View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390R-Insertion-14 (Length: 325)
Name: NF1390R-Insertion-14
Description: NF1390R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390R-Insertion-14 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 51 - 323
Target Start/End: Complemental strand, 7628837 - 7628565
Alignment:
| Q |
51 |
aattcgttgcaactttgtgtaattgacacaacttataacaatctgtcagtagactcataagcctagtcagctcaaaataactattttataactaatgaaa |
150 |
Q |
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| T |
7628837 |
aattcgttgcaactttgtgtaattgacacaacttataacaatctgtcagtagactcataagcctagccagctcaaaataactattttataactaatgaaa |
7628738 |
T |
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| Q |
151 |
aatgataacatgtacggtaatgacaaagttaatatattaaatataaaatttaaggacaaacgttggtatgacccataactagttcagtattttttgtttc |
250 |
Q |
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| T |
7628737 |
aatgataacatgtacggtaatgacaaagttaataaattaaatataaaatttaaggacaaacgttggtacgacccataactagttcaatattttttgtttc |
7628638 |
T |
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| Q |
251 |
aattcgacgaactctataacttttttggattgggcaaaagttcattcactaaacggactgcattaccttaagt |
323 |
Q |
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| T |
7628637 |
aattcaacgaactctataacttttttggattgggcaaaagttcattcactaaacggactgcattaccttaagt |
7628565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 7628919 - 7628862
Alignment:
| Q |
9 |
ataacaaactgcataaaattgtaagcaatacgagttgatttcaattcgttgcaacttt |
66 |
Q |
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| T |
7628919 |
ataacaaactgcataaaattgtaagcaatacgagttgatttcaattcgttgcaacttt |
7628862 |
T |
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