36402251 tcgtggtccaccggtgtgggacctaattggaccctcaccctaaaatccacc 36402201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 26847146 - 26847097
Alignment:
Q  113 cgtggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    |||||| ||||||||| |||| |||||||||| |||||||||||||||||    
T  26847146 cgtggttcaccggtgagggacttaattggaccctcaccctagaatccacc 26847097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 6e-56; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 13416228 - 13416383
Alignment:
Q  7 aggtggaaacaatgttaggataggattgaatgtgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnn 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||       
T  13416228 aggtggaaaccatgttaggataggattgaatgtgagtaattgtatatgttctcacttttaatttgaatatatcttaaccatctattttatctaacggtgt 13416327  T
Q  107 nnnnctcgtggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
        ||||||||||||||| || ||||||||||||||| ||| |||||||||||||    
T  13416328 ttttctcgtggtccaccggcgagggacctaattggaccctcatcctagaatccacc 13416383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 5490665 - 5490509
Alignment:
Q  7 aggtggaaacaatgttaggataggattgaatgtgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnn 106  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||       
T  5490665 aggtggaaaccatgttaggataggattgaatgtgagtaattgtatatgttcttacttttaatttgaataaatcttaaccatctattttatttaacggtgt 5490566  T
Q  107 nnnnctcgtggtccaccggtgaaggacctaattggaccttcaccctagaatccaccgt 164  Q
        |||||||||||||| |||  |||||||||| ||| ||| |||||||||||||||    
T  5490565 ttttctcgtggtccaccgatgagagacctaattgaaccctca-cctagaatccaccgt 5490509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 30 - 165
Target Start/End: Complemental strand, 31109371 - 31109236
Alignment:
Q  30 gattgaatgtgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnnnnnnctcgtggtccaccggtgaa 129  Q
    ||||||||||||| |  | || |||||| |||||||||||| ||||||||| |||||  | ||| |||||  ||       ||||| ||||||||||||     
T  31109371 gattgaatgtgagcagctctacatgttcccacttttaatttaaataaatctgaaccacttgtttaatctattggtatttttctcgtagtccaccggtgag 31109272  T
Q  130 ggacctaattggaccttcaccctagaatccaccgta 165  Q
    ||||||||||||||| ||||||||||||||||||||    
T  31109271 ggacctaattggaccctcaccctagaatccaccgta 31109236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 31116681 - 31116732
Alignment:
Q  111 ctcgtggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    ||||| |||||||||||| ||||||||||||||| |||||||||||||||||    
T  31116681 ctcgtagtccaccggtgagggacctaattggaccctcaccctagaatccacc 31116732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 5491334 - 5491381
Alignment:
Q  112 tcgtggtccaccggtgaaggacctaattggaccttcaccctagaatcc 159  Q
    ||||||||||||||||| ||||||||||||||| ||| ||||||||||    
T  5491334 tcgtggtccaccggtgagggacctaattggaccctcatcctagaatcc 5491381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 26240872 - 26240919
Alignment:
Q  115 tggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    |||||||||||||| |||| |||||| ||| |||||||||||||||||    
T  26240872 tggtccaccggtgagggacttaattgaaccctcaccctagaatccacc 26240919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 24874471 - 24874626
Alignment:
Q  7 aggtggaaacaatgttaggataggattgaatgtgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnn 106  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||       
T  24874471 aggtggaaaccatgttaggataggattgaatatgagtaattgtatatattctcacatttaatttgaataaatcttaaccatctattttatctaacggtat 24874570  T
Q  107 nnnnctcgtggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
        |||||||||||||| ||| ||||||||||| ||| |||||||||||||||||    
T  24874571 ttttctcgtggtccaccgatgagggacctaattgaaccctcaccctagaatccacc 24874626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 767275 - 767133
Alignment:
Q  23 aggataggattgaatgtgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnnnnnnctcgtggtccac 122  Q
    |||||||||||||||||||||| |||||||||||  || |||||||| |||||||||| |||||| ||||| |||||||||        || || |||||    
T  767275 aggataggattgaatgtgagtagttgtatatgtttccatttttaattcgaataaatctgaaccatgtatttaatctaacggtgtttttttcatgatccac 767176  T
Q  123 cggtgaaggacctaattggaccttcaccctagaatccaccgta 165  Q
    |||||| |||| |||||||||| ||||||||||||||||||||    
T  767175 cggtgagggacttaattggaccctcaccctagaatccaccgta 767133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 767875 - 768014
