View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13909_low_4 (Length: 240)
Name: NF13909_low_4
Description: NF13909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13909_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 13262198 - 13261975
Alignment:
| Q |
1 |
ttgtgagtaagaatatggtgaatcaaacgacggcgaaagcatcgttgattcagatgttagtgattgtgtttaggagaatggaagctgattcttccacggt |
100 |
Q |
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| T |
13262198 |
ttgtgagtaagaatatggtgaatcaaacgaccgcgaaagcatcgttgattcagatgttagtgattgtgtttaggagaatggaagctgattcttccacggt |
13262099 |
T |
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| Q |
101 |
tccaattcagccgattgtggtggctgagttgatgaagccagcggaaaaatctgaggtggatagtacaatgacacagttcgtgcaagggtttattactaag |
200 |
Q |
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| T |
13262098 |
tccaattcagccgattgtggtggctgagttgatgaagccagcggaaaaatctgaggtggatagtacaatgacacagtttgtgcaagggtttattactaag |
13261999 |
T |
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| Q |
201 |
gtaatgcatgatattgatggagtt |
224 |
Q |
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| T |
13261998 |
gtaatgcacgatattgatggagtt |
13261975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 6 - 224
Target Start/End: Original strand, 28133935 - 28134153
Alignment:
| Q |
6 |
agtaagaatatggtgaatcaaacgacggcgaaagcatcgttgattcagatgttagtgattgtgtttaggagaatggaagctgattcttccacggttccaa |
105 |
Q |
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| T |
28133935 |
agtaagaatgtggtgaatcaaactactgcgaaagcgtcgttgattcagatgttagtgattgtttttaggagaatggaggcggattcttcgactgttccga |
28134034 |
T |
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| Q |
106 |
ttcagccgattgtggtggctgagttgatgaagccagcggaaaaatctgaggtggatagtacaatgacacagttcgtgcaagggtttattactaaggtaat |
205 |
Q |
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| T |
28134035 |
ttcagccgattgtggtggcggaattgatggatccagtggagaaatctgatgttgatagctctatgacagtgtttgtgcaaggttttataacaaaaattat |
28134134 |
T |
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| Q |
206 |
gcatgatattgatggagtt |
224 |
Q |
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| T |
28134135 |
gcaagatatagatggagtt |
28134153 |
T |
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