View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1390R-Insertion-11 (Length: 360)
Name: NF1390R-Insertion-11
Description: NF1390R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390R-Insertion-11 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 110 - 360
Target Start/End: Original strand, 11825332 - 11825582
Alignment:
| Q |
110 |
tattagttagtacaggattctaatattattcatttggttggttgatttattggatcatattgctacaacctagattttgtgtcgaaaaaatcaatacgtt |
209 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11825332 |
tattagttagtacatgattctaatattattcatttggttggttgatttattggatcatattgctacaacctagattttgtgtcgaaaaaatcaacacgtt |
11825431 |
T |
|
| Q |
210 |
tgtaaaactcaagcctacccaattcatatatttagttctggaaccattccgttgacttagactcgcaatttagcttattccgcaaaatacgtgccaaaac |
309 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
11825432 |
tgtaaaactcaagcctaccgaattcatatatttagttctggaaccattccgttgacttagactcgcaatttaacttattccgcaaaatacgcgccaaaac |
11825531 |
T |
|
| Q |
310 |
ccgtaagcatttttccagcagaaaacccaacttcaaaaccactttctgagt |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
11825532 |
ccgtaagcatttttccagcagaaaacccaacttcaaaagcactttccgagt |
11825582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 11825231 - 11825286
Alignment:
| Q |
12 |
tcttcatataacaaatctcaaaccactcgatctttggcagttaaaaaccttactaa |
67 |
Q |
| |
|
|||||||||| |||||||||| |||||| ||||||||||||||| ||||||||||| |
|
|
| T |
11825231 |
tcttcatatatcaaatctcaagccactcaatctttggcagttaagaaccttactaa |
11825286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 333
Target Start/End: Complemental strand, 14175701 - 14175611
Alignment:
| Q |
243 |
agttctggaaccattccgttgacttagactcgcaatttagcttattccgcaaaatacgtgccaaaacccgtaagcatttttccagcagaaa |
333 |
Q |
| |
|
||||||||| ||||||| | ||| | |||| || | |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14175701 |
agttctggagccattccatcaactaaaactcacagtatagcttattccgcaaaatctacatcaaaacccgtaagcatttttccagcagaaa |
14175611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University