View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390R-Insertion-4 (Length: 920)
Name: NF1390R-Insertion-4
Description: NF1390R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390R-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 9 - 403
Target Start/End: Complemental strand, 4872118 - 4871721
Alignment:
| Q |
9 |
ggatattaagaagggaagaaaaaagagcgatataatcggatatggtagagtaaccgcgagagagcatgtcatcgaaatcacgagtagcagaattgatata |
108 |
Q |
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| T |
4872118 |
ggatattaagaagggaagaaaaaagagcgttataatcggatatggtagagtaaccgcgagagagcatgtcatcgaaatcacgagtagcagaattgatata |
4872019 |
T |
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| Q |
109 |
agctattgtttccttcacccatttatagtaacaaggaggacgaggaagaggaggcatgtctatgaatggatcacaagtataagggtgacgaggaaacaac |
208 |
Q |
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| T |
4872018 |
agctattgtttccttcacccatttatagtaacaaggaggacgaggaagaggaggcatgtctatgaatggatcacaagtataagggcgacgaggaaacaac |
4871919 |
T |
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| Q |
209 |
ttcttgttgtttttggaaatagtaataatagaagaaacagcactaacaccaccaacacatcttcttcttaacattgagagcattgttgc---ttcgtgat |
305 |
Q |
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| T |
4871918 |
ttgttggtgtttttggaaatagtaataatagaagaaacagcactaacaccaccaacacatcttcttcttaacattgagagcattgttgctaattcgtgat |
4871819 |
T |
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| Q |
306 |
agtgagaaagaagatgaaccctagttctgnnnnnnnnnnnnnnnntctgccctaacttgaaattcaacacaaagatgaacccttgttgcggtctttac |
403 |
Q |
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| T |
4871818 |
agtgagaaagaagatgaaccctagttctgaaaaacaaaaataaaatctgccctaacttgaaattcaacacaaagaggaacccttgttgcggtctttac |
4871721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 516 - 862
Target Start/End: Complemental strand, 4871608 - 4871262
Alignment:
| Q |
516 |
ttatttagtacatgttttt--gtaaaaaccgtttagatcaggctatgggtcacttttttataaccgttgtttgataataacattaatacattttgtaaaa |
613 |
Q |
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| T |
4871608 |
ttatttaatacatgtttttttgtaaaaaccgtttggatcaggctatgggtcacttttttataaccgttgtttgataataacattaatacattttgtaaaa |
4871509 |
T |
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| Q |
614 |
atcaaatattatatgatcaaaaactttattaannnnnnnaatataatgtatttgagg-cccaatgtaaatttgcgagaacctaaattggagtttcattct |
712 |
Q |
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| T |
4871508 |
atcaaatattatatgatcaaaaaatttattaatttttttagtataatgtatttgagggcccaatgtaa-tttgcgggaacctaaattggagttttattct |
4871410 |
T |
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| Q |
713 |
atttatttgatgcatttccactatgtggaagcatatcaaataagtgctcgtagaccatactaaattttcctctgaa-tgttgttgtagggaagtggaaag |
811 |
Q |
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| T |
4871409 |
atttatttgatgcatttccactatgtggaagcatatcaaataagtgctcgtagaccatactaaactttcctctgaattgttgttgtagggaagtgg-aag |
4871311 |
T |
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| Q |
812 |
ataaggcctctaagtaattagatgaatgataagaggtttgcc-attgagttt |
862 |
Q |
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| T |
4871310 |
ataaggcctctaagta---agatgaatgataagaggtttgccaattgagttt |
4871262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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