View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390R-Insertion-3 (Length: 921)

Name: NF1390R-Insertion-3
Description: NF1390R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390R-Insertion-3
NF1390R-Insertion-3
[»] chr4 (16 HSPs)
chr4 (17-912)||(2813318-2814219)
chr4 (600-759)||(4377154-4377313)
chr4 (608-854)||(2158552-2158801)
chr4 (603-759)||(36247748-36247905)
chr4 (598-759)||(33517945-33518107)
chr4 (623-801)||(1111940-1112118)
chr4 (724-854)||(36247913-36248043)
chr4 (600-676)||(51070314-51070390)
chr4 (657-714)||(50723220-50723277)
chr4 (604-668)||(1758191-1758255)
chr4 (724-824)||(25023196-25023295)
chr4 (724-793)||(33518115-33518184)
chr4 (735-854)||(4377331-4377452)
chr4 (600-655)||(2185129-2185184)
chr4 (632-772)||(52849750-52849884)
chr4 (603-640)||(13834129-13834166)
[»] chr3 (22 HSPs)
chr3 (600-854)||(26285756-26286012)
chr3 (599-854)||(7856413-7856670)
chr3 (607-854)||(24309801-24310047)
chr3 (600-851)||(36475385-36475635)
chr3 (600-832)||(23778173-23778410)
chr3 (603-714)||(25032175-25032286)
chr3 (652-758)||(36478213-36478319)
chr3 (686-772)||(52308867-52308953)
chr3 (606-742)||(30136508-30136644)
chr3 (606-742)||(30142637-30142773)
chr3 (606-742)||(30146059-30146195)
chr3 (693-814)||(38572987-38573108)
chr3 (664-760)||(395922-396019)
chr3 (726-854)||(36477977-36478106)
chr3 (634-753)||(6714403-6714522)
chr3 (618-685)||(35504208-35504275)
chr3 (602-676)||(19832038-19832112)
chr3 (706-832)||(25070674-25070800)
chr3 (706-832)||(26903174-26903300)
chr3 (706-832)||(36617740-36617866)
chr3 (609-665)||(8034690-8034746)
chr3 (709-750)||(23794964-23795005)
[»] chr8 (20 HSPs)
chr8 (600-854)||(44873203-44873456)
chr8 (604-854)||(29866084-29866336)
chr8 (604-854)||(10381343-10381592)
chr8 (600-798)||(7681353-7681551)
chr8 (606-832)||(32161349-32161573)
chr8 (618-814)||(24556878-24557074)
chr8 (608-709)||(6978410-6978511)
chr8 (686-772)||(11993687-11993773)
chr8 (652-801)||(29841154-29841304)
chr8 (686-756)||(34696984-34697054)
chr8 (634-814)||(7388102-7388283)
chr8 (636-774)||(2148338-2148477)
chr8 (718-832)||(6802716-6802830)
chr8 (657-760)||(43421486-43421590)
chr8 (706-832)||(45486158-45486284)
chr8 (686-735)||(35990865-35990914)
chr8 (618-673)||(6802833-6802888)
chr8 (598-676)||(7392126-7392203)
chr8 (601-655)||(34697094-34697148)
chr8 (725-822)||(33235596-33235693)
[»] chr1 (16 HSPs)
chr1 (657-854)||(9539548-9539744)
chr1 (600-832)||(27464214-27464446)
chr1 (608-854)||(8064906-8065151)
chr1 (657-759)||(10781246-10781348)
chr1 (723-853)||(10781104-10781235)
chr1 (621-702)||(23347795-23347876)
chr1 (600-669)||(9539762-9539831)
chr1 (599-676)||(43909377-43909454)
chr1 (598-676)||(9516767-9516845)
chr1 (623-693)||(34912296-34912366)
chr1 (599-676)||(35438901-35438978)
chr1 (604-676)||(281148-281219)
chr1 (722-797)||(23353428-23353503)
chr1 (598-669)||(39299269-39299340)
chr1 (600-646)||(44352815-44352861)
chr1 (789-854)||(25031052-25031116)
[»] chr5 (16 HSPs)
chr5 (601-854)||(36744855-36745110)
chr5 (609-851)||(43144488-43144731)
chr5 (626-854)||(34751012-34751239)
chr5 (604-831)||(25818997-25819228)
chr5 (600-751)||(26459610-26459761)
chr5 (602-832)||(5069761-5069995)
chr5 (625-774)||(5568955-5569105)
chr5 (632-761)||(33824760-33824890)
chr5 (686-801)||(7607248-7607363)
chr5 (600-714)||(36633908-36634024)
chr5 (635-801)||(980137-980302)
chr5 (600-690)||(22536876-22536966)
chr5 (632-695)||(35676348-35676410)
chr5 (600-666)||(7607392-7607458)
chr5 (728-798)||(29670020-29670090)
chr5 (652-743)||(39509128-39509220)
[»] chr2 (13 HSPs)
chr2 (601-854)||(32032893-32033145)
chr2 (601-801)||(7700258-7700457)
chr2 (607-813)||(34878614-34878821)
chr2 (613-813)||(18703633-18703822)
chr2 (686-801)||(34190030-34190145)
chr2 (601-714)||(11562084-11562194)
chr2 (613-755)||(27447736-27447879)
chr2 (621-763)||(38417728-38417871)
chr2 (716-814)||(3357064-3357161)
chr2 (613-692)||(16639293-16639372)
chr2 (600-665)||(18458698-18458763)
chr2 (600-663)||(6141381-6141444)
chr2 (721-774)||(16639187-16639240)
[»] chr7 (26 HSPs)
chr7 (602-854)||(33941572-33941814)
chr7 (632-854)||(30074563-30074786)
chr7 (635-743)||(34346852-34346960)
chr7 (600-760)||(26824465-26824628)
chr7 (666-854)||(2945330-2945519)
chr7 (603-774)||(46090209-46090380)
chr7 (690-851)||(24658431-24658590)
chr7 (600-761)||(32221862-32222026)
chr7 (686-832)||(38300330-38300480)
chr7 (652-814)||(25232916-25233079)
chr7 (603-801)||(27080339-27080534)
chr7 (603-801)||(27197767-27197962)
chr7 (669-774)||(39785484-39785590)
chr7 (600-676)||(7899402-7899478)
chr7 (603-676)||(26050085-26050158)
chr7 (607-676)||(26059448-26059517)
chr7 (706-854)||(1691671-1691818)
chr7 (694-755)||(40716946-40717008)
chr7 (600-665)||(10702659-10702724)
chr7 (600-674)||(2945846-2945917)
chr7 (633-693)||(49143956-49144016)
chr7 (725-832)||(43265897-43266004)
chr7 (603-665)||(10703218-10703280)
chr7 (725-822)||(10512018-10512115)
chr7 (606-665)||(1691539-1691598)
chr7 (706-801)||(39780992-39781087)
[»] chr6 (13 HSPs)
chr6 (613-773)||(16461644-16461804)
chr6 (602-854)||(14607698-14607926)
chr6 (634-793)||(6689160-6689316)
chr6 (609-714)||(2919959-2920062)
chr6 (606-774)||(1975266-1975435)
chr6 (637-832)||(30705248-30705438)
chr6 (686-824)||(21883261-21883399)
chr6 (632-754)||(30702648-30702768)
chr6 (686-772)||(33704118-33704205)
chr6 (706-832)||(18816936-18817062)
chr6 (601-666)||(33704022-33704087)
chr6 (691-735)||(35188058-35188102)
chr6 (725-832)||(24901724-24901831)
[»] scaffold0002 (1 HSPs)
scaffold0002 (605-813)||(461302-461511)
[»] scaffold0311 (1 HSPs)
scaffold0311 (600-814)||(817-1027)
[»] scaffold0535 (1 HSPs)
scaffold0535 (635-811)||(9625-9800)


Alignment Details
Target: chr4 (Bit Score: 714; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 714; E-Value: 0
Query Start/End: Original strand, 17 - 912
Target Start/End: Original strand, 2813318 - 2814219
Alignment:
Q  17 tcttcatcacacgcatcttctctcgtcttcatcacacttattcccaatttttctgcagcaatttctctgtgttcctaatttttcccttcccaccttttct 116  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  2813318 tcttcatcacacgtatcttctctcgtcttcatcacacttattcccaatttttctgcagcaatttctttgtgatcctaatttttcccttcccaccttttct 2813417  T
Q  117 agatcaaaacactttgcttctgttcccaattgcttagacttgggatagtaattaattgtgggatattaattatctggacattcatcacgtgtggtgaaat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  2813418 agatcaaaacactttgcttctgttcccaattgcttagacttgggatagtaatttattgtgggatattaatcatctggacattcatcacgtgtggtgaaat 2813517  T
Q  217 gagtaggataaaagtagctctaaaacttcatatccaactccaagtgctatgagagtatctcctgaatggattgacattgagaaaatattgttttttctta 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2813518 gagtaggataaaagtagctctaaaacttcatatccaactccaagtgctatgagagtatctcctgaatggattgacattgagaaaatattgttttttctta 2813617  T
Q  317 tattcggatgaatggatccgaaaattttgatagctttttccatatggattggtgaatatatag-----agagtggtgcggtttttaataccattgagcta 411  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     ||||||||| ||||||||||||||||||||||    
T  2813618 tattcggatgaatggatccgaaaattttgataactttttccatatggattggtgaatatatagagagtagagtggtgtggtttttaataccattgagcta 2813717  T
Q  412 aagatgaagctcttcaaatctcaata--tcttcttnnnnnnnnnnncggtgtaatattttcttggactaattgaccattgccagtttgccgctcagcccn 509  Q
    ||||||||||||||||||||||||||  |||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2813718 aagatgaagctcttcaaatctcaatatctcttctt-aaaaaaaaaacggtgtaatattttcttggactaattgaccattgccagtttgccgctcagccca 2813816  T
Q  510 nnnnnnttattagtttaaagagtgtttcttttttcaccctcaaagtttctcgcatgcattataatatttcaaattatataatctaaaaatcaggggcgga 609  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  2813817 aaaaaattattagtttaaagagtgtttcttttttcaccctcaaagtttctcgcatgcattataatacttcaaattatataatctaaaaatcatgggcgga 2813916  T
Q  610 tccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatacatcacaa 709  Q
    | |||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2813917 ttcagacttttggtatatatggagctaaaatttcaaagaaacaataatgcaaactatattaaaaatatgaaataaaattgtttgatacaatacattacaa 2814016  T
Q  710 tgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacggtca 809  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  2814017 tgaaagtcgtctcatatccatttgttgaaaatgagctaaaataacatcattgcttattgttaaaacatcatatatttctatacaagttacaatacggtca 2814116  T
Q  810 tttagttactgatcacccatttttattatataggttactcttcactaggactggacaaaaat-aaatatccggcccaaaccggccaaaccgtatggaccg 908  Q
    ||||||||||||||| |||  ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  2814117 tttagttactgatcatcca-gtttattacataggttactcttcactaggactggacaaaaataaaatatccggcccaaaccggccaaactgtatggaccg 2814215  T
Q  909 aagg 912  Q
    ||||    
T  2814216 aagg 2814219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 600 - 759
Target Start/End: Original strand, 4377154 - 4377313
Alignment:
Q  600 caggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaa 699  Q
    ||||||| |||||||||||| |||| |||||| |||| |||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  4377154 caggggcagatccagactttaggtacatgtggagctataatttcaaagaaacaataatgcaaactatattaaaaataagaaataatattgtttgatacaa 4377253  T
Q  700 tacatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcat 759  Q
    ||||| ||||||||| |||||| |||||||||||||||||||||| |||||| |||||||    
T  4377254 tacattacaatgaaaatcgtcttatatccatttgttgaaaatgagttaaaatgacatcat 4377313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 608 - 854
Target Start/End: Original strand, 2158552 - 2158801
Alignment:
Q  608 gatccagacttttggtatatgtggggctaaaatttcaaagaaaca----atattgcaaactatattaaaaatatgaaataaaattgtttgatacaataca 703  Q
    |||| |||||||||||||||||  |||||||||||||||  || |    ||| |||||||||||||||||||| ||||||| ||||||||||||||||||    
T  2158552 gatctagacttttggtatatgtatggctaaaatttcaaaataaaataaaataatgcaaactatattaaaaataagaaataacattgtttgatacaataca 2158651  T
Q  704 tcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaata 803  Q
    | ||||||||| ||||||| ||||||||||||||||||||| |||||||| ||||||| | |||||||||| |  || | |||||||||| ||||||| |    
T  2158652 ttacaatgaaaatcgtctcctatccatttgttgaaaatgagctaaaataatatcattgctaattgttaaaagaagatctctttctatataggttacaaga 2158751  T
Q  804 cggtcatttagttactgatcacccatttttattatataggttactcttcac 854  Q
    |||||||||||  |   |||||||| |||| ||| ||||||||||||||||    
T  2158752 cggtcatttagccatcaatcaccca-ttttgttacataggttactcttcac 2158801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 603 - 759
Target Start/End: Original strand, 36247748 - 36247905
Alignment:
Q  603 gggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaa-tatgaaataaaattgtttgatacaata 701  Q
    ||||||||||||||||| |||| |||||| |||||||||| |||||||||||| |||||||||||||||||| || ||| | | ||||||||||||||||    
T  36247748 gggcggatccagactttaggtacatgtggagctaaaattttaaagaaacaataatgcaaactatattaaaaaataagaattcatattgtttgatacaata 36247847  T
Q  702 catcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcat 759  Q
    ||| ||||||||| ||||||||||||||||||||||||||||| |||||| |||||||    
T  36247848 cattacaatgaaaatcgtctcatatccatttgttgaaaatgagctaaaatgacatcat 36247905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 598 - 759
Target Start/End: Original strand, 33517945 - 33518107
Alignment:
Q  598 atcaggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatac 697  Q
    |||||||||||||| |||| || |||||||| || | |||||||| |||||||||||| | |||| ||||||||||||| ||||||| ||||||||||||    
T  33517945 atcaggggcggatctagacattaggtatatgcggagttaaaattttaaagaaacaataatacaaattatattaaaaataagaaataatattgtttgatac 33518044  T
Q  698 aatacatcacaatgaaagtcgtctcatatccatttgttg-aaaatgaggtaaaataacatcat 759  Q
    ||||||| ||||||||| |||||| |||||||||||| | |||||||| |||||| |||||||    
T  33518045 aatacattacaatgaaaatcgtcttatatccatttgtcgaaaaatgagctaaaatgacatcat 33518107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 623 - 801
Target Start/End: Original strand, 1111940 - 1112118
Alignment:
Q  623 tatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaataca-tcacaatgaaagtcgtct 721  Q
