View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390R-Insertion-1 (Length: 1090)

Name: NF1390R-Insertion-1
Description: NF1390R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390R-Insertion-1
NF1390R-Insertion-1
[»] chr2 (6 HSPs)
chr2 (9-448)||(41769224-41769661)
chr2 (528-637)||(41768808-41768917)
chr2 (9-109)||(9580914-9581014)
chr2 (528-610)||(34238667-34238749)
chr2 (541-610)||(41770454-41770523)
chr2 (529-611)||(30270144-30270226)
[»] chr4 (8 HSPs)
chr4 (644-964)||(39832164-39832477)
chr4 (245-448)||(39831673-39831876)
chr4 (528-637)||(39831955-39832064)
chr4 (531-610)||(46144752-46144831)
chr4 (528-610)||(20422975-20423057)
chr4 (529-609)||(23638186-23638266)
chr4 (529-609)||(36001036-36001116)
chr4 (529-609)||(36001825-36001905)
[»] chr3 (3 HSPs)
chr3 (150-362)||(17356-17570)
chr3 (528-611)||(17804-17887)
chr3 (379-444)||(17650-17715)
[»] chr5 (3 HSPs)
chr5 (528-637)||(10470070-10470179)
chr5 (528-617)||(43511062-43511151)
chr5 (529-609)||(4908365-4908445)
[»] chr7 (1 HSPs)
chr7 (528-637)||(45432892-45433001)
[»] chr8 (3 HSPs)
chr8 (528-625)||(42294221-42294318)
chr8 (530-617)||(5780635-5780723)
chr8 (529-634)||(36697695-36697800)
[»] scaffold0086 (1 HSPs)
scaffold0086 (573-637)||(8414-8478)
[»] chr1 (2 HSPs)
chr1 (529-611)||(44769510-44769592)
chr1 (529-609)||(17172776-17172856)


Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 9 - 448
Target Start/End: Original strand, 41769224 - 41769661
Alignment:
Q  9 aacccaccatttacaaccgtcgtcggaaacttcaacactctcgattacctccgtttcaccaccatcgccggcatttccgtcaccgtctgctatctttccg 108  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||| |    
T  41769224 aacccaccattcacaaccgtcgttggaaacttcaacactctcgattacctccgtttcaccaccatcgctggcatttccgtcaccgtcagctatccttctg 41769323  T
Q  109 ggattaagcctggaattagaggactcttaacacttccatttatatctatgtcttgttatccctaatttggttggtcatgtttctcgagattaattaaaag 208  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41769324 ggattaagcctggaattagaggactcttaacactcccatttatatctatgtcttgttatccctaatttggttggtcatgtttctcgagattaattaaaag 41769423  T
Q  209 gccatataacaaagtcaaaaatctatggnnnnnnnnatcatagaaactaaaggtttttctaaattaataatttgtatcaatatgaaattagtagaaacaa 308  Q
    | ||||||||||||||||||||||||||        |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  41769424 gtcatataacaaagtcaaaaatctatgg--ttttttatcatagaaactaaagatttttctaaattaataatttgtatcgatatgaaattagtagaaacaa 41769521  T
Q  309 agttcatcacagcttgatagctcagaagaaacaagattcctcacactaccatggtccatggatgcatccttgtacaaagttgagaagttaattattactg 408  Q
    |||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41769522 agttcatcgcggcttgatagctcagaagaaacaagattcctcacattaccatggtccatggatgcatccttgtacaaagttgagaagttaattattactg 41769621  T
Q  409 tgtatgagtggtacaataaattgggtctgagtgatgaagc 448  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41769622 tgtatgagtggtacaataaattgggtctgagtgatgaagc 41769661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 528 - 637
Target Start/End: Complemental strand, 41768917 - 41768808
Alignment:
Q  528 taatcatgtgcaattaattttatatgaagcttttaatctgatccgtacaatttgatctaatggttattaatgagttctctcatcctctcatttaaaaagt 627  Q
    |||| ||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41768917 taataatgtgcaattaattttatacgaagcttttaatccgatccatacaatttgatctaatggttattaacgagttctctcatcctctcatttaaaaagt 41768818  T
Q  628 gctctcactt 637  Q
    ||||||||||    
T  41768817 gctctcactt 41768808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 9581014 - 9580914
Alignment:
Q  9 aacccaccatttacaaccgtcgtcggaaacttcaacactctcgattacctccgtttcaccaccatcgccggcatttccgtcaccgtctgctatctttccg 108  Q
    ||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  9581014 aacccaccattcaccaccgtcgtcggaaacttcaacactctcgactacctccgtttcaccaccatcgccggcatttccgtcaccgtcggttatctttccg 9580915  T
Q  109 g 109  Q
    |    
T  9580914 g 9580914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 528 - 610
Target Start/End: Original strand, 34238667 - 34238749
Alignment:
Q  528 taatcatgtgcaattaattttatatgaagcttttaatctgatccgtacaatttgatctaatggttattaatgagttctctcat 610  Q
