View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390R-Insertion-5 (Length: 710)

Name: NF1390R-Insertion-5
Description: NF1390R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390R-Insertion-5
NF1390R-Insertion-5
[»] chr3 (1 HSPs)
chr3 (94-710)||(47506286-47506892)


Alignment Details
Target: chr3 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 94 - 710
Target Start/End: Original strand, 47506286 - 47506892
Alignment:
Q  94 gtaccaccttctaggttttatagacttggataattttaggcagttgttgatcatttaaattttttgtagcacactttctggacaaggtactccttaattg 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47506286 gtaccaccttctaggttttatagacttggataattttaggcagttgttgatcatttaaattttttgtagcacactttctggacaaggtactccttaattg 47506385  T
Q  194 caactgttttattggcccaaaggaaaattgatgacaatgttttactaaattagaaaattgaaaaagaaaggatttacagcatctaaatatgtatataggt 293  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47506386 caactgttttattggcccaaaggcaaattgatgacaatgttttactaaattagaaaattgaaaaagaaaggatttacagcatctaaatatgtatataggt 47506485  T
Q  294 agagttgaattgtggaaagagctgtcatgcannnnnnnntaaaatgaaatgtgaccccaaaaaactcaatgaaggaaggggataagtgaacatgattgtt 393  Q
    |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47506486 agagttgaattgtggaaagagctgtcatgcaggggggggtaaaatgaaatgtgaccccaaaaaactcaatgaaggaaggggataagtgaacatgattgtt 47506585  T
Q  394 ttgtggtgggtgtgcattatacatacttataaaaaatttctttctgacacacttataataacgagtttatataccccacaaccactaactcccataccac 493  Q
    ||||||||||| ||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47506586 ttgtggtgggtatgcattatac----ttataaaaaatttctttctgacacacttataataacgagtttatataccccacaaccactaactcccataccac 47506681  T
Q  494 ttatttcaacaaattaaaagtgtgtctgtttcaattcaatcatcgatcttatggtataataagagagtttgatattcacaaatcccaatgctttgactgt 593  Q
    ||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  47506682 ttatttcaacaaattaaaagtgtgtctgtttcaattcaatcatc----ttatggtataataagag--tttgatattcacaaatcccaatgctttgactgt 47506775  T
Q  594 ccctttctcttctcttgctgctattcattcaaatttgtcactcccgaaacccacggggcagtgtgctcacatggatgaagtgagtatccaccattattaa 693  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47506776 ccctttctcttctcttgctgctattcattcaaatttgtcactcccgaaacccacggggcagtgtgctcacatggatgaagtgagtatccaccattattaa 47506875  T
Q  694 cataaccttgctggtgt 710  Q
    |||||||||||||||||    
T  47506876 cataaccttgctggtgt 47506892  T

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