    ||||| || |||||||||||||| |||| |||| |||||||| |||||| |||| ||||||| |||||||||| | ||||| | ||||| ||| | ||||    
T  1111940 tatatatgtggctaaaatttcaatgaaataataatgcaaact-tattaataataagaaataacattgtttgatgcgatacaattacaatcaaaattgtct 1112038  T
Q  722 catatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaa 801  Q
    | ||||||||||||||||||||  ||||||||| || ||||| |||||||||| | ||| ||||||||||||||||||||    
T  1112039 cttatccatttgttgaaaatgatctaaaataacctcgttgttaattgttaaaagaacatgtatttctatataagttacaa 1112118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 724 - 854
Target Start/End: Original strand, 36247913 - 36248043
Alignment:
Q  724 tatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctata--taagttacaatacggtcatttagttactga 821  Q
    |||||||||||||||| |||| |||||| ||||||||||| |||||||||| | ||||| ||||||||  |||||||||| ||||||||||||  |||||    
T  36247913 tatccatttgttgaaa-tgagctaaaatgacatcattgttaattgttaaaagaacatatctttctatatgtaagttacaaaacggtcatttagccactga 36248011  T
Q  822 tcacccatttttattatataggttactcttcac 854  Q
    ||| ||| |||| ||| ||||||||||||||||    
T  36248012 tcatcca-ttttgttaaataggttactcttcac 36248043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 600 - 676
Target Start/End: Original strand, 51070314 - 51070390
Alignment:
Q  600 caggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaata 676  Q
    |||||||||||||| || ||| |||||||||||| ||||||||  || |||||||||||||||||||||||||||||    
T  51070314 caggggcggatccaaacatttagtatatgtggggttaaaattttgaaaaaacaatattgcaaactatattaaaaata 51070390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 657 - 714
Target Start/End: Complemental strand, 50723277 - 50723220
Alignment:
Q  657 tgcaaactatattaaaaatatgaaataaaattgtttgatacaatacatcacaatgaaa 714  Q
    |||||||||||||||||||| ||||||| ||||||||||| ||||||| |||||||||    
T  50723277 tgcaaactatattaaaaataagaaataacattgtttgatataatacattacaatgaaa 50723220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 604 - 668
Target Start/End: Original strand, 1758191 - 1758255
Alignment:
Q  604 ggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatat 668  Q
    |||||||| |||  ||||||| |||||||||||||||||||||||||||||| || |||||||||    
T  1758191 ggcggatctagatatttggtacatgtggggctaaaatttcaaagaaacaataatgtaaactatat 1758255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 724 - 824
Target Start/End: Complemental strand, 25023295 - 25023196
Alignment:
Q  724 tatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacggtcatttagttactgatc 823  Q
    |||| ||||||| |||||| | |||||||| ||||||| | |||||||||| | ||| |||||||||||||||||||| ||||| ||||||  |||||||    
T  25023295 tatctatttgtttaaaatgcgctaaaataa-atcattgctaattgttaaaagaacatctatttctatataagttacaagacggttatttagccactgatc 25023197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 724 - 793
Target Start/End: Original strand, 33518115 - 33518184
Alignment:
Q  724 tatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatata 793  Q
    ||||||| ||||||||||||| |||||| ||||||||| | |||||||||| | ||| ||||||||||||    
T  33518115 tatccatctgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacatctatttctatata 33518184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 735 - 854
Target Start/End: Original strand, 4377331 - 4377452
Alignment:
Q  735 tgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttc---tatataagttacaatacggtcatttagttactgatcacccattt 831  Q
    |||||||||| |||||| ||||||||| | |||||| ||| | ||| | |||    |||||||||||||| ||| ||||||||  |||||||||||| ||    
T  4377331 tgaaaatgagctaaaatgacatcattgctaattgtttaaagaacatcttttttctatatataagttacaagacgatcatttagccactgatcaccca-tt 4377429  T
Q  832 ttattatataggttactcttcac 854  Q
    || ||| ||||||||||||||||    
T  4377430 ttgttacataggttactcttcac 4377452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 600 - 655
Target Start/End: Original strand, 2185129 - 2185184
Alignment:
Q  600 caggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaata 655  Q
    |||||||||||||| ||||| ||||||||||| |||||||||||||| ||| ||||    
T  2185129 caggggcggatccaaactttaggtatatgtggagctaaaatttcaaataaataata 2185184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 632 - 772
Target Start/End: Complemental strand, 52849884 - 52849750
Alignment:
Q  632 ggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatacatcacaatgaaagtcgtctcatatccatt 731  Q
    ||||||||||| |||||||||||| | |||||||||||||||||        ||||||||| |||||||| || ||||||||| | || || |||| |||    
T  52849884 ggctaaaattttaaagaaacaataatacaaactatattaaaaat--------aaattgtttaatacaatatattacaatgaaaatggtttcctatcaatt 52849793  T
Q  732 tgttgaaaatgagg--taaaataacatcattgtttattgttaa 772  Q
    |||||| |||  ||  |||||||| ||||||| | ||||||||    
T  52849792 tgttgataatatggactaaaataatatcattgataattgttaa 52849750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 640
Target Start/End: Original strand, 13834129 - 13834166
Alignment:
Q  603 gggcggatccagacttttggtatatgtggggctaaaat 640  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  13834129 gggcggatccagacatttggtacatgtggggctaaaat 13834166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 6e-61; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 600 - 854
Target Start/End: Complemental strand, 26286012 - 26285756
Alignment:
Q  600 caggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaa---caatattgcaaactatattaaaaatatgaaataaaattgtttgata 696  Q
    |||||||||||||||||||| | ||||||||||||| |||||||||| |||   ||||| |||||||||||||||||||| ||||||| |||||||||||    
T  26286012 caggggcggatccagactttagatatatgtggggcttaaatttcaaaaaaatagcaataatgcaaactatattaaaaataagaaataacattgtttgata 26285913  T
Q  697 caatacatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagt 796  Q
    |||||||| ||||||||| |||| || ||||||||||||||||||||| |||||  ||||||||| | |||||||||| | ||||| |||||| ||| ||    
T  26285912 caatacattacaatgaaaatcgtttcctatccatttgttgaaaatgagttaaaaggacatcattgctaattgttaaaagaacatatctttctacatatgt 26285813  T
Q  797 tacaatacggtcatttagttactgatcacccatttttattatataggttactcttcac 854  Q
    ||||| || |||||||||  ||| |||||||| |||| ||| || |||||||||||||    
T  26285812 tacaagacagtcatttagccactaatcaccca-ttttgttacattggttactcttcac 26285756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 599 - 854
Target Start/End: Original strand, 7856413 - 7856670
Alignment:
Q  599 tcaggggcggatccagacttttggtata-tgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaa---ttgtttga 694  Q
    |||||||||||||| |||||| |||||| | ||| ||||||||||||||||||||||| |||||| |||||||||||||  ||||||||   ||||||||    
T  7856413 tcaggggcggatccggactttaggtataatttggagctaaaatttcaaagaaacaataatgcaaattatattaaaaataa-aaataaaaatattgtttga 7856511  T
Q  695 tacaatacatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataa 794  Q
    |||||||||| | ||| ||| ||||||| |||||||||||| |||||||| |||||| || |||||||| |||||||||| | ||| | |||||||||||    
T  7856512 tacaatacattataataaaaatcgtctcctatccatttgttaaaaatgagctaaaatgacgtcattgttaattgttaaaagaacatctctttctatataa 7856611  T
Q  795 gttacaatacggtcatttagttactgatcacccatttttattatataggttactcttcac 854  Q
    ||||||| || |||||||||  |||||||||||| |||| ||||||||||||||||||||    
T  7856612 gttacaagacagtcatttagccactgatcaccca-ttttgttatataggttactcttcac 7856670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 607 - 854
Target Start/End: Original strand, 24309801 - 24310047
Alignment:
Q  607 ggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatacatca 706  Q
    ||||||||||||| |||| ||| |  ||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||| |    
T  24309801 ggatccagactttaggtacatgcgaagctaaaatttcaaagaaacaataatgcaaactatattaaaaataagaaataatattgtttgatacaatacatta 24309900  T
Q  707 caatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacgg 806  Q
    |||||||| ||||||| |||||||||||||||||| ||  ||||| ||||||||||| |||||||||| | ||| | ||||||| |||||||||| ||      
T  24309901 caatgaaaatcgtctcctatccatttgttgaaaataagtcaaaatcacatcattgttaattgttaaaagaacatctctttctatgtaagttacaagacat 24310000  T
Q  807 tcatttagttactgatcacccatttttattatataggttactcttcac 854  Q
    |||||||   || ||||| ||| |||||||| ||| ||||||||||||    
T  24310001 tcatttaaccaccgatcatcca-ttttattacatatgttactcttcac 24310047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 600 - 851
Target Start/End: Original strand, 36475385 - 36475635
Alignment:
Q  600 caggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaa 699  Q
    ||||| |||||| ||| ||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||| ||||||| ||||||||||||||    
T  36475385 cagggacggatctagatttttggtatatgtggggttaaaatttcaaagaaacaataacgcaaactatattaaaaataagaaataacattgtttgatacaa 36475484  T
Q  700 tacatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttac 799  Q
    ||||  ||||||||| |||||||  || |||||||| ||||||||  ||||| ||||||||| | |||||||||| | ||| | ||| ||||||||||||    
T  36475485 tacactacaatgaaaatcgtctcccattcatttgttaaaaatgagcgaaaatgacatcattgctaattgttaaaagaacatctctttttatataagttac 36475584  T
Q  800 aatacggtcatttagttactgatcacccatttttattatataggttactctt 851  Q
    || |||||  ||||   ||||||||| || |||| ||| |||||||||||||    
T  36475585 aagacggttgtttatcaactgatcactca-ttttgttacataggttactctt 36475635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 600 - 832
Target Start/End: Original strand, 23778173 - 23778410
Alignment:
Q  600 caggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaa 699  Q
    |||| ||||||||||||||||| ||||| ||  | |||| ||||||||||| |||| | |||||||||||||||||| ||||||| ||||||||||||||    
T  23778173 caggagcggatccagacttttgatatatttgaagttaaattttcaaagaaaaaataatacaaactatattaaaaataagaaataacattgtttgatacaa 23778272  T
Q  700 tacatcaca-----atgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataa 794  Q
    ||||| |||     || ||| | ||||| ||||||||||||||||||||| |||||| ||||||||| | |||||||||| | ||| | |||||||||||    
T  23778273 tacattacattacaataaaaatggtctcttatccatttgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacatctctttctatataa 23778372  T
Q  795 gttacaatacggtcatttagttactgatcacccatttt 832  Q
    || |||| ||||| ||||||| ||||||||||||||||    
T  23778373 gtaacaaaacggttatttagtcactgatcacccatttt 23778410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 603 - 714
Target Start/End: Complemental strand, 25032286 - 25032175
Alignment:
Q  603 gggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatac 702  Q
    ||||||||| ||||||||| || ||||||||||||| |||||||| ||||||| |||||| || |||||||||| ||||||| |||||||||||||||||    
T  25032286 gggcggatctagacttttgatacatgtggggctaaattttcaaaggaacaataatgcaaattacattaaaaataagaaataacattgtttgatacaatac 25032187  T
Q  703 atcacaatgaaa 714  Q
    || |||||||||    
T  25032186 attacaatgaaa 25032175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 652 - 758
Target Start/End: Complemental strand, 36478319 - 36478213
Alignment:
Q  652 aatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatacatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaat 751  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||| | ||||| ||| | ||||   |||||||||||||||||||| ||||||    
T  36478319 aatattgcaaactatattaaaaataagaaataatattgtttgatacaatacgttacaattaaaattgtctttgatccatttgttgaaaatgagttaaaat 36478220  T
Q  752 aacatca 758  Q
     ||||||    
T  36478219 gacatca 36478213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 686 - 772
Target Start/End: Complemental strand, 52308953 - 52308867
Alignment:
Q  686 attgtttgatacaatacatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaa 772  Q
    ||||||||||||| ||||| ||||||||| || |||| ||||||||||||||||||||| |||||| ||||||||||| ||||||||    
T  52308953 attgtttgatacactacattacaatgaaaatcatctcctatccatttgttgaaaatgagctaaaatgacatcattgttaattgttaa 52308867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 606 - 742
Target Start/End: Original strand, 30136508 - 30136644
Alignment:
Q  606 cggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatac-at 704  Q
    |||||| |||| || |||||||||| | ||||||||| ||| ||| |||| ||||||| |||| ||||||| ||||||| ||||||||||||||||| ||    