Alignment:
Q  23 aggataggattgaatgtgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnnnnnnctcgtggtccac 122  Q
    |||||| |||| ||||| |||| ||||||||||| ||| ||||||||| |||||| || | ||||||||||||||||   |        |||||||||||    
T  767875 aggataagattaaatgtaagtagttgtatatgttttcatttttaatttaaataaacctgatccatctattttatctacttgtatttttttcgtggtccac 767974  T
Q  123 cggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    |||||| |||| |||||||||| |||||||| ||||||||    
T  767975 cggtgagggacttaattggaccctcaccctaaaatccacc 768014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 41965775 - 41965825
Alignment:
Q  112 tcgtggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    ||||||||||||||||| |||| |||||||||| |||||||||||||||||    
T  41965775 tcgtggtccaccggtgagggacttaattggaccctcaccctagaatccacc 41965825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 24873861 - 24873751
Alignment:
Q  52 atgttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnnnnnnctcgtggtccaccggtgaaggacctaattggaccttcaccc 151  Q
    |||||||| |||||||||||||||||||| |||||  ||||| |||||  ||        || |||||||| | ||| ||||||||||||||| ||||||    
T  24873861 atgttctcccttttaatttgaataaatctaaaccacttatttaatctattggtgtttttttcatggtccactgatgagggacctaattggaccctcaccc 24873762  T
Q  152 tagaatccacc 162  Q
    |||||||||||    
T  24873761 tagaatccacc 24873751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 27918516 - 27918660
Alignment:
Q  21 ttaggataggattgaatgtgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaacgg-nnnnnnnctcgtggtc 119  Q
    |||||||||||||||||||||||| ||||| || || ||||| ||  ||| ||||||| | |||||||||||| |||||  ||         ||||| ||    
T  27918516 ttaggataggattgaatgtgagtagttgtacatattttcactattgcttttaataaatatgaaccatctatttaatctattggtattttttttcgtgatc 27918615  T
Q  120 caccggtgaaggacctaattggaccttcaccctagaatccaccgt 164  Q
    ||||||||| ||||||||||||||| ||| |||| ||| ||||||    
T  27918616 caccggtgagggacctaattggaccctcatcctaaaattcaccgt 27918660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 27917834 - 27917764
Alignment:
Q  23 aggataggattgaatgtgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattt 93  Q
    |||||| |||||||||||| || ||||||||||||  | ||||||||||||||||||| || ||| |||||    
T  27917834 aggataagattgaatgtgaatagttgtatatgttcctatttttaatttgaataaatctgaagcatgtattt 27917764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 21975771 - 21975693
Alignment:
Q  82 aaccatctattttatctaacggnnnnnnnctcgtggtccaccggtgaaggacctaattggaccttcaccctagaatcca 160  Q
    ||||||||||||||||||||||       || ||||||||||||||| |||||||||| |||| || || |||||||||    
T  21975771 aaccatctattttatctaacggtgtttttcttgtggtccaccggtgagggacctaattagaccctcgccatagaatcca 21975693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 18569020 - 18569067
Alignment:
Q  115 tggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    |||||||||||||| |||  |||| |||||||||||||||||||||||    
T  18569020 tggtccaccggtgagggatttaataggaccttcaccctagaatccacc 18569067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 18652938 - 18652891
Alignment:
Q  115 tggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    |||||||||||||| |||  |||| |||||||||||||||||||||||    
T  18652938 tggtccaccggtgagggatttaataggaccttcaccctagaatccacc 18652891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 41965162 - 41965112
Alignment:
Q  112 tcgtggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    ||||||||||||  ||| |||| |||||||||| |||||||||||||||||    
T  41965162 tcgtggtccaccaatgagggacttaattggaccctcaccctagaatccacc 41965112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 42817846 - 42817798
Alignment:
Q  114 gtggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    ||||||||||| ||| |||| |||||||||| |||||||||||| ||||    
T  42817846 gtggtccaccgatgagggacttaattggaccatcaccctagaattcacc 42817798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 21281054 - 21281209
Alignment:
Q  7 aggtggaaacaatgttaggataggattgaatgtgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnn 106  Q
    |||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       
T  21281054 aggtggaaaccatgttaggataagattgaatgtgtgtaattgtatatgttctcacttttaatttgaataaattttaaccatctattttatctaacggtgt 21281153  T