    ||||||||||| || |||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| |||||||    
T  34238667 taatcatgtgctatcaattttatatgaagcttttaatttgatccgttcaatttgatctaatggctattaatgagtcctctcat 34238749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 541 - 610
Target Start/End: Original strand, 41770454 - 41770523
Alignment:
Q  541 ttaattttatatgaagcttttaatctgatccgtacaatttgatctaatggttattaatgagttctctcat 610  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  41770454 ttaattttatatgaagcttttaatctgatccatacaatttgatctgatggttattaatgagtcctctcat 41770523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 529 - 611
Target Start/End: Original strand, 30270144 - 30270226
Alignment:
Q  529 aatcatgtgcaattaattttatatgaagcttttaatctgatccgtacaatttgatctaatggttattaatgagttctctcatc 611  Q
    ||||||||| ||||||||  ||||| | |||||||| ||| ||  ||||||||||||||||| ||||||||||| ||||||||    
T  30270144 aatcatgtgtaattaattaaatatggaacttttaatttgagccacacaatttgatctaatggctattaatgagtcctctcatc 30270226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 200; Significance: 1e-108; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 644 - 964
Target Start/End: Original strand, 39832164 - 39832477
Alignment:
Q  644 ttctccacttagcaatttctgcttcttagtaaaggtgtttgtagtgtggtttggatcgattttgaggtaaaaatctatttgataaaagataaaactattg 743  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  39832164 ttctccacttagcaatttctgcttcttagtaaaggtgtttgtagtatggtttggatcgattttgaggtaaaaatctatttgataaaagataaaattactg 39832263  T
Q  744 tgcattcggttcggttatagatgaattatttnnnnnnnttccatatggttcaatttaatttgaataggttttgggtatccaaattacaagttgtaaannn 843  Q
    ||||||||||||||||||||||| |||| ||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  39832264 tgcattcggttcggttatagatg-attaatttaaaaaattccatatggttcaatttaatttgaataggttttgggtatccaaattacaagttgtaaa-tt 39832361  T
Q  844 nnnnnattaatattataaaaaaccacagtaaaataataagtttgatggaagatataataaggttttggaaggtgcataatttaaggatttggtcaaaaca 943  Q
         |||||||||||||| |  |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  39832362 tttttattaatattataaaga--cacattaaaataataagtttgatggaagatataat-aggttttggaaggtgcataatttaaggattt-gtcaaaaca 39832457  T
Q  944 aacacttagacaatggctcag 964  Q
    |||||| |||| |||||||||    
T  39832458 aacactcagac-atggctcag 39832477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 245 - 448
Target Start/End: Original strand, 39831673 - 39831876
Alignment:
Q  245 atcatagaaactaaaggtttttctaaattaataatttgtatcaatatgaaattagtagaaacaaagttcatcacagcttgatagctcagaagaaacaaga 344  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  39831673 atcatagaaactaaaggttttactaaattaataatttgtatcgatatgaaattagtagaaacaaagtttatcacggcttgatagctcagaagaaacaaga 39831772  T
Q  345 ttcctcacactaccatggtccatggatgcatccttgtacaaagttgagaagttaattattactgtgtatgagtggtacaataaattgggtctgagtgatg 444  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  39831773 ttcctcacattaccatggtccatggatgcatccttgtacaaagttgagaagttaattattactgggtatgagaggtacaataaattgggtctgagtgatg 39831872  T
Q  445 aagc 448  Q
    ||||    
T  39831873 aagc 39831876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 528 - 637
Target Start/End: Original strand, 39831955 - 39832064
Alignment:
Q  528 taatcatgtgcaattaattttatatgaagcttttaatctgatccgtacaatttgatctaatggttattaatgagttctctcatcctctcatttaaaaagt 627  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39831955 taatcatgtgcaattaattttatatgaagtttttaatctgatccatacaatttgatctaatggttattaatgagtcctctcatcctctcatttaaaaagt 39832054  T
Q  628 gctctcactt 637  Q
    ||||||||||    
T  39832055 gctctcactt 39832064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 531 - 610
Target Start/End: Complemental strand, 46144831 - 46144752
Alignment:
Q  531 tcatgtgcaattaattttatatgaagcttttaatctgatccgtacaatttgatctaatggttattaatgagttctctcat 610  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||    
T  46144831 tcatgagcaattaattttatatgaagcttttaatctgatccatacaatttgatctaatagttattaatgagtcctctcat 46144752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 528 - 610
Target Start/End: Complemental strand, 20423057 - 20422975
Alignment:
Q  528 taatcatgtgcaattaattttatatgaagcttttaatctgatccgtacaatttgatctaatggttattaatgagttctctcat 610  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||||    
T  20423057 taatcatgtgcaatcaattttatatgaagcttttaatctgatccgttcaatttgatttaatggctattaatgagtcctctcat 20422975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 529 - 609
Target Start/End: Original strand, 23638186 - 23638266
Alignment:
Q  529 aatcatgtgcaattaattttatatgaagcttttaatctgatccgtacaatttgatctaatggttattaatgagttctctca 609  Q
    |||| |||| ||||||||||| ||| | |||||||||||| ||  ||||||| ||||||||  ||||||||||| ||||||    
T  23638186 aatcttgtgtaattaattttagatggaacttttaatctgagccacacaatttaatctaatgtctattaatgagtcctctca 23638266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 529 - 609
Target Start/End: Complemental strand, 36001116 - 36001036
Alignment:
Q  529 aatcatgtgcaattaattttatatgaagcttttaatctgatccgtacaatttgatctaatggttattaatgagttctctca 609  Q
    ||||||||| ||||||||| | ||| |||||||||||||| ||  ||||||| || |||||| |||||| |||| ||||||    
T  36001116 aatcatgtgtaattaatttaaaatggagcttttaatctgagccacacaatttaatttaatggctattaaagagtcctctca 36001036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 529 - 609
Target Start/End: Original strand, 36001825 - 36001905
Alignment:
Q  529 aatcatgtgcaattaattttatatgaagcttttaatctgatccgtacaatttgatctaatggttattaatgagttctctca 609  Q
    |||| |||| ||||||||||| ||| | |||||||||||| ||  | ||||| ||||||||| ||||||||||| ||||||    
T  36001825 aatcttgtgtaattaattttagatggaacttttaatctgagccacataatttaatctaatggctattaatgagtcctctca 36001905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 6e-40; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 150 - 362
Target Start/End: Original strand, 17356 - 17570
Alignment:
Q  150 atatctatgtcttgttatccctaatttggttggt--catgtttctcgagattaattaaaaggccatataacaaagtcaaaaatctatggnnnnnnnnatc 247  Q
    ||||||||||||||||||||||||||||||||||  |||||||||| | |||||||||||   ||||||||||| || ||| |||| ||        |||    
T  17356 atatctatgtcttgttatccctaatttggttggtgtcatgtttctcaaaattaattaaaaattcatataacaaattccaaattcta-gggtttttttatc 17454  T
Q  248 atagaaactaaaggtttttctaaattaataatttgtatcaatatgaaattagtagaaacaaagttcatcacagcttgatagctcagaagaaacaaga-tt 346  Q
    || ||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||| ||| | || |||  ||||||||| |||||||||| ||    
T  17455 atggaaactaaaggtttttctaaattaataatttatatcgatatgaaattagtggaaacaaaattcctaacggctccatagctcagtagaaacaagattt 17554  T
Q  347 cctcacactaccatgg 362  Q
    ||||||| ||||||||    
T  17555 cctcacattaccatgg 17570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 528 - 611
Target Start/End: Original strand, 17804 - 17887
Alignment:
Q  528 taatcatgtgcaattaattttatatgaagcttttaatctgatccgtacaatttgatctaatggttattaatgagttctctcatc 611  Q
    |||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||| || || |||||||| ||||||||    
T  17804 taatcatgtgtaattaattttatatcgagcttttaatctgatccgtacaatttgatctaaaggctactaatgagtcctctcatc 17887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 379 - 444
Target Start/End: Original strand, 17650 - 17715
Alignment:
Q  379 tgtacaaagttgagaagttaattattactgtgtatgagtggtacaataaattgggtctgagtgatg 444  Q
    |||| |||||||||||||||||||||||||||||||||||||||||  |||||||| |||| ||||    
T  17650 tgtataaagttgagaagttaattattactgtgtatgagtggtacaactaattgggtttgagcgatg 17715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 4e-38; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 528 - 637
Target Start/End: Complemental strand, 10470179 - 10470070
Alignment:
Q  528 taatcatgtgcaattaattttatatgaagcttttaatctgatccgtacaatttgatctaatggttattaatgagttctctcatcctctcatttaaaaagt 627  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||| |||||||||||||||||||||| |    
T  10470179 taatcatgtgcaatcaattttatatgaagcttttaatctgatccgttcaatttaatctaatggctattaatgagtcctctcatcctctcatttaaaaaat 10470080  T
Q  628 gctctcactt 637  Q
     |||||||||    
T  10470079 cctctcactt 10470070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 528 - 617
Target Start/End: Complemental strand, 43511151 - 43511062
Alignment:
Q  528 taatcatgtgcaattaattttatatgaagcttttaatctgatccgtacaatttgatctaatggttattaatgagttctctcatcctctca 617  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| ||||||||||||||    
T  43511151 taatcatgtgcaatcaattttatatgaagcttttaatcagatccgttcaatttgatctaatggctattaatgagtcctctcatcctctca 43511062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 529 - 609
Target Start/End: Complemental strand, 4908445 - 4908365
Alignment:
Q  529 aatcatgtgcaattaattttatatgaagcttttaatctgatccgtacaatttgatctaatggttattaatgagttctctca 609  Q
    ||||||||| ||||||||||| ||| |||||||||||||| ||  ||||||| |||||| || |||||| |||| ||||||    
T  4908445 aatcatgtgtaattaattttagatggagcttttaatctgagccacacaatttaatctaaaggctattaacgagtcctctca 4908365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 9e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 528 - 637
Target Start/End: Original strand, 45432892 - 45433001
Alignment:
Q  528 taatcatgtgcaattaattttatatgaagcttttaatctgatccgtacaatttgatctaatggttattaatgagttctctcatcctctcatttaaaaagt 627  Q
    |||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||| | ||||||||||| |||||||||||||||||||||| |    
T  45432892 taatcatgtgcaatcaattttatatgaagcttttaatctgatccattcaatttgatctaatagctattaatgagtcctctcatcctctcatttaaaaaat 45432991  T
Q  628 gctctcactt 637  Q
     |||||||||    
T  45432992 cctctcactt 45433001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 3e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 528 - 625
Target Start/End: Original strand, 42294221 - 42294318
Alignment:
Q  528 taatcatgtgcaattaattttatatgaagcttttaatctgatccgtacaatttgatctaatggttattaatgagttctctcatcctctcatttaaaaa 625  Q
    |||||||||||||| |||||||||| |||||||||||||||| ||  |||||||||||||||| ||||||||| | ||||||||||||| ||||||||    
T  42294221 taatcatgtgcaatcaattttatataaagcttttaatctgattcgctcaatttgatctaatggctattaatgaatcctctcatcctctcctttaaaaa 42294318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 530 - 617
Target Start/End: Original strand, 5780635 - 5780723
Alignment:
Q  530 atcatgtgcaattaattttatatgaagcttttaatctgatccgtacaatttgatct-aatggttattaatgagttctctcatcctctca 617  Q
    |||||||| ||||||||||||||| ||| || ||||||| ||||  ||||||| || ||||| ||| ||||||| ||||||||||||||    
T  5780635 atcatgtgtaattaattttatatggagcattaaatctgaaccgtttaatttgaactaaatggctataaatgagtcctctcatcctctca 5780723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 529 - 634
Target Start/End: Complemental strand, 36697800 - 36697695
Alignment:
Q  529 aatcatgtgcaattaattttatatgaagcttttaatctgatccgtacaatttgatctaatggttattaatgagttctctcatcctctcatttaaaaagtg 628  Q
    |||| ||||||||||||||| | || | ||||||   ||  |||||||||||||||||| || | ||| | | | |||||| |||||||||||||||||     
T  36697800 aatcctgtgcaattaattttgtgtggaacttttagcatgcaccgtacaatttgatctaagggctgttatttactcctctcaccctctcatttaaaaagtc 36697701  T
Q  629 ctctca 634  Q
    ||||||    
T  36697700 ctctca 36697695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 573 - 637
Target Start/End: Original strand, 8414 - 8478
Alignment:
Q  573 tacaatttgatctaatggttattaatgagttctctcatcctctcatttaaaaagtgctctcactt 637  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||  ||||||||    
T  8414 tacaatttgatctaatggttattaatgagtcctctcatcctctcatttaaagagtaatctcactt 8478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 529 - 611
Target Start/End: Original strand, 44769510 - 44769592
Alignment:
Q  529 aatcatgtgcaattaattttatatgaagcttttaatctgatccgtacaatttgatctaatggttattaatgagttctctcatc 611  Q
    ||||||||| ||||||||| ||||| |||||| ||||||| ||| ||||||||||||||||| |||||||| || ||||||||    
T  44769510 aatcatgtgtaattaatttaatatggagctttaaatctgacccgcacaatttgatctaatggctattaatgggtcctctcatc 44769592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 529 - 609
Target Start/End: Complemental strand, 17172856 - 17172776
Alignment:
Q  529 aatcatgtgcaattaattttatatgaagcttttaatctgatccgtacaatttgatctaatggttattaatgagttctctca 609  Q
    ||||||||| ||||||||||| ||| |||||||||||||| ||  ||||||| |||||| || ||||||||||| ||||||    
T  17172856 aatcatgtgtaattaattttagatggagcttttaatctgagccacacaatttaatctaaaggctattaatgagtcctctca 17172776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University