View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390R-Insertion-10 (Length: 385)
Name: NF1390R-Insertion-10
Description: NF1390R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390R-Insertion-10 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 9 - 385
Target Start/End: Complemental strand, 46167470 - 46167094
Alignment:
| Q |
9 |
ctatatttcaccaatttattttggtctgctagtttgaaactgtggctacctaacagaactgcagaaaatatcttcatctgtctgtatgcaaactccttgc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46167470 |
ctatatttcaccaatttattttggtctgctagtttgaaactgtggctacctaacagaactgcagaaaatatcttcatctgtctgtatgcaaactccttgc |
46167371 |
T |
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| Q |
109 |
caaggcaaattcttggacccgcctgtgttaggaaatcacattgatagtaaagttacatagagatatattgtgagactgtttgaaagagcttatgaaaata |
208 |
Q |
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| T |
46167370 |
caaggcaaattcttggacccgcctgtgttaggaaatcacattgatagtaaagttacatagagatatattgtgagactgtttgaaagagcttatgaaaata |
46167271 |
T |
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| Q |
209 |
tgatatagcttatatgaatacaatttgattttatctagtggtagaaattgcttatacagaagcacgtatatgataagcgattatgcgacgacaagcacct |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
46167270 |
tgatatagcttatatgaatacaatttgattttatctagtggtagaaattgcttatacagaagcacgtatatgataagcgattatgcgacgacaagcgcct |
46167171 |
T |
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| Q |
309 |
aattaagttgttcatacctggaaggctgtgaacttaaaagggctctctctttgaaaatttccattttcatcaagcca |
385 |
Q |
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| T |
46167170 |
aattaagttgttcatacctggaaggctgtgaacttaaaagggctctctctttgaaaatttccattttcatcaagcca |
46167094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 9 - 169
Target Start/End: Complemental strand, 46160954 - 46160794
Alignment:
| Q |
9 |
ctatatttcaccaatttattttggtctgctagtttgaaactgtggctacctaacagaactgcagaaaatatcttcatctgtctgtatgcaaactccttgc |
108 |
Q |
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| T |
46160954 |
ctatatttcaccaatctattttggtctgctagtttgaagttgtgactacctaacagaactgcagaaaatatcttcatctgtctgtatacaaactccttgc |
46160855 |
T |
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| Q |
109 |
caaggcaaattcttggacccgcctgtgttaggaaatcacattgatagtaaagttacataga |
169 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
46160854 |
caagacaaattcttggacccgcctgtgttaggatgtcacattgacagtaaagttacataga |
46160794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 46182718 - 46182598
Alignment:
| Q |
9 |
ctatatttcaccaatttattttggtctgctagtttgaaactgtggctacctaacagaactgcagaaaatatcttcatctgtctgtatgcaaactccttgc |
108 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||| || |||||||||||||||| ||||| |
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| T |
46182718 |
ctatatttcaccaatttattttggtctgctagtttatagttgtggctacctaatagaactgcagaaaatatctttatatgtctgtatgcaaacttcttgc |
46182619 |
T |
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| Q |
109 |
caaggcaaattcttggacccg |
129 |
Q |
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| T |
46182618 |
caaggcaaactcttggacccg |
46182598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 274 - 385
Target Start/End: Complemental strand, 46160340 - 46160232
Alignment:
| Q |
274 |
gtatatgataagcgattatgcgacgacaagcacctaattaagttgttcatacctggaaggctgtgaacttaaaagggctctctctttgaaaatttccatt |
373 |
Q |
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||||||||||||||||||||| || |||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
46160340 |
gtatatgataagcgattatgctac---aagcgcctaattaagttgttcatacctgaaaggctgtgaacttaaaagggctttctctctgaaaatttccatt |
46160244 |
T |
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| Q |
374 |
ttcatcaagcca |
385 |
Q |
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| T |
46160243 |
ttcatcaagcca |
46160232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 26516256 - 26516212
Alignment:
| Q |
250 |
tagaaattgcttatacagaagcacgtatatgataagcgattatgc |
294 |
Q |
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| T |
26516256 |
tagaaatagcttatacataagcacttatatgataagcgcttatgc |
26516212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 28283561 - 28283593
Alignment:
| Q |
176 |
ttgtgagactgtttgaaagagcttatgaaaata |
208 |
Q |
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| T |
28283561 |
ttgtgagactgtttgaaagaacttatgaaaata |
28283593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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