T  30136508 cggatctagacattcggtatatgtgtgactaaaattttaaaaaaa-aataatgcaaacaatatgaaaaataagaaataacattgtttgatacaatacaat 30136606  T
Q  705 cacaatgaaagtcgtctcatatccatttgttgaaaatg 742  Q
      |||||||| | ||||| |||||||||||||||||||    
T  30136607 ttcaatgaaaatggtctcctatccatttgttgaaaatg 30136644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 606 - 742
Target Start/End: Original strand, 30142637 - 30142773
Alignment:
Q  606 cggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatac-at 704  Q
    |||||| |||| || |||||||||| | ||||||||| ||| ||| |||| ||||||| |||| ||||||| ||||||| ||||||||||||||||| ||    
T  30142637 cggatctagacattcggtatatgtgtgactaaaattttaaaaaaa-aataatgcaaacaatatgaaaaataagaaataacattgtttgatacaatacaat 30142735  T
Q  705 cacaatgaaagtcgtctcatatccatttgttgaaaatg 742  Q
      |||||||| | ||||| |||||||||||||||||||    
T  30142736 ttcaatgaaaatggtctcctatccatttgttgaaaatg 30142773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 606 - 742
Target Start/End: Original strand, 30146059 - 30146195
Alignment:
Q  606 cggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatac-at 704  Q
    |||||| |||| || |||||||||| | ||||||||| ||| ||| |||| ||||||| |||| ||||||| ||||||| ||||||||||||||||| ||    
T  30146059 cggatctagacattcggtatatgtgtgactaaaattttaaaaaaa-aataatgcaaacaatatgaaaaataagaaataacattgtttgatacaatacaat 30146157  T
Q  705 cacaatgaaagtcgtctcatatccatttgttgaaaatg 742  Q
      |||||||| | ||||| |||||||||||||||||||    
T  30146158 ttcaatgaaaatggtctcctatccatttgttgaaaatg 30146195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 693 - 814
Target Start/End: Original strand, 38572987 - 38573108
Alignment:
Q  693 gatacaatacatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatat 792  Q
    |||||||| ||| ||||||||| ||||||| ||||||||||||||||||||| |||||| ||| ||||| | |||||||| | | ||| | |||||||||    
T  38572987 gatacaatgcattacaatgaaaatcgtctcctatccatttgttgaaaatgagctaaaatgacagcattgctaattgttaatagaacatctctttctatat 38573086  T
Q  793 aagttacaatacggtcatttag 814  Q
    ||||||||  ||| ||||||||    
T  38573087 aagttacacgacgatcatttag 38573108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 664 - 760
Target Start/End: Complemental strand, 396019 - 395922
Alignment:
Q  664 tatattaaaaatatgaaataaaattgtttgatacaatacatc-acaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcatt 760  Q
    |||| |||||||| ||||||| |||||||||||||||||||  || |||||| | ||||   |||||||||||||||||||| |||||||||||||||    
T  396019 tatactaaaaataagaaataacattgtttgatacaatacatttacgatgaaaattgtctaccatccatttgttgaaaatgagctaaaataacatcatt 395922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 726 - 854
Target Start/End: Complemental strand, 36478106 - 36477977
Alignment:
Q  726 tccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttc--tatataagttacaatacggtcatttagttactgatc 823  Q
    ||||||| ||||||||||| |||||| ||||||||  | |||||||||| | ||| | ||||  |||||||||||||| |||  |||||||| |||||||    
T  36478106 tccatttcttgaaaatgagctaaaatgacatcattactaattgttaaaagaacatctttttctatatataagttacaaaacgaacatttagtcactgatc 36478007  T
Q  824 acccatttttattatataggttactcttcac 854  Q
    | ||| |||| ||| ||||||||||||||||    
T  36478006 atcca-ttttgttacataggttactcttcac 36477977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 634 - 753
Target Start/End: Complemental strand, 6714522 - 6714403
Alignment:
Q  634 ctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaataca-tcacaatgaaagtcgtctcatatccattt 732  Q
    ||||||||| ||||||| |||| ||  || ||||||||||||| ||||||| ||  ||||||  |||||| | ||||||||| | |||||||||| ||||    
T  6714522 ctaaaattttaaagaaataataatgttaattatattaaaaataagaaataacata-tttgatgtaatacaattacaatgaaaattgtctcatatctattt 6714424  T
Q  733 gttgaaaatgaggtaaaataa 753  Q
    |||||||||||  ||||||||    
T  6714423 gttgaaaatgaattaaaataa 6714403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 618 - 685
Target Start/End: Complemental strand, 35504275 - 35504208
Alignment:
Q  618 tttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaa 685  Q
    |||||| |||||| ||||||||||| ||||||| |||| |||||| ||||||||||||| || |||||    
T  35504275 tttggtgtatgtgtggctaaaatttaaaagaaaaaataatgcaaattatattaaaaataagacataaa 35504208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 602 - 676
Target Start/End: Complemental strand, 19832112 - 19832038
Alignment:
Q  602 ggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaata 676  Q
    ||||||||||||||| ||  | ||| ||| |||||||||||  ||||||||||| |||||| |||||||||||||    
T  19832112 ggggcggatccagacattaaggataagtgaggctaaaattttgaagaaacaataatgcaaattatattaaaaata 19832038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 706 - 832
Target Start/End: Complemental strand, 25070800 - 25070674
Alignment:
Q  706 acaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacg 805  Q
    ||||||||| ||||||   |||||||||||||||||||| || |||||||||| || | ||||| |||| | ||| | |||| ||| |||||||||  ||    
T  25070800 acaatgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaagccg 25070701  T
Q  806 gtcatttagttactgatcacccatttt 832  Q
     |||||||   | ||||||||||||||    
T  25070700 atcatttaaccattgatcacccatttt 25070674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 706 - 832
Target Start/End: Original strand, 26903174 - 26903300
Alignment:
Q  706 acaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacg 805  Q
    ||||||||| ||||||   |||||||||||||||||||| || |||||||||| || | ||||| |||| | ||| | |||| ||| |||||||||  ||    
T  26903174 acaatgaaaatcgtctgtcatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaagccg 26903273  T
Q  806 gtcatttagttactgatcacccatttt 832  Q
     |||||||   | ||||||||||||||    
T  26903274 atcatttaaccattgatcacccatttt 26903300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 706 - 832
Target Start/End: Complemental strand, 36617866 - 36617740
Alignment:
Q  706 acaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacg 805  Q
    ||||||||| ||||||   |||||||||||||||||||| || |||||||||| || | ||||| |||| | ||| | |||| ||| |||||||||  ||    
T  36617866 acaatgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaagccg 36617767  T
Q  806 gtcatttagttactgatcacccatttt 832  Q
     |||||||   | ||||||||||||||    
T  36617766 atcatttaaccattgatcacccatttt 36617740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 609 - 665
Target Start/End: Original strand, 8034690 - 8034746
Alignment:
Q  609 atccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaacta 665  Q
    ||||||||||| |||| |||||| |||||||||||||| ||| |||| |||||||||    
T  8034690 atccagactttaggtacatgtggagctaaaatttcaaataaataataatgcaaacta 8034746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 709 - 750
Target Start/End: Original strand, 23794964 - 23795005
Alignment:
Q  709 atgaaagtcgtctcatatccatttgttgaaaatgaggtaaaa 750  Q
    |||||| ||||||| ||||||||||||||||||||| |||||    
T  23794964 atgaaaatcgtctcttatccatttgttgaaaatgagctaaaa 23795005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 3e-60; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 600 - 854
Target Start/End: Original strand, 44873203 - 44873456
Alignment:
Q  600 caggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaa 699  Q
    ||||||||||| |||||||| |||| ||| || |||||||||| |||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  44873203 caggggcggattcagactttaggtacatgcggagctaaaattttaaagaaacaataatgcaaactatattaaaaataagaaataatattgtttgatacaa 44873302  T
Q  700 tacatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttac 799  Q
    ||||| ||||||||| ||||||  ||||||||||||||||||||| ||||||||||| |||| | |||||||||| | ||| | |||||||  |||||||    
T  44873303 tacattacaatgaaaatcgtcttctatccatttgttgaaaatgagttaaaataacatgattgctaattgttaaaagaacatctttttctatgcaagttac 44873402  T
Q  800 aatacggtcatttagttactgatcacccatttttattatataggttactcttcac 854  Q
    || | ||| |||||   ||| |||||||| |||| ||| ||||||||||||||||    
T  44873403 aagatggttatttaaccactaatcaccca-ttttgttacataggttactcttcac 44873456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 604 - 854
Target Start/End: Original strand, 29866084 - 29866336
Alignment:
Q  604 ggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaataca 703  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||| |||| |||||||||||||| ||||| ||||||| ||||||||||||||||||    
T  29866084 ggcggatccagacttttggtatatgtggggctaaacttttaaagaaaaaataatgcaaactatattataaataagaaataatattgtttgatacaataca 29866183  T
Q  704 tcacaatgaaa--gtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcat-atatttctatataagttaca 800  Q
    | |||||||||   || ||||  |||||||||||||||||||| |||||| |||||||| || ||| |||||| | |||  | ||||| |||| ||||||    
T  29866184 ttacaatgaaaatttcatctccgatccatttgttgaaaatgagctaaaatgacatcattattaatttttaaaagaacatcttttttctgtatatgttaca 29866283  T
Q  801 atacggtcatttagttactgatcacccatttttattatataggttactcttcac 854  Q
    | ||||||||||||  | |||||||||| |||| ||| ||||||||||||||||    
T  29866284 agacggtcatttagccattgatcaccca-ttttgttacataggttactcttcac 29866336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 604 - 854
Target Start/End: Original strand, 10381343 - 10381592
Alignment:
Q  604 ggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaataca 703  Q
    |||||||| |||  ||| |||| |||| |||||||||||||||||||||||| || ||||||||||||||||| ||| ||| ||||||||||| ||||||    
T  10381343 ggcggatctagatatttagtatttgtgaggctaaaatttcaaagaaacaataatgtaaactatattaaaaataagaagtaacattgtttgatataataca 10381442  T
Q  704 tcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaata 803  Q
    | ||||| ||| | ||||| |||| |||||||||||||||  |||||| ||||||||||| |||||||||| | ||| | ||| |||||||||||||| |    
T  10381443 ttacaatcaaaattgtctcttatctatttgttgaaaatgaactaaaatgacatcattgttaattgttaaaataacatctgtttatatataagttacaaaa 10381542  T
Q  804 cggtcatttagttactgatcacccatttttattatataggttactcttcac 854  Q
    | ||| |||||  |||||||||||| |||||||| ||| ||||||||||||    
T  10381543 cagtcgtttagccactgatcaccca-ttttattacataagttactcttcac 10381592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 600 - 798
Target Start/End: Complemental strand, 7681551 - 7681353
Alignment:
Q  600 caggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaa 699  Q
    |||||||||||| |||| ||||||||||||| || |||||||||||||||| |||| | |||||||||||||||| | ||||||| ||||||||||||||    
T  7681551 caggggcggatctagacatttggtatatgtgtggttaaaatttcaaagaaataataatacaaactatattaaaaacaagaaataacattgtttgatacaa 7681452  T
Q  700 tacatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagtta 798  Q
    || || ||||||||| |||| || |||||||||||||||||||   |||||| ||||||||| | |||||||||| | ||||| |||||||||||||||    
T  7681451 tatattacaatgaaaatcgtttcctatccatttgttgaaaatgttctaaaatgacatcattgctaattgttaaaagaacatatctttctatataagtta 7681353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 606 - 832
Target Start/End: Complemental strand, 32161573 - 32161349
Alignment:
Q  606 cggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatacatc 705  Q
    |||||| |||| |||| || |||||||||||||||||   ||||| |||| |||||| ||||||||||||| ||||||| |||||||||||||||||||     
T  32161573 cggatctagacatttgatacatgtggggctaaaattttggagaaaaaataatgcaaattatattaaaaataagaaataacattgtttgatacaatacatt 32161474  T
Q  706 acaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacg 805  Q
    | ||  ||| ||||||||||||  ||||||||||||||| ||||||||||||| |  | | |||||||| | ||| | ||| |||| ||||||||| ||     
T  32161473 ataactaaaatcgtctcatatc--tttgttgaaaatgagataaaataacatcaatactaaatgttaaaagaacatctctttttatacaagttacaagaca 32161376  T
Q  806 gtcatttagttactgatcacccatttt 832  Q
    |||||||||| ||| || |||||||||    
T  32161375 gtcatttagtcactaataacccatttt 32161349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 618 - 814
Target Start/End: Complemental strand, 24557074 - 24556878
Alignment:
Q  618 tttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatacatcacaatgaaagtc 717  Q
    |||| |||||||| ||  |||||||||||||||||||| |  ||| |||||||||||||  |||||| ||||||||||||||||||| ||||||||| ||    
T  24557074 tttgatatatgtgtggtaaaaatttcaaagaaacaataatttaaattatattaaaaataataaataacattgtttgatacaatacattacaatgaaaatc 24556975  T
