View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13909_low_1 (Length: 428)
Name: NF13909_low_1
Description: NF13909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13909_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 47808707 - 47808299
Alignment:
| Q |
1 |
cttttatcttttttataggatgtgtcacgtatctcgaaatggtcatatgacaagatcatctataatcgt--cgtttctgtatgaactcacgatgcatgtc |
98 |
Q |
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| T |
47808707 |
cttttatcttttttataggatgtgtcacgtatctcgaaatggtcatatgacaagattatctataatcgtgtcgtttctgtatgaactcacgaggcatgtc |
47808608 |
T |
|
| Q |
99 |
ttctgagtagagggtgtattctttgcaccaagtgttgaatctttcatgcaaaaggcacaaattcagataatgtgctagcaaatagaaaatgcataagtaa |
198 |
Q |
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| T |
47808607 |
ttctgagtagagggtgtattctttgcaccaagtgttgaatctttcatgcaaaaggcacaaattcagataatgtgctagcaaatagaaaatgcataagtaa |
47808508 |
T |
|
| Q |
199 |
cgtgagaattgggtgatcaaacttgctgggaaggccagctatttatagtgttgctatctttactctagagtttgtttcaaatatttttatgtttgttaca |
298 |
Q |
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| T |
47808507 |
cgtgagaattgggtgatcaaacttgctgggaaggccagctatttatagtgttgctatctttactctagagtttgtttcaaatatttttatgtttgttaca |
47808408 |
T |
|
| Q |
299 |
gaaactgaatatgagcaactactatctaacttgaatacattccttgacactatgaacaatttagtagatatctaactgttcctttggtgctaaagacgat |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
47808407 |
gaaactgaatatgagcaactactatctaacttgaatacattccttgacgctatgaacaatttagtagatatctgattgttcctttggtgctaaagacgat |
47808308 |
T |
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| Q |
399 |
ggagcacgt |
407 |
Q |
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| T |
47808307 |
ggagcacgt |
47808299 |
T |
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