Q  107 nnnnctcgtggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
        |||||||||||||| ||| ||| ||||||||||| |||||||||||||||||    
T  21281154 ttttctcgtggtccaccgatgagggatctaattggaccctcaccctagaatccacc 21281209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 162
Target Start/End: Complemental strand, 45140604 - 45140454
Alignment:
Q  12 gaaacaatgttaggataggattgaatgtgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnnnnnnc 111  Q
    ||||| || ||||||||||||| |||||||||| ||||| |||||| |||||||||||||||||||||| |||||||||||| || ||   |       |    
T  45140604 gaaaccattttaggataggattaaatgtgagtagttgtacatgttcccacttttaatttgaataaatctgaaccatctatttcatatataagtgtttttc 45140505  T
Q  112 tcgtggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    |||| |||| ||| |||||||| | ||||||||||||||||||||||||||    
T  45140504 tcgttgtccgccgatgaaggacttgattggaccttcaccctagaatccacc 45140454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 162
Target Start/End: Original strand, 45141060 - 45141191
Alignment:
Q  31 attgaatgtgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnnnnnnctcgtggtccaccggtgaag 130  Q
    |||||||||||  | ||| | ||||| || |||||||| ||||||||||| |||||||||||| ||||| ||        ||| ||||||| || ||| |    
T  45141060 attgaatgtgaaaagttgcacatgttatctcttttaatctgaataaatctgaaccatctatttcatctatcgttgtttttctcatggtccatcgatgagg 45141159  T
Q  131 gacctaattggaccttcaccctagaatccacc 162  Q
    || ||||||||||| |||||||||||||||||    
T  45141160 gatctaattggaccctcaccctagaatccacc 45141191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 53778413 - 53778461
Alignment:
Q  112 tcgtggtccaccggtgaaggacctaattggaccttcaccctagaatcca 160  Q
    ||||||||||||||||| |||| ||| |||||| |||||||||||||||    
T  53778413 tcgtggtccaccggtgagggacttaaatggaccctcaccctagaatcca 53778461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 42792819 - 42792775
Alignment:
Q  118 tccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    |||| |||||| |||| |||||||||| |||||||||||||||||    
T  42792819 tccatcggtgagggacttaattggaccctcaccctagaatccacc 42792775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 285903 - 286035
Alignment:
Q  7 aggtggaaacaatgttaggataggattgaatgtgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnn 106  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  285903 aggtggaaaccatgttaggataggattgaatgtgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaacggtgt 286002  T
Q  107 nnnnctcgtggtccaccggtgaaggacctaatt 139  Q
        |||||||||||||||| | ||||||||||    
T  286003 ttttctcgtggtccaccggtaagggacctaatt 286035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 285228 - 285183
Alignment:
Q  112 tcgtggtccaccggtgaaggacctaattggaccttcaccctagaat 157  Q
    ||||||||||||||| | ||||||||||||||| ||||||||||||    
T  285228 tcgtggtccaccggtaagggacctaattggaccctcaccctagaat 285183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 10965371 - 10965230
Alignment:
Q  21 ttaggataggattgaatgtgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnnnnnnctcgtggtcc 120  Q
    |||||||||||||||||||||||| ||||| |||||  |||||||||||| ||||||| | |||||||||||| |||||| ||       ||| ||||||    
T  10965371 ttaggataggattgaatgtgagtagttgtacatgtttccacttttaatttaaataaatttgaaccatctatttaatctaatggtatttttctcatggtcc 10965272  T
Q  121 accggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    |||| |||  ||| ||||||||||||||||||| ||||||||    
T  10965271 accgatgagagacttaattggaccttcaccctaaaatccacc 10965230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 35 - 162
Target Start/End: Complemental strand, 2138603 - 2138477
Alignment:
Q  35 aatgtgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnnnnnnctcgtggtccaccggtgaaggacc 134  Q
    |||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||| || ||  ||       |||||||||||||||||| |||||    
T  2138603 aatgtgagtagttgtacatgtt-tcacttttaatttgaataaatctcaaccatctatttaatttattggtatttttctcgtggtccaccggtgagggacc 2138505  T
Q  135 taattggaccttcaccctagaatccacc 162  Q
    |||||||||| |||||||||||| ||||    
T  2138504 taattggaccctcaccctagaattcacc 2138477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 709462 - 709322
Alignment:
Q  21 ttaggataggattgaatgtgagtaattgtatatgttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnnnnnnctcgtggtcc 120  Q
    |||||||||||||||||||||||| ||||| || || ||| ||||||||||||||||||| |||||||||||| |||||  ||       |||||| |||    
