View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13909_low_2 (Length: 324)
Name: NF13909_low_2
Description: NF13909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13909_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 6 - 308
Target Start/End: Original strand, 38083477 - 38083779
Alignment:
| Q |
6 |
agaagcataggacaccaaataaacaataaacctaaaatttaaaatccagaatttgaggagcaaagttaggttaatcccatcctatccttgtatgatcggt |
105 |
Q |
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| T |
38083477 |
agaaacataagacaccaaataaacaataaacctaaaatttaaaatccagaatttgaggagcaaagttaggttaatcccatcctatccttgtatgatcggt |
38083576 |
T |
|
| Q |
106 |
tattagttgttcatttattgattatttattttgagcagtgtgtacaatattatgattaatgaaaaagttgcagnnnnnnnnnnnnnnnnnctgtcttgtt |
205 |
Q |
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| T |
38083577 |
tattagttgttcatttattgattatttattttgagcagtgtgtacaatattatgattaataaaaaagttgcagttttaattttattttttctgtcttgtt |
38083676 |
T |
|
| Q |
206 |
ttgtttgtgtggggtccgtgggtgcctcgtagtttggtttgtgattttgataaggtaacctgagtgaccaattacgaagttcggtcacacaaactcacac |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38083677 |
ttgtttgtgtggggtccgtgggtgcctcgtagtttggtttgtgattttgataaggtaacctgagtgaccaattacgaagttcggtcacacaaactcacac |
38083776 |
T |
|
| Q |
306 |
ttt |
308 |
Q |
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||| |
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| T |
38083777 |
ttt |
38083779 |
T |
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