View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390R-Insertion-20 (Length: 87)
Name: NF1390R-Insertion-20
Description: NF1390R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390R-Insertion-20 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 71; Significance: 9e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 9e-33
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 8491389 - 8491315
Alignment:
| Q |
13 |
gtacacgacactgacccatagagttacaatgaatattgtgattttctcaaattataagcggtatcgacatatcag |
87 |
Q |
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| T |
8491389 |
gtacacgacactgacccatagagttacaatgaatattgtgattttctcaaattataagcggtatcgacatgtcag |
8491315 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 32308182 - 32308123
Alignment:
| Q |
15 |
acacgacactgacccatagagttacaatgaatattgtgattttctcaaattataagcggt |
74 |
Q |
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| T |
32308182 |
acacgacactgacacatacaattacactgaattatgtgattttctcaaattattagcggt |
32308123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 5548738 - 5548679
Alignment:
| Q |
15 |
acacgacactgacccatagagttacaatgaatattgtgattttctcaaattataagcggt |
74 |
Q |
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| T |
5548738 |
acacgacactgacacatataattacactgaattatttgattttctcaaattatcagcggt |
5548679 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 44482292 - 44482234
Alignment:
| Q |
15 |
acacgacactgacccatagagttacaatgaatattgtgattttctcaaattataagcgg |
73 |
Q |
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| T |
44482292 |
acacgacaccgacacatataattacactgaattatgtgattttctcaaattataagcgg |
44482234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 7918208 - 7918260
Alignment:
| Q |
15 |
acacgacactgacccatagagttacaatgaatattgtgattttctcaaattat |
67 |
Q |
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| T |
7918208 |
acacgacactgacacatataattacactgaattatgtgattttctcaaattat |
7918260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 25361948 - 25361896
Alignment:
| Q |
15 |
acacgacactgacccatagagttacaatgaatattgtgattttctcaaattat |
67 |
Q |
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| T |
25361948 |
acacgacactgacacatataattacactgaattatgtgattttctcaaattat |
25361896 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 3966565 - 3966493
Alignment:
| Q |
15 |
acacgacactgacccatagagttacaatgaatattgtgattttctcaaattataagcggtatcgacatatcag |
87 |
Q |
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| T |
3966565 |
acacgacaccgacacatataattacactgaattgtgtgattttctcaaattattagcggtgtcggcatgtcag |
3966493 |
T |
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Target: chr3 (Bit Score: 28; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 1550202 - 1550143
Alignment:
| Q |
15 |
acacgacactgacccatagagttacaatgaatattgtgattttctcaaattataagcggt |
74 |
Q |
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| T |
1550202 |
acacgacactgacacctataattacactgaatagtgtgattttttcaaattattagcggt |
1550143 |
T |
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