Q  718 gtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacggtcatttag 814  Q
    |  |  |||||||||||||||||||| ||||| |  ||| |||| | |||||||||| |  |  | ||| |||||||||||||| ||||||||||||    
T  24556974 gatttctatccatttgttgaaaatgaagtaaattgtcattattgctaattgttaaaagaaaacttttttatatataagttacaagacggtcatttag 24556878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 608 - 709
Target Start/End: Complemental strand, 6978511 - 6978410
Alignment:
Q  608 gatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatacatcac 707  Q
    ||||||| |||||| |||||||||||||||| ||||||||||||| || || ||||||||||||||||| ||||||| ||||||||||| ||||||| ||    
T  6978511 gatccagtcttttgatatatgtggggctaaattttcaaagaaacagtaatgtaaactatattaaaaataagaaataatattgtttgatataatacattac 6978412  T
Q  708 aa 709  Q
    ||    
T  6978411 aa 6978410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 686 - 772
Target Start/End: Complemental strand, 11993773 - 11993687
Alignment:
Q  686 attgtttgatacaatacatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaa 772  Q
    ||||||||||||| ||||| |||||||||||| |||| ||| ||||||||||||||||| |||||| ||||||||||| ||||||||    
T  11993773 attgtttgatacactacattacaatgaaagtcatctcctatacatttgttgaaaatgagctaaaatgacatcattgttaattgttaa 11993687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 652 - 801
Target Start/End: Complemental strand, 29841304 - 29841154
Alignment:
Q  652 aatattgcaaactatattaaaaatatgaaataaaattgtttgatacaataca-tcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaa 750  Q
    |||| |||||||||||| ||||||| ||||||| ||||||||||| |||| | | | ||||||| | |||||||||| |||||||||||||| | |||||    
T  29841304 aataatgcaaactatataaaaaataagaaataacattgtttgatataatataattataatgaaaattgtctcatatctatttgttgaaaatgggttaaaa 29841205  T
Q  751 taacatcattgtttattgttaaaacatcatatatttctatataagttacaa 801  Q
    ||||| |  || | ||| |||||| | ||||| ||||||||||||||||||    
T  29841204 taacaacggtgctaatttttaaaagaacatatctttctatataagttacaa 29841154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 686 - 756
Target Start/End: Complemental strand, 34697054 - 34696984
Alignment:
Q  686 attgtttgatacaatacatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacat 756  Q
    |||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  34697054 attgtttgatacaatatattacaatgaaaatcgtctcatatccatttgttgaaaatgagataaaatgacat 34696984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 634 - 814
Target Start/End: Complemental strand, 7388283 - 7388102
Alignment:
Q  634 ctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaataca-tcacaatgaaagtcgtctcatatccattt 732  Q
    ||||||| ||| ||||| |||| |||| | ||||||||||||| ||| ||| ||||||||||  |||||| | ||||| ||| | ||||  | |||| ||    
T  7388283 ctaaaatatcagagaaaaaataatgcagattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaattgtcttctttccaatt 7388184  T
Q  733 gttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacggtcatttag 814  Q
    |||||||| | | |||||||| | ||||| | ||| |||||| | ||| |||||||||||||||||||| ||||||||||||    
T  7388183 gttgaaaacgtgctaaaataaaaacattgctaatttttaaaaaaacatttatttctatataagttacaagacggtcatttag 7388102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 636 - 774
Target Start/End: Original strand, 2148338 - 2148477
Alignment:
Q  636 aaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatac-atcacaatgaaagtcgtctcatatccatttgt 734  Q
    |||||||||||||||| ||| |||||| |||| |||||||| ||||||| |||| ||||| |||||| || ||||||||| |  |||  ||| |||||||    
T  2148338 aaaatttcaaagaaactataatgcaaattatactaaaaataagaaataacattgattgatgcaatacaattacaatgaaaataatctattatacatttgt 2148437  T
Q  735 tgaaaatgaggtaaaataacatcattgtttattgttaaaa 774  Q
    |||||| ||  ||||||| |||||||| | ||| ||||||    
T  2148438 tgaaaacgaactaaaatagcatcattgctaatttttaaaa 2148477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 718 - 832
Target Start/End: Complemental strand, 6802830 - 6802716
Alignment:
Q  718 gtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacggtcatttagtta 817  Q
    ||||| ||| |||||||| ||||||| ||||||| || |||||| | |||||||||| | ||| | ||| |||||||||||||| |||| |||||||  |    
T  6802830 gtctcctattcatttgttaaaaatgaagtaaaatgacttcattgctaattgttaaaataacatctctttttatataagttacaagacggacatttagcca 6802731  T
Q  818 ctgatcacccatttt 832  Q
    | |||||||||||||    
T  6802730 ccgatcacccatttt 6802716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 657 - 760
Target Start/End: Original strand, 43421486 - 43421590
Alignment:
Q  657 tgcaaactatattaaaaatatgaaataaaattgtttgatacaatac-atcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataaca 755  Q
    |||||||||||||||||||| | ||||| |||||||||| |||||| || ||||| ||| ||||||  |||| |||||||||||||||  |||||| |||    
T  43421486 tgcaaactatattaaaaataagtaataacattgtttgatgcaatacaattacaataaaaatcgtcttctatctatttgttgaaaatgaactaaaattaca 43421585  T
Q  756 tcatt 760  Q
     ||||    
T  43421586 acatt 43421590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 706 - 832
Target Start/End: Complemental strand, 45486284 - 45486158
Alignment:
Q  706 acaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacg 805  Q
    ||||||||| ||||||   |||||||||||||||||||| || |||||||||| || | ||||| |||| | ||| | |||| ||| |||||||||  ||    
T  45486284 acaatgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaagccg 45486185  T
Q  806 gtcatttagttactgatcacccatttt 832  Q
     |||||||   | ||||||||||||||    
T  45486184 atcatttaaccattgatcacccatttt 45486158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 686 - 735
Target Start/End: Complemental strand, 35990914 - 35990865
Alignment:
Q  686 attgtttgatacaatacatcacaatgaaagtcgtctcatatccatttgtt 735  Q
    ||||||||||||||||||| ||||||||| ||||||| |||| |||||||    
T  35990914 attgtttgatacaatacataacaatgaaaatcgtctcctatctatttgtt 35990865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 673
Target Start/End: Complemental strand, 6802888 - 6802833
Alignment:
Q  618 tttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaa 673  Q
    |||||||||| || | ||||||||  |||||||||||| |||||||||||||||||    
T  6802888 tttggtatatttgtgactaaaattagaaagaaacaataatgcaaactatattaaaa 6802833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 598 - 676
Target Start/End: Original strand, 7392126 - 7392203
Alignment:
Q  598 atcaggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaata 676  Q
    ||||||| ||||||||||| ||| |||||||| ||  ||||||||  |||||| |||| |||||| |||||||||||||    
T  7392126 atcagggacggatccagacatttagtatatgtaggt-taaaattttgaagaaataataatgcaaattatattaaaaata 7392203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 601 - 655
Target Start/End: Complemental strand, 34697148 - 34697094
Alignment:
Q  601 aggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaata 655  Q
    ||||||||||||||||||| |||| |||||| |||||||||| ||| ||| ||||    
T  34697148 aggggcggatccagactttaggtacatgtggagctaaaattttaaataaataata 34697094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 725 - 822
Target Start/End: Original strand, 33235596 - 33235693
Alignment:
Q  725 atccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacggtcatttagttactgat 822  Q
    |||||||||||||||||||| |||||||||| ||||| | |||| |  || | ||| | |||||||| ||||||||  ||| ||||||| | ||||||    
T  33235596 atccatttgttgaaaatgagctaaaataacaccattgctaattggttcaaaaacatctctttctataaaagttacacgacgttcatttaatcactgat 33235693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 1e-59; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 657 - 854
Target Start/End: Complemental strand, 9539744 - 9539548
Alignment:
Q  657 tgcaaactatattaaaaatatgaaataaaattgtttgatacaatacatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacat 756  Q
    |||||||||||||||||||||||||||| || |||||||||||||||| ||||||||| || |||| ||||||||||||||||||||| |||||||| ||    
T  9539744 tgcaaactatattaaaaatatgaaataacatcgtttgatacaatacattacaatgaaaatcatctcttatccatttgttgaaaatgagctaaaataatat 9539645  T
Q  757 cattgtttattgttaaaacatcatatatttctatataagttacaatacggtcatttagttactgatcacccatttttattatataggttactcttcac 854  Q
    ||||| |||||||||||| ||||||| ||| |||||||||||| ||||||||||||||| | |||||| ||| |||| ||| ||||||||||||||||    
T  9539644 cattgcttattgttaaaagatcatatctttttatataagttacgatacggtcatttagtcattgatcatcca-ttttgttacataggttactcttcac 9539548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 600 - 832
Target Start/End: Complemental strand, 27464446 - 27464214
Alignment:
Q  600 caggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaa 699  Q
    |||||| ||||| |||| ||||||| ||||| ||||||||||||||| |||||| | | ||||||||||| |||||| |||||||  |||||||||||||    
T  27464446 caggggaggatctagacatttggtacatgtgaggctaaaatttcaaataaacaacaatacaaactatatttaaaataagaaataacgttgtttgatacaa 27464347  T
Q  700 tacatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttac 799  Q
    ||||||||||| |||  |||||  |||| |||||||||||||||  |||||| || |||||||| |||||||||| |  || | ||||||||||||||||    
T  27464346 tacatcacaattaaaaccgtctattatctatttgttgaaaatgaactaaaatgacgtcattgttaattgttaaaagaatatctttttctatataagttac 27464247  T
Q  800 aatacggtcatttagttactgatcacccatttt 832  Q
    || ||||| ||||||  ||||||||||||||||    
T  27464246 aagacggttatttagccactgatcacccatttt 27464214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 608 - 854
Target Start/End: Original strand, 8064906 - 8065151
Alignment:
Q  608 gatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatacatcac 707  Q
    |||||||||||| | ||||||||||| ||||||   ||| || ||||| | |||||||||||||||||| ||||| | ||||||||||||||||||| ||    
T  8064906 gatccagactttagatatatgtggggttaaaataaaaaaaaaccaataatacaaactatattaaaaataagaaattacattgtttgatacaatacattac 8065005  T
Q  708 aatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacggt 807  Q
    ||||||| ||||||| |||||||| ||||| ||||||  ||||| ||||||||| | |||||||||| | ||| | ||| ||||||||||| || |||||    
T  8065006 aatgaaaatcgtctcctatccattggttgagaatgagcgaaaatgacatcattgctaattgttaaaagaacatctctttttatataagttataagacggt 8065105  T
Q  808 catttagttactgatcacccatttttattatataggttactcttcac 854  Q
    ||||||   | |||||| ||| |||||||| ||||||||||||||||    
T  8065106 catttaaccaatgatcatcca-ttttattacataggttactcttcac 8065151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 657 - 759
Target Start/End: Complemental strand, 10781348 - 10781246
Alignment:
Q  657 tgcaaactatattaaaaatatgaaataaaattgtttgatacaatacatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacat 756  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||| |||||| ||||| |||||||||||||| | |||||| ||||    
T  10781348 tgcaaactatattaaaaataagaaataatattgtttgatacaatacattacaatgaaaatcgtcttatatctatttgttgaaaatgtgctaaaatgacat 10781249  T
Q  757 cat 759  Q
    |||    
T  10781248 cat 10781246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 723 - 853
Target Start/End: Complemental strand, 10781235 - 10781104
Alignment:
Q  723 atatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttc--tatataagttacaatacggtcatttagttactg 820  Q
    |||||||||||||||||||||| |||||| | ||| ||| | |||||||||| | ||||| ||||  |||||||||||||| ||||||||||||  ||||    
T  10781235 atatccatttgttgaaaatgagttaaaatgaaatcgttgctaattgttaaaagaacatatctttctatatataagttacaagacggtcatttagccactg 10781136  T
Q  821 atcacccatttttattatataggttactcttca 853  Q
    |||||| | |||| ||| |||||||||||||||    
T  10781135 atcaccta-ttttgttacataggttactcttca 10781104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 621 - 702
Target Start/End: Original strand, 23347795 - 23347876
Alignment:
Q  621 ggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatac 702  Q
    |||||||||| ||||||||||||||| |||||||| |||||||||||||||| ||| ||||||| |||||||||| ||||||    
T  23347795 ggtatatgtgtggctaaaatttcaaataaacaataatgcaaactatattaaatataagaaataacattgtttgatgcaatac 23347876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 600 - 669
Target Start/End: Complemental strand, 9539831 - 9539762
Alignment:
Q  600 caggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatatt 669  Q
    ||||||||||||||||||||| ||||||||| |  ||||||||||||||||||||| |||||||||||||    
