View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390R-Insertion-7 (Length: 540)
Name: NF1390R-Insertion-7
Description: NF1390R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390R-Insertion-7 |
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| [»] chr8 (6 HSPs) |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 443; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 8 - 540
Target Start/End: Complemental strand, 33951053 - 33950536
Alignment:
| Q |
8 |
accacccctcagaagctccattttcaacttgctaaatgctatatccaacccaacagtgaattttggattttcaggaacatcgaaaggacgcttaaaaagt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||| |
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| T |
33951053 |
accacccctcagaagctccattttcaacttgctaaatggtatatccaacccaacagtgaatttttgattttcaggaacattgaaaggacgcttgaaaagt |
33950954 |
T |
|
| Q |
108 |
tgtccatcttcattgaatttgtgtacaaaattttcatggatgagaagctcaagaatttctctggccttataaagcgtctcttcaacatcatttacagtaa |
207 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33950953 |
tgtccatcttcattgaatt---------------catggttgagaagctcaagaatttctctggtcttataaagcgtctcttcaacatcatttacagtaa |
33950869 |
T |
|
| Q |
208 |
gagattggttctcctcaacaacatagccataggtatcattctcagaagaacatttgcatgcactttctcctgcatcattttcttctatcagactatttat |
307 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33950868 |
gagattggttctcctcaacaacatagccataggaatcattctcagaagaacatgtacatgcactttctcctgcatcattttcttctatcagactatttat |
33950769 |
T |
|
| Q |
308 |
ttcttctctggggtgatccaaatgatcattgtattgctttatatcttgtacaacgggagataaatcctttaagattaacctcaatgatcgccttgaactt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33950768 |
ttcttctctggggtgatccaaatgatcattgtattgctttatatcttgtacaacgggagataaatcctttaagattaacctcaatgatcgccttgaactt |
33950669 |
T |
|
| Q |
408 |
tggttcttttgtgctttttgaagaatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgtgtagcgctactca |
507 |
Q |
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| T |
33950668 |
tggttcttttgtgctttttgaagaatttgagatattttgttcaagacatcattaaattgaaatcttgttgtaagggtaataatgtgtgtagcgctactca |
33950569 |
T |
|
| Q |
508 |
tgaatttgagattccttcttctgtttttgcctg |
540 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
33950568 |
tgaatttgagattccttcttctgtttttgcctg |
33950536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 540
Target Start/End: Complemental strand, 33990526 - 33990015
Alignment:
| Q |
20 |
aagctccattttcaacttgctaaatgctatatccaacccaacagtgaattttggattttcaggaacatcgaaaggacgcttaaaaagttgtccatcttca |
119 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || || | ||||| |
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| T |
33990526 |
aagctccattttcaacttgctaaatggtatatccaacccaacagtgaattttggattttcaggaacatcgaaaggacgcttgaaaggtggtttagcttca |
33990427 |
T |
|
| Q |
120 |
ttgaatttgtgtacaaaattttcatggatgagaagctcaagaatttctctggccttataaagcgtctcttcaacatcatttacagtaagagattggttct |
219 |
Q |
| |
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|||||||||||| ||||| |||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
33990426 |
ttgaatttgtgttcaaaagtttcatagttgagaagctcaagaatttctctggccttataaagtgtctcttcaacatcatttacaataagagattggttct |
33990327 |
T |
|
| Q |
220 |
cctcaacaacatagccataggtatcattctcagaagaacatttgcatgcactttctcctgcatcattttcttctatcagactatttatttcttctctggg |
319 |
Q |
| |
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| |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| | || |||||||||||||| |
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| T |
33990326 |
catcaacaac------ataggaatcattctcagaagaacatttgcatgcactttcttctgcatcattttcttctaatagagtcttgatttcttctctggg |
33990233 |
T |
|
| Q |
320 |
gtgatccaaatgatcattgtattgctttatatcttgtacaacgggagataaatcctttaagattaacctcaatgatcgccttgaactttggttcttttgt |
419 |
Q |
| |
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||||||||||| ||||||||||||||||| ||||| || || ||| ||||||||| |||||| ||||||| || |||||| |||||||| |||| || |
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| T |
33990232 |
atgatccaaatgttcattgtattgctttatgtcttgaaccacaagagttaaatccttcaagattgacctcaacaattgccttgcactttggtgctttcgt |
33990133 |
T |
|
| Q |
420 |
gctttttgaagaatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgtgta---gcgctactcatgaatttga |
516 |
Q |
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||| ||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
33990132 |
gctgtttcaactatttgagatattttgttcaagacatca------tgaaatcttgttgtaagggtaataatatgtgtagtggcgctactcatgaatttga |
33990039 |
T |
|
| Q |
517 |
gattccttcttctgtttttgcctg |
540 |
Q |
| |
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||||||||| |||| ||||||||| |
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| T |
33990038 |
gattccttcctctgcttttgcctg |
33990015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 137 - 377
Target Start/End: Complemental strand, 33959580 - 33959346
Alignment:
| Q |
137 |
