View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390R-Insertion-13 (Length: 330)
Name: NF1390R-Insertion-13
Description: NF1390R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390R-Insertion-13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 13 - 330
Target Start/End: Original strand, 33657182 - 33657508
Alignment:
| Q |
13 |
cttgtctagctcttgccactatatatata--aaccaagctcaacaaaaacatatcattcattcattgacttgaaccatatagcacattccatatccatcc |
110 |
Q |
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| T |
33657182 |
cttgtctagctcttgccactatatatatataaaccaagctcaacaaaaacatatcattcattcattgacttgaaccatttagcacattccatatccatcc |
33657281 |
T |
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| Q |
111 |
atcatatttcatcattatttctcgttctac-------gtgctatggatattattgcaattttattttacaccttcctctttctcttaattaccctcctct |
203 |
Q |
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| T |
33657282 |
atcatatttcatcattatttctcgttctacctcgagagtactatggatattattgcaattttattttacaccttcctctttctcttaattaccctcctct |
33657381 |
T |
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| Q |
204 |
tgtatccattcctaatgaaacacaataaaaacaaagccacgtccaagcctaaggttcccccaggttcaatgggttggccatatataggagaaactcttca |
303 |
Q |
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| T |
33657382 |
tgtatccattcataatgaaacacaataaacacagagccacgtccaagcctaaggttcccccaggttcaatgggttggccatatataggagaaactcttca |
33657481 |
T |
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| Q |
304 |
actttactctcaacaccctaacacctt |
330 |
Q |
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| T |
33657482 |
actttactctcaacatcctaacacctt |
33657508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 33698161 - 33698229
Alignment:
| Q |
258 |
ttcccccaggttcaatgggttggccatatataggagaaactcttcaactttactctcaacaccctaaca |
326 |
Q |
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| T |
33698161 |
ttcccccaggttcattgggttggccttatataggagaaacttttcaactctactctcaacaccctaaca |
33698229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 10422678 - 10422736
Alignment:
| Q |
266 |
ggttcaatgggttggccatatataggagaaactcttcaactttactctcaacaccctaa |
324 |
Q |
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| T |
10422678 |
ggttcaatgggttggccttacataggagaaacttttcaactttattctcaagaccctaa |
10422736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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