T  9539831 caggggcggatccagacttttagtatatgtgagattaaaatttcaaagaaacaataatgcaaactatatt 9539762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 599 - 676
Target Start/End: Complemental strand, 43909454 - 43909377
Alignment:
Q  599 tcaggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaata 676  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||  ||||||||||| |||||| |||||||||||||    
T  43909454 tcaggggcggatccagacatttagtatatgtgggactaaaattttgaagaaacaataatgcaaattatattaaaaata 43909377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 598 - 676
Target Start/End: Complemental strand, 9516845 - 9516767
Alignment:
Q  598 atcaggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaata 676  Q
    |||| |||||||||||||| ||| |||||| ||||||||||||||  ||||||||||| |||||| |||||||||||||    
T  9516845 atcaagggcggatccagacatttagtatatatggggctaaaattttgaagaaacaataatgcaaattatattaaaaata 9516767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 623 - 693
Target Start/End: Original strand, 34912296 - 34912366
Alignment:
Q  623 tatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttg 693  Q
    |||||| ||||||||||||| |||||||||||| | ||| |||||||||||||| ||||||||||| ||||    
T  34912296 tatatgcggggctaaaattttaaagaaacaataatacaagctatattaaaaataagaaataaaattatttg 34912366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 599 - 676
Target Start/End: Complemental strand, 35438978 - 35438901
Alignment:
Q  599 tcaggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaata 676  Q
    |||||||||||||||||| ||| ||||| | |||||||||| ||  ||||||||||| |||||| |||||||||||||    
T  35438978 tcaggggcggatccagacatttagtatacgcggggctaaaaatttgaagaaacaataatgcaaattatattaaaaata 35438901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 604 - 676
Target Start/End: Complemental strand, 281219 - 281148
Alignment:
Q  604 ggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaata 676  Q
    ||||||||| ||| ||| |||||||||||||||||||||  ||||||||||| |||||| |||||||||||||    
T  281219 ggcggatcc-gacatttagtatatgtggggctaaaattttgaagaaacaataatgcaaattatattaaaaata 281148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 722 - 797
Target Start/End: Original strand, 23353428 - 23353503
Alignment:
Q  722 catatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagtt 797  Q
    ||||| ||||||||||||||||| ||||||||||| |||| | | | |||||| | ||| | ||||||||||||||    
T  23353428 catattcatttgttgaaaatgagttaaaataacataattgctaaatattaaaagaacatttctttctatataagtt 23353503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 669
Target Start/End: Complemental strand, 39299340 - 39299269
Alignment:
Q  598 atcaggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatatt 669  Q
    ||||||| || ||| ||||||| |||| |||||| | |||||||| ||| |||||||| |||||||||||||    
T  39299340 atcagggtcgaatctagactttaggtacatgtggagttaaaattttaaaaaaacaataatgcaaactatatt 39299269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 600 - 646
Target Start/End: Complemental strand, 44352861 - 44352815
Alignment:
Q  600 caggggcggatccagacttttggtatatgtggggctaaaatttcaaa 646  Q
    |||||||||||| |||| ||| ||||||||| |||||||||||||||    
T  44352861 caggggcggatctagacatttagtatatgtgtggctaaaatttcaaa 44352815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 789 - 854
Target Start/End: Original strand, 25031052 - 25031116
Alignment:
Q  789 atataagttacaatacggtcatttagttactgatcacccatttttattatataggttactcttcac 854  Q
    ||||||||||||| || |||||||||| ||| |||||||| |||| ||| |||||||| |||||||    
T  25031052 atataagttacaagaccgtcatttagtcacttatcaccca-ttttgttacataggttaatcttcac 25031116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 6e-55; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 601 - 854
Target Start/End: Original strand, 36744855 - 36745110
Alignment:
Q  601 aggggcggatccagacttttggtatatgtggggctaaaa-tttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaa 699  Q
    |||| ||||| |||||||| |||| |||||| ||||||| ||| |||||||||||| ||||||||||||||||| || ||||||| ||||||||||||||    
T  36744855 agggacggattcagactttaggtacatgtggagctaaaaattttaaagaaacaataatgcaaactatattaaaagtaagaaataatattgtttgatacaa 36744954  T
Q  700 tacatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttc--tatataagtt 797  Q
    || || ||||| ||| |||||| |||||||||||||||||||||| |||||| ||||||||| | |||||||||| | ||| | ||||  ||||||||||    
T  36744955 taaattacaattaaaatcgtcttatatccatttgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacatctctttctatatataagtt 36745054  T
Q  798 acaatacggtcatttagttactgatcacccatttttattatataggttactcttcac 854  Q
    |||| ||||||||||||  || ||||||||| |||| ||| ||| ||||||||||||    
T  36745055 acaagacggtcatttagccaccgatcaccca-ttttgttacatatgttactcttcac 36745110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 609 - 851
Target Start/End: Original strand, 43144488 - 43144731
Alignment:
Q  609 atccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatacatcaca 708  Q
    |||||||||||||||||||||||||||||| ||||||| ||| |||  |||||||||||||| ||||| ||||||| ||||||||||||||||||| |||    
T  43144488 atccagacttttggtatatgtggggctaaactttcaaaaaaaaaattatgcaaactatattataaataagaaataacattgtttgatacaatacattaca 43144587  T
Q  709 atgaaa--gtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacgg 806  Q
    ||||||   || ||||  |||||||||||||||||||| |||| | ||||| ||||| |||||||||| | ||| | |||||||||| ||||||| || |    
T  43144588 atgaaaatttcttctccaatccatttgttgaaaatgagctaaagtgacatctttgttaattgttaaaagaacatctttttctatatatgttacaagacag 43144687  T
Q  807 tcatttagttactgatcacccatttttattatataggttactctt 851  Q
    ||||||||| | || ||||||| |||| ||| |||||||||||||    
T  43144688 tcatttagtcattggtcaccca-ttttgttacataggttactctt 43144731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 626 - 854
Target Start/End: Complemental strand, 34751239 - 34751012
Alignment:
Q  626 atgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatacatcacaatgaaagtcgtctcata 725  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||| ||| ||| ||||||||||||||||||| | ||||||| || |||| |     
T  34751239 atgtggggctaaaatttcaaagaaacaataatgcaaattatattaaaaataagaagtaacattgtttgatacaatacattaaaatgaaaatcatctcgtg 34751140  T
Q  726 tccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacggtcatttagttactgatcac 825  Q
    || |||||||||||||||| |||||| ||||||||| | ||||||||||   ||| | ||| |||||||||||||| ||||| ||||||  || |||||     
T  34751139 tctatttgttgaaaatgagctaaaatgacatcattgctaattgttaaaattacatctctttatatataagttacaaaacggttatttagccaccgatcat 34751040  T
Q  826 ccatttttattatataggttactcttcac 854  Q
    ||| |||| ||| || |||||||||||||    
T  34751039 cca-ttttgttacatgggttactcttcac 34751012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 604 - 831
Target Start/End: Original strand, 25818997 - 25819228
Alignment:
Q  604 ggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatat--tgcaaactatattaaaaatatgaaataaaattgtttgatacaata 701  Q
    |||||||| |||| ||||||| ||||||||||||||||||||||||| |||||  || ||||||||||||||||| ||||||| ||||||||| ||||||    
T  25818997 ggcggatctagacatttggtacatgtggggctaaaatttcaaagaaaaaatataatgtaaactatattaaaaataggaaataacattgtttgaaacaata 25819096  T
Q  702 catcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcata--tatttctatataagttac 799  Q
    ||| || |||||| | ||||| |||||||||||||||||| || ||||||||| | |||  | |  ||||||| | ||||  |||||||| |||||||||    
T  25819097 cattacgatgaaaattgtctcctatccatttgttgaaaataagctaaaataactttattactaacagttaaaagaacatatctatttctacataagttac 25819196  T
Q  800 aatacggtcatttagttactgatcacccattt 831  Q
    || ||||||||||||  | ||||| |||||||    
T  25819197 aagacggtcatttagccattgatctcccattt 25819228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 600 - 751
Target Start/End: Original strand, 26459610 - 26459761
Alignment:
Q  600 caggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaa 699  Q
    ||||| |||||| ||||||| |||| |||| | ||||||||||||||||||||||  ||||||| |||||||||||| |||| || ||||||||||||||    
T  26459610 cagggacggatcgagactttaggtacatgttgagctaaaatttcaaagaaacaattatgcaaaccatattaaaaataagaaagaacattgtttgatacaa 26459709  T
Q  700 tacatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaat 751  Q
    ||||| ||||||||| |||| || ||||||||||||||||||||| ||||||    
T  26459710 tacattacaatgaaaatcgtgtcctatccatttgttgaaaatgagctaaaat 26459761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 602 - 832
Target Start/End: Original strand, 5069761 - 5069995
Alignment:
Q  602 ggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaat- 700  Q
    |||| ||||| |||| ||||||| ||||||||| |||| || |||||||||||| || ||||||||||||||||| ||| ||| |||||||||||||||     
T  5069761 ggggtggatctagacatttggtacatgtggggcaaaaaatttaaagaaacaataatgtaaactatattaaaaataagaagtaatattgtttgatacaatt 5069860  T
Q  701 ---acatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagtt 797  Q
       || | ||||||||| || |||||| || |||||||||||||||| |||||| | ||||||||| |||||||||| | ||| | ||| |||||| |||    
T  5069861 aatacgttacaatgaaaatcatctcatgtctatttgttgaaaatgagttaaaatgatatcattgttaattgttaaaataacatctctttatatataggtt 5069960  T
Q  798 acaatacggtcatttagttactgatcacccatttt 832  Q
    |||| || ||| |||||  ||| |||||| |||||    
T  5069961 acaaaacagtcgtttagccactaatcaccaatttt 5069995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 625 - 774
Target Start/End: Original strand, 5568955 - 5569105
Alignment:
Q  625 tatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatac-atcacaatgaaagtcgtctca 723  Q
    |||||| ||||||||||| ||||||| |||| |||||||||||||||||||| ||||||| |||| ||||| |||||| || ||||||||| | |||||     
T  5568955 tatgtgtggctaaaatttaaaagaaaaaataatgcaaactatattaaaaataagaaataacattggttgatgcaatacaattacaatgaaaattgtctcg 5569054  T
Q  724 tatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaa 774  Q
    ||||||||||||||||||||| |||||||||| ||||| | ||| ||||||    
T  5569055 tatccatttgttgaaaatgagttaaaataacaacattgctaatttttaaaa 5569105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 632 - 761
Target Start/End: Complemental strand, 33824890 - 33824760
Alignment:
Q  632 ggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatac-atcacaatgaaagtcgtctcatatccat 730  Q
    ||||||||||| |||||||||||| |||||| ||||||||||||| ||||||| |||||||||| || ||| || ||||||||| ||||||| ||| |||    
T  33824890 ggctaaaattttaaagaaacaataatgcaaaatatattaaaaataagaaataacattgtttgatgcagtacaattacaatgaaaatcgtctcctattcat 33824791  T
Q  731 ttgttgaaaatgaggtaaaataacatcattg 761  Q
    |||||||||||||| ||||||||||||||||    
T  33824790 ttgttgaaaatgagttaaaataacatcattg 33824760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 686 - 801
Target Start/End: Complemental strand, 7607363 - 7607248
Alignment:
Q  686 attgtttgatacaatacatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatt 785  Q
    ||||||||||||||||||| ||||| ||| ||||||  ||||||||||||||||||||| |||||| ||||||||||| |||||||| | | ||| | ||    
T  7607363 attgtttgatacaatacattacaataaaaatcgtcttctatccatttgttgaaaatgagctaaaatgacatcattgttaattgttaatagaacatctctt 7607264  T
Q  786 tctatataagttacaa 801  Q
    ||||||||||||||||    
T  7607263 tctatataagttacaa 7607248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 600 - 714
Target Start/End: Complemental strand, 36634024 - 36633908
Alignment:
Q  600 caggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaac---tatattaaaaatatgaaataaaattgtttgata 696  Q
    ||||| |||||||||||||||  |||||||||||||||| |||||||||| ||||| | ||||    ||||||||||||| | ||||| |||||||||||    
T  36634024 cagggacggatccagacttttaatatatgtggggctaaattttcaaagaa-caataatacaaataattatattaaaaataagtaataacattgtttgata 36633926  T
Q  697 caatacatcacaatgaaa 714  Q
    |||||||| |||||||||    
T  36633925 caatacattacaatgaaa 36633908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 635 - 801
Target Start/End: Complemental strand, 980302 - 980137
Alignment:
Q  635 taaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatac-atcacaatgaaagtcgtctcatatccatttg 733  Q
    ||||||||  |||||| |||| |||||| ||||||||||||| ||||||| ||||||||||  ||||| || ||||| ||| || |||  |||| |||||    