attttcatggatgagaagctcaagaatttctctggccttataaagcgtctcttcaacatcatttacagtaagagattggttctcctcaacaacatagcca |
236 |
Q |
| |
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|||||| ||| |||||||||||||||||||||| | ||||||||| || |||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
33959580 |
attttcgtggttgagaagctcaagaatttctcttggcttataaagtgtttcttcaacatcatttacaataagagattggttctcatcaacaacatag--- |
33959484 |
T |
|
| Q |
237 |
taggtatcattctcagaagaacatttgcatgcactttctcctgcatcattttcttctatcagactatttatttcttctctggggtgatccaaatgatcat |
336 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
33959483 |
---gaatcattctcagaagaacatttgcatgcactttctcctgcatcattttcttctattagactatttatttcctctctggggtgatccaaatgatcat |
33959387 |
T |
|
| Q |
337 |
tgtattgctttatatcttgtacaacgggagataaatccttt |
377 |
Q |
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||||||||||||| ||||| || || ||||||||||||||| |
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| T |
33959386 |
tgtattgctttatgtcttgaaccacaggagataaatccttt |
33959346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 137 - 516
Target Start/End: Complemental strand, 33973582 - 33973227
Alignment:
| Q |
137 |
attttcatggatgagaagctcaagaatttctctggccttataaagcgtctcttcaacatcatttacagtaagagattggttctcctcaacaacatagcca |
236 |
Q |
| |
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|||||| ||| |||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||||||||||||||| |||||||| ||| |
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| T |
33973582 |
attttcgtggttgagaagctcaagaatttctctggccttgtaaagtgtctcttcgacatcatttacaataagagattggttctcatcaacaacgtag--- |
33973486 |
T |
|
| Q |
237 |
taggtatcattctcagaagaacatttgcatgcactttctcctgcatcattttcttctatcagactatttatttcttctctggggtgatccaaatgatcat |
336 |
Q |
| |
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| |||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| || |||| |
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| T |
33973485 |
---gaatcattctcaaaagaagatttgcatgcactttct---------------tctatcaaactatttatttcttctctgggttgatccaagtgttcat |
33973404 |
T |
|
| Q |
337 |
tgtattgctttatatcttgtacaacgggagataaatcctttaagattaacctcaatgatcgccttgaactttggttcttttgtgctttttgaagaatttg |
436 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||| ||||| ||| || |||| |
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| T |
33973403 |
tgtaatgctttatatcttgtacaacgggagataaatcctttaagattaacctaaacaatagccttgaactttggttctttcgtgctgtttcaactatttc |
33973304 |
T |
|
| Q |
437 |
agatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgt---gtagcgctactcatgaatttga |
516 |
Q |
| |
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|||||||||||||||||||||| | |||||||||||||||||||||||| ||| || ||||||||||||||||||| |
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|
| T |
33973303 |
agatattttgttcaagacatca------ttaaatcttgttgtaagggtaataatatgtgtcgtggcgctactcatgaatttga |
33973227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 413 - 515
Target Start/End: Complemental strand, 33959349 - 33959247
Alignment:
| Q |
413 |
cttttgtgctttttgaagaatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgtgtagcgctactcatgaat |
512 |
Q |
| |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33959349 |
ctttcgtgctttttgaagtatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgtgtagcgctactcatgaat |
33959250 |
T |
|
| Q |
513 |
ttg |
515 |
Q |
| |
|
||| |
|
|
| T |
33959249 |
ttg |
33959247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 33973648 - 33973577
Alignment:
| Q |
8 |
accacccctcagaagctccattttcaacttgctaaatgctatatccaacccaacagtgaattttggattttc |
79 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33973648 |
accacccctcagaagctccattttcaacttgctaaatggtatatccaacccaacagtgaattttggattttc |
33973577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 10556 - 10341
Alignment:
| Q |
21 |
agctccattttcaacttgctaaatgctatatccaacccaacagtgaattttggattttcaggaacatcgaaaggacgcttaaaaa---gttgtccatctt |
117 |
Q |
| |
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||||||||||||||||||||||||| |||||| | ||||||| |||||| ||||||||| |||||| | ||||||| ||| || | || |||||| || |
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| T |
10556 |
agctccattttcaacttgctaaatggtatatcaatcccaacaatgaattctggattttctggaacaccaaaaggacccttgaatattggtggtccatttt |
10457 |
T |
|
| Q |
118 |
cattgaatttgtgtacaaaattttcatggatgagaagctcaagaatttctctggccttataaagcgtctcttcaacatcatttacagtaagagattggtt |
217 |
Q |
| |
|
|||| ||||| ||| |||||||||| | | | ||||| |||||||||||||||||||| ||||| ||||||| |||||||||||| |||||||||||||| |
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|
| T |
10456 |
cattaaatttctgttcaaaattttccttgttaagaagttcaagaatttctctggccttgtaaagtgtctctttaacatcatttaccgtaagagattggtt |
10357 |
T |
|
| Q |
218 |
ctcctcaacaacatag |
233 |
Q |
| |
|
|| ||||| |||||| |
|
|
| T |
10356 |
atcatcaacgacatag |
10341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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