View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1390R-Insertion-18 (Length: 222)
Name: NF1390R-Insertion-18
Description: NF1390R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390R-Insertion-18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 220
Target Start/End: Complemental strand, 8756525 - 8756314
Alignment:
| Q |
9 |
gtaagagcctcttccttagcctttggcattgaccaactagacaaggaagaagatgcaggaatcatagagggctactttaattggagctatgctttaacag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8756525 |
gtaagagcctcttccttagcctttggcattgaccaactagacaaggaaaaagatgcaggaatcatagagggctactttaattggagctatgctttaacag |
8756426 |
T |
|
| Q |
109 |
cagctgcagttttaattggaacgaccatcttggcatacattcaagaaaattttggttggattattggatttggtgtccctgttgtcttcatgttcatatc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8756425 |
cagctgcagttttaattggaacgaccatcttggcgtacattcaagaaaattttggttggattattggatttggtgtccctgttgtcttcatgttcatatc |
8756326 |
T |
|
| Q |
209 |
tatggtgtcttt |
220 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8756325 |
tatggtgtcttt |
8756314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 8748974 - 8748761
Alignment:
| Q |
9 |
gtaagagcctcttccttagcctttggcattgaccaactagacaaggaagaagatgcaggaatcatagagggctactttaattggagctatgctttaacag |
108 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
8748974 |
gtaagagcttcttccttaccctttggcattgaccaactagacaaggaaaaagatgcaggaatcatagagggctactttaattggacctatgctttagcaa |
8748875 |
T |
|
| Q |
109 |
cagctgcagttttaattggaacgaccatcttggcatacattcaagaaaattttggttggattattggatttggtgtccctgttgtcttcatgttcatatc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||| | |||||||| |||||||||||||| |
|
|
| T |
8748874 |
cagctgcagttttaattggaacgaccattttggcatatattcaagaaaattttggttggattgttggatttggtttacctgttgtgttcatgttcatatc |
8748775 |
T |
|
| Q |
209 |
tatggtgtctttct |
222 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
8748774 |
tatggtatctttct |
8748761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 8766544 - 8766331
Alignment:
| Q |
9 |
gtaagagcctcttccttagcctttggcattgaccaactagacaaggaagaagatgcaggaatcatagagggctactttaattggagctatgctttaacag |
108 |
Q |
| |
|
|||||||| || || ||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8766544 |
gtaagagcttcctctttagcctttggcattgatcaactaaacaaggaaaaagatgcaggaatcatagagggctactttaattggacctatgctttaacag |
8766445 |
T |
|
| Q |
109 |
cagctgcagttttaattggaacgaccatcttggcatacattcaagaaaattttggttggattattggatttggtgtccctgttgtcttcatgttcatatc |
208 |
Q |
| |
|
|||||||||| ||| ||||| |||| | |||||||| |||||||||| |||||||||||| ||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
8766444 |
cagctgcagtcctaactggaatgaccgttttggcatatattcaagaaatttttggttggatggttggatttggtgtacctgttgtgttcatgttcatatc |
8766345 |
T |
|
| Q |
209 |
tatggtgtctttct |
222 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
8766344 |
tatggtgtctttct |
8766331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University