T  980302 taaaattttgaagaaataataatgcaaattatattaaaaataagaaataacattgtttgatgtaatacaattacaataaaaatcatctattatctatttg 980203  T
Q  734 ttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaa 801  Q
    |||||||||   |||||||||||||||||| | | |||||| |  |||| ||||| ||||||||||||    
T  980202 ttgaaaatgtactaaaataacatcattgttaactattaaaaga--atatttttctctataagttacaa 980137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 600 - 690
Target Start/End: Original strand, 22536876 - 22536966
Alignment:
Q  600 caggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgt 690  Q
    ||||| |||||||||||||||| || ||||||| ||||| ||| |||||||||||| |||||||| ||||||||| | ||||||| |||||    
T  22536876 cagggacggatccagacttttgatacatgtgggactaaatttttaaagaaacaataatgcaaactgtattaaaaagaagaaataacattgt 22536966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 632 - 695
Target Start/End: Complemental strand, 35676410 - 35676348
Alignment:
Q  632 ggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgat 695  Q
    ||||||||||||||||||| |||| |||||||||||||||||||| ||||||| ||||| ||||    
T  35676410 ggctaaaatttcaaagaaa-aataatgcaaactatattaaaaataagaaataatattgtatgat 35676348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 600 - 666
Target Start/End: Complemental strand, 7607458 - 7607392
Alignment:
Q  600 caggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactat 666  Q
    |||||| ||||||||||||| |||| |||||| |||||||||||||| ||| |||| | ||||||||    
T  7607458 caggggtggatccagactttaggtacatgtggagctaaaatttcaaataaataataatacaaactat 7607392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 728 - 798
Target Start/End: Original strand, 29670020 - 29670090
Alignment:
Q  728 catttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagtta 798  Q
    |||||||||||||| || ||||||||||| |||| | |||||||||| | ||| | |||||||||||||||    
T  29670020 catttgttgaaaataagctaaaataacattattgataattgttaaaagaacatctttttctatataagtta 29670090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 652 - 743
Target Start/End: Original strand, 39509128 - 39509220
Alignment:
Q  652 aatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatac-atcacaatgaaagtcgtctcatatccatttgttgaaaatga 743  Q
    |||| |||||| ||||| ||||||| || |||| ||||||||||||||||| || ||||||||| | ||||   ||| |||||||||||||||    
T  39509128 aataatgcaaattatatgaaaaataagatataacattgtttgatacaatacaattacaatgaaaattgtcttccatcaatttgttgaaaatga 39509220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 6e-55; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 601 - 854
Target Start/End: Original strand, 32032893 - 32033145
Alignment:
Q  601 aggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaat 700  Q
    |||||||||||||||||||||||| ||||| ||||||| ||| ||| |||||||| | ||| |||||||||||||| ||||||| |||||||||||||||    
T  32032893 aggggcggatccagacttttggtacatgtgaggctaaatttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaat 32032992  T
Q  701 acatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttaca 800  Q
    |||| | ||||||| ||||| | |||||||||||| |||||||| |||||| |||||| |  | |||||||||| | ||| | |||||||||||||||||    
T  32032993 acattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttaca 32033092  T
Q  801 atacggtcatttagttactgatcacccatttttattatataggttactcttcac 854  Q
    | | ||||| ||||| | |||||| ||| |||| ||| ||||||||||||||||    
T  32033093 agatggtcaattagtcagtgatcatcca-ttttgttacataggttactcttcac 32033145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 601 - 801
Target Start/End: Original strand, 7700258 - 7700457
Alignment:
Q  601 aggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaat 700  Q
    ||||||||||| | || |||| |||||||| |||||||||||||||||||||||| || ||||||||| ||||||| ||||||| |||||||||||||||    
T  7700258 aggggcggatctacacatttgatatatgtgtggctaaaatttcaaagaaacaataatgtaaactatataaaaaataagaaataacattgtttgatacaat 7700357  T
Q  701 acatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttaca 800  Q
    ||||  |||||||| || |||||||| ||| ||||||||||||| |||||| ||||||||| | |||||||||| | ||| | |||||||||||||||||    
T  7700358 acattgcaatgaaaatcatctcatattcatatgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacat-tctttctatataagttaca 7700456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 607 - 813
Target Start/End: Complemental strand, 34878821 - 34878614
Alignment:
Q  607 ggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaatt-gtttgatacaatacatc 705  Q
    ||||| |||| |||||||||| |||||||||||||| |||||||||||| || | |||||| |||||||| ||||||| ||| ||||||||||||  ||     
T  34878821 ggatctagacatttggtatatatggggctaaaattttaaagaaacaataatgaagactatactaaaaataagaaataagatttgtttgatacaatgaatt 34878722  T
Q  706 acaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacg 805  Q
    |||||  || |  | |||||| ||||||||||||||||| |||||  || |||||||| |||||||||| | |||||||||||||||||||||||| |||    
T  34878721 acaatataaattctttcatattcatttgttgaaaatgagttaaaaagacgtcattgttaattgttaaaagaacatatatttctatataagttacaagacg 34878622  T
Q  806 gtcattta 813  Q
     |||||||    
T  34878621 atcattta 34878614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 613 - 813
Target Start/End: Complemental strand, 18703822 - 18703633
Alignment:
Q  613 agacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatacatcacaatga 712  Q
    |||| |||| |||| ||| |||||||||||||||||||||||| ||||||||||||||||||||       | |||||||||| ||||     |||||||    
T  18703822 agacatttgatatacgtgtggctaaaatttcaaagaaacaataatgcaaactatattaaaaata-------acattgtttgatgcaatt----acaatga 18703734  T
Q  713 aagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacggtcattt 812  Q
    || | ||||| |||||||||||| ||||||||  ||||||| | ||||| | |||||||||| | ||| | |||||| ||||||||||| ||||||||||    
T  18703733 aaattgtctcctatccatttgttaaaaatgagcaaaaataaaaacattgctaattgttaaaagaacatctctttctaaataagttacaagacggtcattt 18703634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 686 - 801
Target Start/End: Original strand, 34190030 - 34190145
Alignment:
Q  686 attgtttgatacaatacatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatt 785  Q
    ||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||  |||||| | ||||||| | |||||||| | | ||| | ||    
T  34190030 attgtttgatacaatacattacaatgaaaatcgtctcctatccatttgttgaaaatgaactaaaatgatatcattgctaattgttaatagaacatctctt 34190129  T
Q  786 tctatataagttacaa 801  Q
    ||||||||||||||||    
T  34190130 tctatataagttacaa 34190145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 601 - 714
Target Start/End: Original strand, 11562084 - 11562194
Alignment:
Q  601 aggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaat 700  Q
    ||||||||||||||||||||| || ||||| ||||| | |||||||||||||||| ||||   ||||||||||||| ||||||| ||||||||||||| |    
T  11562084 aggggcggatccagacttttgatacatgtgaggctagattttcaaagaaacaataatgca---tatattaaaaataagaaataacattgtttgatacagt 11562180  T
Q  701 acatcacaatgaaa 714  Q
    |||| |||| ||||    
T  11562181 acattacaacgaaa 11562194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 613 - 755
Target Start/End: Complemental strand, 27447879 - 27447736
Alignment:
Q  613 agacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatac-atcacaatg 711  Q
    |||| |||| |||||||| ||||||||||||||||||| |||| |||| | ||| ||||||||| ||||||| ||||||||||  ||||| || ||||||    
T  27447879 agacatttgatatatgtgtggctaaaatttcaaagaaaaaataatgcagattatgttaaaaataagaaataatattgtttgatgtaatacaattacaatg 27447780  T
Q  712 aaagtcgtctcatatccatttgttgaaaatgaggtaaaataaca 755  Q
    ||| | |||||||||| |||| ||| ||| ||| ||||||||||    
T  27447779 aaaattgtctcatatctatttattggaaacgagctaaaataaca 27447736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 621 - 763
Target Start/End: Original strand, 38417728 - 38417871
Alignment:
Q  621 ggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatac-atcacaatgaaagtcgt 719  Q
    |||||||||| | ||||||||| ||||||| | || ||||| |||||||||||||| |||||||  ||| ||||| |||||| || ||| ||||| | ||    
T  38417728 ggtatatgtgtgcctaaaattttaaagaaaaactaatgcaagctatattaaaaataagaaataactttggttgatgcaatacaattacagtgaaaattgt 38417827  T
Q  720 ctcatatccatttgttgaaaatgaggtaaaataacatcattgtt 763  Q
    ||| ||||||||||||||||||||  ||||||| || |||||||    
T  38417828 ctcctatccatttgttgaaaatgatttaaaatagcaacattgtt 38417871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 716 - 814
Target Start/End: Complemental strand, 3357161 - 3357064
Alignment:
Q  716 tcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacggtcatttag 814  Q
    ||||||| ||||||||||||||||||||| |||||| ||||||||| | |||||||||| | ||| | |||||||||||||||||| ||||| ||||||    
T  3357161 tcgtctcctatccatttgttgaaaatgagataaaatgacatcattgctaattgttaaaa-aacatctctttctatataagttacaagacggtgatttag 3357064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 613 - 692
Target Start/End: Complemental strand, 16639372 - 16639293
Alignment:
Q  613 agacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgttt 692  Q
    |||| ||||||||||||  | ||||||||| |||||||||||| | |||||||||||||||||| ||||| | |||||||    
T  16639372 agacatttggtatatgtatgactaaaattttaaagaaacaataatacaaactatattaaaaataagaaattacattgttt 16639293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 600 - 665
Target Start/End: Original strand, 18458698 - 18458763
Alignment:
Q  600 caggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaacta 665  Q
    ||||||||||||||| |||| ||||||||||| |||||||| ||||| ||| |||| |||||||||    
T  18458698 caggggcggatccaggctttaggtatatgtggagctaaaatgtcaaataaataataatgcaaacta 18458763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 600 - 663
Target Start/End: Original strand, 6141381 - 6141444
Alignment:
Q  600 caggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaac 663  Q
    ||||||| |||||||||||| |||| |||||| |||||||||||||| ||| |||| |||||||    
T  6141381 caggggcagatccagactttaggtacatgtggagctaaaatttcaaataaataataatgcaaac 6141444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 721 - 774
Target Start/End: Complemental strand, 16639240 - 16639187
Alignment:
Q  721 tcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaa 774  Q
    ||||||||||||||||||||| |  ||||||| |||||||||| ||||||||||    
T  16639240 tcatatccatttgttgaaaatcaactaaaatagcatcattgttgattgttaaaa 16639187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 2e-48; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 602 - 854
Target Start/End: Complemental strand, 33941814 - 33941572
Alignment:
Q  602 ggggcggatccagacttttggtatatgtggggctaaaat-ttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaat 700  Q
    |||||||||||||||||| ||||||||||| |||||||  || ||| |||||||| | |||||||||||||||||| ||||||| ||||||||||| |||    
T  33941814 ggggcggatccagactttaggtatatgtggagctaaaaaatttaaaaaaacaataatacaaactatattaaaaataagaaataacattgtttgataaaat 33941715  T
Q  701 acatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttaca 800  Q
    |||| |||||         ||| |||| |||||||||||||||| |||||||||||||||| | |||||||||| | ||| | |||||||||||||||||    
T  33941714 acattacaat---------ctcctatcaatttgttgaaaatgagttaaaataacatcattgctaattgttaaaagaacatttctttctatataagttaca 33941624  T
Q  801 atacggtcatttagttactgatcacccatttttattatataggttactcttcac 854  Q
    | ||||||||||||  |||||| |||||  ||||||| ||||| ||||||||||    
T  33941623 agacggtcatttagccactgattaccca--tttattacataggctactcttcac 33941572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 632 - 854
Target Start/End: Complemental strand, 30074786 - 30074563
Alignment:
Q  632 ggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatacatcacaatgaaagtc--gtctcatatcca 729  Q
    ||||||| |||||||||||  ||| |||||| ||||||||||||| |||| || || |||||||||||||||| ||||| ||| ||  ||||| ||||||    
T  30074786 ggctaaattttcaaagaaaagataatgcaaattatattaaaaataagaaacaacatcgtttgatacaatacattacaatcaaaatctcgtctcctatcca 30074687  T
Q  730 tttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacggtcatttagttactgatcacccat 829  Q
    |||||||||||| || |||||| ||||||||||| |||||||||| | ||| | |||||||||||||||||| | ||||||||||  | ||||||| ||     
T  30074686 tttgttgaaaataagttaaaatgacatcattgttaattgttaaaagaacatctctttctatataagttacaagatggtcatttagccattgatcactca- 30074588  T
