View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390R-Insertion-15 (Length: 272)
Name: NF1390R-Insertion-15
Description: NF1390R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390R-Insertion-15 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 50 - 270
Target Start/End: Original strand, 45236860 - 45237080
Alignment:
| Q |
50 |
tgtgtgtgttggattagcacctatagttgtaaatatgatggaaaatagccttcggtttgagtatgtagagggataatctagtgatgtggnnnnnnnnnnn |
149 |
Q |
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| T |
45236860 |
tgtgtgtgttggagtagcacctatagttgtaaatatgatggaaaatagccttcggtttgagtatgtagagagataatctagtgatgtggttttttattta |
45236959 |
T |
|
| Q |
150 |
nnnnnnnaatttggagtttaggtgggaatttatggttatgtagcttattcagccagtaaatttggcctccgtggtttagcagaagcattgcaacaagagg |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45236960 |
tttttttaatttggagtttaggtgggaatttatggttatgtagcttattcagccagtaaatttggcctccgtggtttagcagaagcattgcaacaagagg |
45237059 |
T |
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| Q |
250 |
ttataggagataatattcatg |
270 |
Q |
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||||||||||||||||||||| |
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| T |
45237060 |
ttataggagataatattcatg |
45237080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 168 - 270
Target Start/End: Original strand, 7829972 - 7830074
Alignment:
| Q |
168 |
taggtgggaatttatggttatgtagcttattcagccagtaaatttggcctccgtggtttagcagaagcattgcaacaagaggttataggagataatattc |
267 |
Q |
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||||||||||||||||| |||||||||||||| || |||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
7829972 |
taggtgggaatttatggctatgtagcttattcggctagtaaatttggcctccgtgggttagcagaggcattgcaacaagaggttattggagataatattc |
7830071 |
T |
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| Q |
268 |
atg |
270 |
Q |
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||| |
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| T |
7830072 |
atg |
7830074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 7825355 - 7825396
Alignment:
| Q |
55 |
gtgttggattagcacctatagttgtaaatatgatggaaaata |
96 |
Q |
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|||||||| ||||||||||||||||||||||| || |||||| |
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| T |
7825355 |
gtgttggagtagcacctatagttgtaaatatggtgaaaaata |
7825396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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