View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390R-Insertion-12 (Length: 332)
Name: NF1390R-Insertion-12
Description: NF1390R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390R-Insertion-12 |
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| [»] chr3 (2 HSPs) |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 158 - 332
Target Start/End: Original strand, 1529718 - 1529903
Alignment:
| Q |
158 |
gcttcgtctgagacaacatgtgttgcgtcgacaatcgtttctccgtcgtccttgctctttgcttcaaaggtgagtctattctttcattac---------- |
247 |
Q |
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| T |
1529718 |
gcttcgtctgagacaacatgtgttgcgccgacaatcgtttctccgtcgtccttgctctttgcttcaaaggtgagtctattctttcattactttgctgtta |
1529817 |
T |
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| Q |
248 |
-aacatcaagaatccctaaattaattttaaaattgcaaccttctaattatttggttatatgaaatcttctaatattgatacttatg |
332 |
Q |
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| T |
1529818 |
caacatcaagaatccctaaattaattttaaaattgcaaccttctaattatttggttatatgaaatcttctaatattgatacttatg |
1529903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 1529599 - 1529663
Alignment:
| Q |
38 |
acactgtttcgccatctaaaaatgtacagataaaacctcgccgggacggccatgttcggcataac |
102 |
Q |
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| T |
1529599 |
acactgtttcgccatctaaaaatgtacagataaaacctcgccgggacggccatgttcggcataac |
1529663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 5e-59; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 158 - 332
Target Start/End: Original strand, 26841487 - 26841678
Alignment:
| Q |
158 |
gcttcgtctgagacaacatgtgttgcgtcgacaatcgtttctccgtcgtccttgctctttgcttcaaaggtgagtctattctttcattac---------- |
247 |
Q |
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| T |
26841487 |
gcttcgtcggagacaacatgtgttgcgccgacaatcgtttctccgtcgtccttgctctttgcttcaaaggcgagtctattctttcgttactttgttgtgc |
26841586 |
T |
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| Q |
248 |
-------aacatcaagaatccctaaattaattttaaaattgcaaccttctaattatttggttatatgaaatcttctaatattgatacttatg |
332 |
Q |
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| T |
26841587 |
ctgttacaacatcaagaatccctaaattaattttaaaattgcaaccttctaattattgggttatatgaaatcttctaatattgatacttatg |
26841678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 209 - 332
Target Start/End: Complemental strand, 22476949 - 22476815
Alignment:
| Q |
209 |
ttgctctttgcttcaaaggtgagtctattctttcattac-----------aacatcaagaatccctaaattaattttaaaattgcaaccttctaattatt |
297 |
Q |
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| T |
22476949 |
ttgctctttgcttcaaaggtgagtctattctttcattactttgttgttacaacatgagaaatccctaaattaattttaaaattgcagccttctaattatt |
22476850 |
T |
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| Q |
298 |
tggttatatgaaatcttctaatattgatacttatg |
332 |
Q |
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| T |
22476849 |
tggttatatgaaatcttctaatattgatacttatg |
22476815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 26841339 - 26841426
Alignment:
| Q |
10 |
cttcaaccacggtcatcgcctaagccaaacactgtttcgccatctaaaaatgtacagataaaacctcgccgggacggccatgttcggc |
97 |
Q |
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| T |
26841339 |
cttcaaccactgtcatcgcctaagccaaacactgtttcgccatctaaaaatgtacagataaaacctcgccggaacagccatgttcggc |
26841426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 22477065 - 22477025
Alignment:
| Q |
10 |
cttcaaccacggtcatcgcctaagccaaacactgtttcgcc |
50 |
Q |
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| T |
22477065 |
cttcaaccacagtcatcgcctaagccaaacactgtttcgcc |
22477025 |
T |
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