Q  830 ttttattatataggttactcttcac 854  Q
    |||| ||| ||||||||||||||||    
T  30074587 ttttgttacataggttactcttcac 30074563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 635 - 743
Target Start/End: Complemental strand, 34346960 - 34346852
Alignment:
Q  635 taaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatacatcacaatgaaagtcgtctcatatccatttgt 734  Q
    ||||||||||||||||||||| ||||||||| |||||||||| ||||||| ||||||| ||||||||||| | | ||||| |||||||||||||||||||    
T  34346960 taaaatttcaaagaaacaataatgcaaactacattaaaaataagaaataacattgttttatacaatacattaaagtgaaaatcgtctcatatccatttgt 34346861  T
Q  735 tgaaaatga 743  Q
     ||||||||    
T  34346860 ggaaaatga 34346852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 600 - 760
Target Start/End: Complemental strand, 26824628 - 26824465
Alignment:
Q  600 caggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatatt--gcaaactatattaaaaatatgaaataaaattgtttgatac 697  Q
    ||||||| ||||||||| |||| |||||||  | ||| |||| ||||||||||||| |  | |||||| |||||||||| ||||||| ||| |||||| |    
T  26824628 caggggccgatccagacatttgatatatgtatgactacaattccaaagaaacaataatatgtaaactaaattaaaaataagaaataatattatttgatgc 26824529  T
Q  698 aataca-tcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcatt 760  Q
    |||||| | ||||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||    
T  26824528 aatacaattacaatgaaaatcgtctcctatcgatttgttgaaaatgaggtaaaataatatcatt 26824465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 666 - 854
Target Start/End: Complemental strand, 2945519 - 2945330
Alignment:
Q  666 tattaaaaatatgaaataaaattgtttgatacaatacatcacaatgaaa--gtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtt 763  Q
    ||||||||||| ||||||| ||||||||||||||||||| ||||| |||   ||||||| |||| |||||||||||||||  |||||| ||||||||| |    
T  2945519 tattaaaaataagaaataacattgtttgatacaatacattacaataaaaatctcgtctcctatctatttgttgaaaatgacctaaaatgacatcattgct 2945420  T
Q  764 tattgttaaaacatcatatatttctatataagttacaatacggtcatttagttactgatcacccatttttattatataggttactcttcac 854  Q
     |||||||||| |  ||   |||||||||||| ||||| ||| |||||||   |||||||| ||| |||| |||| |||||||||||||||    
T  2945419 aattgttaaaagaaaatcactttctatataagctacaagacgatcatttaaccactgatcatcca-ttttgttatgtaggttactcttcac 2945330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 603 - 774
Target Start/End: Complemental strand, 46090380 - 46090209
Alignment:
Q  603 gggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatac 702  Q
    ||||||||  |||| |||| ||||||||   |||| ||| ||||||||||||  | ||||||||||||||||||  |||||| |||||||| ||| ||||    
T  46090380 gggcggataaagacatttgatatatgtgtaactaatattacaaagaaacaatgatacaaactatattaaaaataaaaaataacattgtttggtacgatac 46090281  T
Q  703 atcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaa 774  Q
    || ||||||||| ||||||||||| ||||||||||||||||  |||||| ||||| ||  | ||||||||||    
T  46090280 attacaatgaaaatcgtctcatattcatttgttgaaaatgaattaaaatgacatccttagtaattgttaaaa 46090209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 690 - 851
Target Start/End: Original strand, 24658431 - 24658590
Alignment:
Q  690 tttgatacaatacatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttcta 789  Q
    |||||||||||| || ||||||||| |||| || ||||||||||||||||||||| |||||| |||||||||  || |||||| | | ||| | ||||||    
T  24658431 tttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagttaaaatgacatcattg-ctaatgttaatagaacatctctttcta 24658529  T
Q  790 tataagttacaatacggtcatttagttactgatcacccatttttattatataggttactctt 851  Q
    |||||||||||| ||||||||||||  || ||||| ||| |||| ||| |||||||||||||    
T  24658530 tataagttacaagacggtcatttagccaccgatcatcca-ttttgttacataggttactctt 24658590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 600 - 761
Target Start/End: Complemental strand, 32222026 - 32221862
Alignment:
Q  600 caggggcggatccagacttttggtatatgtggggctaaaatttcaaagaa-acaatattgcaaactatattaaaaatatgaaataaaattgtttgataca 698  Q
    ||||||||||||||||||||| ||| ||||||||||||| ||| ||| || | |||| || | | ||||||||||||| ||||||| |||||||| ||||    
T  32222026 caggggcggatccagactttttgtacatgtggggctaaatttttaaaaaataaaataatgtatattatattaaaaataagaaataacattgtttggtaca 32221927  T
Q  699 atacatcacaatgaaagtc--gtctcatatccatttgttgaaaatgaggtaaaataacatcattg 761  Q
    ||| || ||| ||| | ||  ||||| ||||||||||||||||||||| |||||| |||||||||    
T  32221926 ataaattacattgagaatctcgtctcctatccatttgttgaaaatgagttaaaatgacatcattg 32221862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 686 - 832
Target Start/End: Complemental strand, 38300480 - 38300330
Alignment:
Q  686 attgtttgatacaatacatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatt 785  Q
    |||||||||||||||  || ||||||||| ||||||| ||||||||||||||||||||| |||||| ||| ||||| | |||||||| | | ||| ||||    
T  38300480 attgtttgatacaatgtattacaatgaaaatcgtctcctatccatttgttgaaaatgagctaaaatgacagcattgataattgttaataaaacatctatt 38300381  T
Q  786 tctatat----aagttacaatacggtcatttagttactgatcacccatttt 832  Q
    |||||||    ||||||||| ||||||||||||  |||||||| |||||||    
T  38300380 tctatataagtaagttacaagacggtcatttagccactgatcatccatttt 38300330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 652 - 814
Target Start/End: Original strand, 25232916 - 25233079
Alignment:
Q  652 aatattgcaaactatattaaaaatatgaaataaaattgtttgatacaata-catcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaa 750  Q
    |||| |||||||||||| ||||||| ||||||| ||||||||||||||||  || ||||||||| | ||||| ||||||||||||||||||||| |||||    
T  25232916 aataatgcaaactatatgaaaaataagaaataacattgtttgatacaatataattacaatgaaaattgtctcctatccatttgttgaaaatgagttaaaa 25233015  T
Q  751 taacatcattgtttattgttaaaacatcatatatttctatataagttacaatacggtcatttag 814  Q
    ||||| |  || | ||| |||||| | ||| | ||| ||||||| |||||| ||| ||||||||    
T  25233016 taacagcgctgctaatttttaaaagaacatttctttttatataaattacaagacgatcatttag 25233079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 603 - 801
Target Start/End: Original strand, 27080339 - 27080534
Alignment:
Q  603 gggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatac 702  Q
    ||||||||  |||| ||||||| |  ||||| ||||||||||| |||||||||    ||||||| ||||||||| ||||||  |||||||||||||||||    
T  27080339 gggcggattaagacatttggtacaaatggggataaaatttcaatgaaacaataaattaaactatgttaaaaataagaaatatcattgtttgatacaatac 27080438  T
Q  703 atcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaa 801  Q
    |  ||||| | | ||||||| |||  |||||||||||||||| |||||| |||||| || | |||||||||| | ||||| ||| ||||||||||||||    
T  27080439 a--acaataacaatcgtctcctatttatttgttgaaaatgagctaaaatgacatca-tgctaattgttaaaagaacatatctttttatataagttacaa 27080534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 603 - 801
Target Start/End: Complemental strand, 27197962 - 27197767
Alignment:
Q  603 gggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatac 702  Q
    ||||||||  |||| ||||||| |  ||||| ||||||||||| |||||||||    ||||||| ||||||||| ||||||  |||||||||||||||||    
T  27197962 gggcggattaagacatttggtacaaatggggataaaatttcaatgaaacaataaattaaactatgttaaaaataagaaatatcattgtttgatacaatac 27197863  T
Q  703 atcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaa 801  Q
    |  ||||| | | ||||||| |||  |||||||||||||||| |||||| |||||| || | |||||||||| | ||||| ||| ||||||||||||||    
T  27197862 a--acaataacaatcgtctcctatttatttgttgaaaatgagctaaaatgacatca-tgctaattgttaaaagaacatatctttttatataagttacaa 27197767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 669 - 774
Target Start/End: Original strand, 39785484 - 39785590
Alignment:
Q  669 taaaaatatgaaataaaattgtttgatacaataca-tcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttatt 767  Q
    |||||||| ||||||| |||||||||| ||||||| | ||||||||| ||||||  |||||||||||| |||||||| |||||||||| ||||| | |||    
T  39785484 taaaaataagaaataacattgtttgatgcaatacaattacaatgaaaatcgtctactatccatttgttaaaaatgagctaaaataacaacattgataatt 39785583  T
Q  768 gttaaaa 774  Q
    |||||||    
T  39785584 gttaaaa 39785590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 600 - 676
Target Start/End: Original strand, 7899402 - 7899478
Alignment:
Q  600 caggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaata 676  Q
    |||||||||||||| || ||| |||||||||||||||||||||  ||||||||||| |||||| |||||||||||||    
T  7899402 caggggcggatccaaacatttagtatatgtggggctaaaattttgaagaaacaataatgcaaattatattaaaaata 7899478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 603 - 676
Target Start/End: Original strand, 26050085 - 26050158
Alignment:
Q  603 gggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaata 676  Q
    |||||||||||||| |||  ||||||||||||||||||||  ||||||||||| |||||| |||||||||||||    
T  26050085 gggcggatccagacatttaatatatgtggggctaaaattttgaagaaacaataatgcaaattatattaaaaata 26050158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 607 - 676
Target Start/End: Original strand, 26059448 - 26059517
Alignment:
Q  607 ggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaata 676  Q
    |||||||||| |||  ||||||||||||||||||||  ||||||||||| |||||| |||||||||||||    
T  26059448 ggatccagacatttaatatatgtggggctaaaattttgaagaaacaataatgcaaattatattaaaaata 26059517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 706 - 854
Target Start/End: Original strand, 1691671 - 1691818
Alignment:
Q  706 acaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacg 805  Q
    |||||| || || |||| ||||||||||||||||||||| |||||| | ||||||||| |||||||| | | ||| | ||| |||||||||||||| ||     
T  1691671 acaatgtaaatcatctcctatccatttgttgaaaatgagttaaaatgatatcattgttaattgttaatagaacatctctttatatataagttacaagaca 1691770  T
Q  806 gtcatttagttactgatcacccatttttattatataggttactcttcac 854  Q
    | | ||||   |||||||| ||| |||| ||| ||| ||||||||||||    
T  1691771 gccgtttatccactgatca-ccaattttgttacatatgttactcttcac 1691818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 755
Target Start/End: Complemental strand, 40717008 - 40716946
Alignment:
Q  694 atacaataca-tcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataaca 755  Q
    |||||||||| | ||||| ||| | ||||||||||||||||||||||||||||||||||||||    
T  40717008 atacaatacaattacaataaaaattgtctcatatccatttgttgaaaatgaggtaaaataaca 40716946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 600 - 665
Target Start/End: Original strand, 10702659 - 10702724
Alignment:
Q  600 caggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaacta 665  Q
    ||||||||||||| |||||| ||||||||||| |||||||| ||||| ||| |||| |||||||||    
T  10702659 caggggcggatcctgactttaggtatatgtggagctaaaatgtcaaataaataataatgcaaacta 10702724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 600 - 674
Target Start/End: Complemental strand, 2945917 - 2945846
Alignment:
Q  600 caggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaa 674  Q
    ||||||||||||||||||||||||| ||  | ||||||| |||||||||   |||| ||||||||||||||||||    
T  2945917 caggggcggatccagacttttggtacatacgaggctaaattttcaaaga---aataatgcaaactatattaaaaa 2945846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 633 - 693
Target Start/End: Original strand, 49143956 - 49144016
Alignment:
Q  633 gctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttg 693  Q
    |||||||||| ||||||| |||| | |||||||||||||||||| ||||||| ||||||||    
T  49143956 gctaaaattttaaagaaaaaataatacaaactatattaaaaataagaaataacattgtttg 49144016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 725 - 832
Target Start/End: Complemental strand, 43266004 - 43265897
Alignment:
Q  725 atccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacggtcatttagttactgatca 824  Q
    |||||||||||||||||||| || |||||||||| || | ||||| |||| | ||| | |||||||| |||||||||  || |||||||   | ||||||    
T  43266004 atccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttctataaaagttacaagccgatcatttaaccattgatca 43265905  T
Q  825 cccatttt 832  Q
    ||||||||    
T  43265904 cccatttt 43265897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 603 - 665
Target Start/End: Complemental strand, 10703280 - 10703218
Alignment:
Q  603 gggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaacta 665  Q