T  709462 ttaggataggattgaatgtgagtagttgtacatatt-tcatttttaatttgaataaatctgaaccatctatttaatctattggtatttttctcgtgatcc 709364  T
Q  121 accggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    | |||||| ||| ||||||||||| ||| |||||||| ||||    
T  709363 atcggtgagggatctaattggaccctcatcctagaattcacc 709322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 10966377 - 10966428
Alignment:
Q  111 ctcgtggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10966377 ctcgtggtccaccggtgagggacctaattggaccttcaccctagaatccacc 10966428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 8113482 - 8113373
Alignment:
Q  52 atgttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnnnnnnctcgtggtccaccggtgaaggacctaattggaccttcaccc 151  Q
    |||||||| |||||||||||||||||| | |||||||||||| || ||  ||        ||||||||||| | ||||||||||||||||||| || |||    
T  8113482 atgttctc-cttttaatttgaataaatttgaaccatctatttaatttattggtattattttcgtggtccacagatgaaggacctaattggaccctcgccc 8113384  T
Q  152 tagaatccacc 162  Q
    |||||||||||    
T  8113383 tagaatccacc 8113373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 162
Target Start/End: Complemental strand, 7754119 - 7754012
Alignment:
Q  55 ttctcacttttaatttgaataaatcttaaccatctattttatctaacggnnnnnnnctcgtggtccaccggtgaaggacctaattggaccttcaccctag 154  Q
    ||||| |||||||||||||||||||| ||| ||||||||||| ||  ||        ||||| |||||||| || ||||||||||||||| |||||||||    
T  7754119 ttctcccttttaatttgaataaatctgaactatctattttatttattggtatttttttcgtgatccaccggggagggacctaattggaccctcaccctag 7754020  T
Q  155 aatccacc 162  Q
    ||||||||    
T  7754019 aatccacc 7754012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 7754968 - 7755015
Alignment:
Q  115 tggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    ||||||||||||||||||| ||||||  || |||||||||||||||||    
T  7754968 tggtccaccggtgaaggacttaattgatccctcaccctagaatccacc 7755015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 127741 - 127783
Alignment:
Q  120 caccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    |||||||||||||| |||||| ||| |||||||||||||||||    
T  127741 caccggtgaaggacttaattgaaccctcaccctagaatccacc 127783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 4716871 - 4716921
Alignment:
Q  112 tcgtggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    |||||||||||| |||||| |  |||||||||| |||||||||||||||||    
T  4716871 tcgtggtccaccagtgaagaatttaattggaccctcaccctagaatccacc 4716921  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 44296908 - 44296860
Alignment:
Q  114 gtggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    |||||||||| |||| |||| |||||||||| |||||||||||| ||||    
T  44296908 gtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 44296860  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 23253485 - 23253534
Alignment:
Q  113 cgtggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    |||||| ||||||||| |||| |||||||||| |||||||||||||||||    
T  23253485 cgtggttcaccggtgagggacttaattggaccctcaccctagaatccacc 23253534  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 39466933 - 39466885
Alignment:
Q  114 gtggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    ||||||||||||||| |||| |||||||||| |||||||||||| ||||    
T  39466933 gtggtccaccggtgagggacttaattggaccctcaccctagaattcacc 39466885  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 24565620 - 24565572
Alignment:
Q  115 tggtccaccggtgaaggacctaattggaccttcaccctagaatccaccg 163  Q
    |||||||||||||| |||  |||||| ||| ||||||||||||||||||    
T  24565620 tggtccaccggtgagggatttaattgaaccctcaccctagaatccaccg 24565572  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 24606656 - 24606608
Alignment:
Q  115 tggtccaccggtgaaggacctaattggaccttcaccctagaatccaccg 163  Q
    |||||||||||||| |||  |||||| ||| ||||||||||||||||||    
T  24606656 tggtccaccggtgagggatttaattgaaccctcaccctagaatccaccg 24606608  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 39937906 - 39937954
Alignment:
Q  114 gtggtccaccggtgaaggacctaattggaccttcaccctagaatccacc 162  Q
    ||||||||||||||| |||| ||| || ||| |||||||||||||||||    
T  39937906 gtggtccaccggtgagggacttaactgaaccctcaccctagaatccacc 39937954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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