    ||||||||||||||||| ||||||||||| | |||||| ||||| ||| |||| |||||||||    
T  10703280 gggcggatccagactttaggtatatgtggagttaaaatgtcaaataaataataatgcaaacta 10703218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 725 - 822
Target Start/End: Complemental strand, 10512115 - 10512018
Alignment:
Q  725 atccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacggtcatttagttactgat 822  Q
    |||||||||||||||||||| |||||||||| ||||| | |||| |  || | ||| | |||||||| ||||||||  ||||||||||| | ||||||    
T  10512115 atccatttgttgaaaatgagctaaaataacaccattgctaattggttcaagaacatctctttctataaaagttacacaacggtcatttaatcactgat 10512018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 665
Target Start/End: Original strand, 1691539 - 1691598
Alignment:
Q  606 cggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaacta 665  Q
    |||||| ||||||| ||||||||||| |||||||||||||| ||| |||| || ||||||    
T  1691539 cggatcgagactttaggtatatgtggagctaaaatttcaaataaataataatgaaaacta 1691598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 801
Target Start/End: Complemental strand, 39781087 - 39780992
Alignment:
Q  706 acaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaa 801  Q
    ||||||||| ||||||   |||||||||||||||||||| || |||||||||| || | ||||| |||| | ||| | |||| ||| |||||||||    
T  39781087 acaatgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaa 39780992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 3e-47; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 613 - 773
Target Start/End: Complemental strand, 16461804 - 16461644
Alignment:
Q  613 agacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatacatcacaatga 712  Q
    |||| |||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||| || |||||||    
T  16461804 agacgtttgatatatatggggctaaaatttcaaagaaacaataatgcaaactatattaaaaataagaaataacattgtttgatacaatatattacaatga 16461705  T
Q  713 aagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaa 773  Q
    || | ||||| ||| ||||||||||||||||| | |||| ||||||||||| |||||||||    
T  16461704 aaattgtctcctattcatttgttgaaaatgagcttaaatgacatcattgttaattgttaaa 16461644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 602 - 854
Target Start/End: Complemental strand, 14607926 - 14607698
Alignment:
Q  602 ggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaata 701  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||                      ||||||||||||||||    
T  14607926 ggggcggatccagacttttggtatatggggggctaaaatttcaaagaaacaataatgcaaac----------------------attgtttgatacaata 14607849  T
Q  702 catcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaa 801  Q
    ||| ||||||||| |  |||| ||||||||||||||||||||| |||||||||||||||  |||||||||||| ||||||| |||| ||| |||||||||    
T  14607848 cattacaatgaaaattttctcctatccatttgttgaaaatgagctaaaataacatcatttcttattgttaaaa-atcatatctttcaatacaagttacaa 14607750  T
Q  802 tacggtcatttagttactgatcacccatttttattatataggttactcttcac 854  Q
    |||  ||||||||| ||| |||| | | |||  ||| ||||||||||||||||    
T  14607749 tacattcatttagtcactaatcatcta-tttggttacataggttactcttcac 14607698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 634 - 793
Target Start/End: Original strand, 6689160 - 6689316
Alignment:
Q  634 ctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatacatcacaatgaaagtcgtctcatatccatttg 733  Q
    |||||||| ||||||||||||| |||||| ||||||||||| |   ||||| |  |||||||||||||||| ||||||||| ||||||| |||||||||     
T  6689160 ctaaaattacaaagaaacaataatgcaaattatattaaaaaaa---aataacaaggtttgatacaatacattacaatgaaaatcgtctcctatccattta 6689256  T
Q  734 ttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatata 793  Q
    |||||| |||| |||||| ||||||||| | |||||||||| ||||| | ||||||||||    
T  6689257 ttgaaattgagctaaaatgacatcattgctaattgttaaaagatcatctctttctatata 6689316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 609 - 714
Target Start/End: Complemental strand, 2920062 - 2919959
Alignment:
Q  609 atccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatacatcaca 708  Q
    ||||||||||||| || ||||||||||||| |||||||||||  ||| |||||||||||||||||||| ||||||| ||||||||||||||||||| |||    
T  2920062 atccagacttttgatacatgtggggctaaattttcaaagaaa--ataatgcaaactatattaaaaataagaaataacattgtttgatacaatacattaca 2919965  T
Q  709 atgaaa 714  Q
    ||||||    
T  2919964 atgaaa 2919959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 606 - 774
Target Start/End: Complemental strand, 1975435 - 1975266
Alignment:
Q  606 cggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatac-at 704  Q
    |||||| |||| || |||||||||| || |||||||| ||||||| |||| || |||||||||||||||||  |||||| |||| ||||| |||||| ||    
T  1975435 cggatctagacattcggtatatgtgtggttaaaattttaaagaaaaaataatgtaaactatattaaaaataataaataacattggttgattcaatacaat 1975336  T
Q  705 cacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaa 774  Q
     ||||||||| | ||||||| || ||||| |||||||||| |||||||| | ||||| | ||| ||||||    
T  1975335 aacaatgaaaattgtctcatgtctatttgatgaaaatgagttaaaataatagcattgctaatttttaaaa 1975266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 637 - 832
Target Start/End: Original strand, 30705248 - 30705438
Alignment:
Q  637 aaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatacatcacaatgaaagtcgtctcatatccatttgttg 736  Q
    ||||||||||||||  ||  | |||| |||| |||||||| ||||||| ||||||||||||||||||     || ||| ||||||  |||||||||||||    
T  30705248 aaatttcaaagaaattatgattcaaattatactaaaaataagaaataacattgtttgatacaataca-----ataaaaatcgtctattatccatttgttg 30705342  T
Q  737 aaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacggtcatttagttactgatcacccatttt 832  Q
    || ||||  ||||||||| ||| |||| ||||| |||| |  |||| ||||| | || ||||||| | ||||||||||  |||||||||| |||||    
T  30705343 aacatgatttaaaataacttcaatgttaattgtgaaaagaaaatatctttctgtgtatgttacaagatggtcatttagccactgatcaccgatttt 30705438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 686 - 824
Target Start/End: Original strand, 21883261 - 21883399
Alignment:
Q  686 attgtttgatacaatacatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatt 785  Q
    ||||||| ||||||| ||| ||||||||| ||||||  |||||||||||||||||||||  ||||| ||| ||||| | |||||| | | |  || | ||    
T  21883261 attgtttaatacaatgcattacaatgaaaatcgtcttctatccatttgttgaaaatgagaaaaaatgacagcattgctaattgtttatagaatatctctt 21883360  T
Q  786 tctatataagttacaatacggtcatttagttactgatca 824  Q
    |||||||||||||||| | ||||| ||||| ||||||||    
T  21883361 tctatataagttacaacagggtcaattagtcactgatca 21883399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 632 - 754
Target Start/End: Original strand, 30702648 - 30702768
Alignment:
Q  632 ggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatac-atcacaatgaaagtcgtctcatatccat 730  Q
    |||||||||||||||||||| ||   ||||| |||| |||||||| ||||||| ||||||||||||||||| || || || ||| ||||||  ||||||     
T  30702648 ggctaaaatttcaaagaaacgat---gcaaattatactaaaaataagaaataacattgtttgatacaatacaatgacgataaaaatcgtctactatccag 30702744  T
Q  731 ttgttgaaaatgaggtaaaataac 754  Q
    |||| ||||||||| |||||||||    
T  30702745 ttgtcgaaaatgagctaaaataac 30702768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 686 - 772
Target Start/End: Original strand, 33704118 - 33704205
Alignment:
Q  686 attgtttgatacaatacatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggt-aaaataacatcattgtttattgttaa 772  Q
    ||||||||||||||||||| ||||| ||| | ||||  |||| ||||||| |||||||| | ||||| ||||||||||| ||||||||    
T  33704118 attgtttgatacaatacattacaataaaaattgtcttctatctatttgttaaaaatgagctaaaaatgacatcattgttaattgttaa 33704205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 706 - 832
Target Start/End: Original strand, 18816936 - 18817062
Alignment:
Q  706 acaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacg 805  Q
    ||||||||| ||||||   |||||||||||||||||||| || |||||||||| || | ||||| |||| | ||| | |||| ||| |||||||||  ||    
T  18816936 acaatgaaaatcgtctgtcatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaagccg 18817035  T
Q  806 gtcatttagttactgatcacccatttt 832  Q
     |||||||   | ||||||||||||||    
T  18817036 atcatttaaccattgatcacccatttt 18817062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 601 - 666
Target Start/End: Original strand, 33704022 - 33704087
Alignment:
Q  601 aggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactat 666  Q
    |||| |||||||||| ||| ||||||||||||| |||||||||||| ||| |||| | ||||||||    
T  33704022 agggacggatccagaatttaggtatatgtgggggtaaaatttcaaataaataataatacaaactat 33704087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 691 - 735
Target Start/End: Original strand, 35188058 - 35188102
Alignment:
Q  691 ttgatacaatacatcacaatgaaagtcgtctcatatccatttgtt 735  Q
    |||||||||||||| ||||||||| ||||||| ||||||||||||    
T  35188058 ttgatacaatacattacaatgaaaatcgtctcttatccatttgtt 35188102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 725 - 832
Target Start/End: Original strand, 24901724 - 24901831
Alignment:
Q  725 atccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacggtcatttagttactgatca 824  Q
    |||||||||||||||||||| || |||||||||| || | ||||| |||| | ||| | |||| ||| |||||||||  || |||||||   | ||||||    
T  24901724 atccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaagccgatcatttaaccattgatca 24901823  T
Q  825 cccatttt 832  Q
    ||||||||    
T  24901824 cccatttt 24901831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 94; Significance: 2e-45; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 605 - 813
Target Start/End: Complemental strand, 461511 - 461302
Alignment:
Q  605 gcggatccagacttttggtatatgtggggctaaaat-ttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaataca 703  Q
    ||||||| |||| ||| |||||| ||||| |||||  || ||||||| |||| |||||||||||||||||||| ||| ||| |||||||| |||||||||    
T  461511 gcggatctagacatttagtatatatggggttaaaaaatttaaagaaataataatgcaaactatattaaaaataagaagtaacattgtttggtacaataca 461412  T
Q  704 tcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaata 803  Q
    | ||||||||| ||||||| |||| |||||||||||||||| |||||| ||||||||| | |||||||||| | ||||| ||| |||||||||||||| |    
T  461411 ttacaatgaaaatcgtctcctatctatttgttgaaaatgagctaaaatgacatcattgctaattgttaaaataacatatctttatatataagttacaaaa 461312  T
Q  804 cggtcattta 813  Q
    ||||| ||||    
T  461311 cggtcgttta 461302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 600 - 814
Target Start/End: Complemental strand, 1027 - 817
Alignment:
Q  600 caggggcggatccagacttttggtatatgtggggctaaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaa 699  Q
    ||||| |||||| |||  |||| |||| ||| | |||||||||||||||||||||   | |||||||| |||||||| ||||||| |||||   ||||||    
T  1027 cagggacggatctagatatttgatatacgtgtgactaaaatttcaaagaaacaatgacgaaaactatactaaaaataagaaataacattgtgcaatacaa 928  T
Q  700 tacatcacaatgaaagtcgtctcatatccatttgttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttac 799  Q
    |     ||||||||| ||||||  ||| |  |||||||||||||| |||| ||||||||||| | ||||| |||| | ||||| ||||||||||||||||    
T  927 tt----acaatgaaaatcgtctactattcgattgttgaaaatgagctaaactaacatcattgctaattgtcaaaagaacatatctttctatataagttac 832  T
Q  800 aatacggtcatttag 814  Q
    || | ||||||||||    
T  831 aagatggtcatttag 817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 635 - 811
Target Start/End: Original strand, 9625 - 9800
Alignment:
Q  635 taaaatttcaaagaaacaatattgcaaactatattaaaaatatgaaataaaattgtttgatacaatac-atcacaatgaaagtcgtctcatatccatttg 733  Q
    |||||||||||||||| |||| ||||||| ||||||||||||| |||||| | |||||||| || | | || ||||| ||| | |||| ||||  |||||    
T  9625 taaaatttcaaagaaaaaataatgcaaacaatattaaaaatataaaataacaatgtttgatgcagtgcaattacaataaaaattgtcttatattgatttg 9724  T
Q  734 ttgaaaatgaggtaaaataacatcattgtttattgttaaaacatcatatatttctatataagttacaatacggtcatt 811  Q
    ||||||  ||| |||| ||||| ||||||| |||||||||  | |||   || ||||||||||||||| || ||||||    
T  9725 ttgaaa--gagttaaagtaacaacattgttaattgttaaattaacatcccttcctatataagttacaagacagtcatt 9800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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