View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390R-Insertion-8 (Length: 493)
Name: NF1390R-Insertion-8
Description: NF1390R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390R-Insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 8 - 488
Target Start/End: Original strand, 42442837 - 42443321
Alignment:
| Q |
8 |
actaaggagcaaggaacatgtatgagg---aggtgaagaaagatatcatggttaaaaacagagagaaagaggaggaagtcaaattaatttggagccaaca |
104 |
Q |
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| T |
42442837 |
actaaggagcaaggaacatgtatgaggaggaggtgaagaaagatatcatggttaaaaacagagagaaagaggaggaagtcaaattaatttggagccaaca |
42442936 |
T |
|
| Q |
105 |
cttttgcttttaagatttatgctaatcaaagataaagattattccaaaacatagagaactatacttctaattgaacattagtgcccaaaacatattttga |
204 |
Q |
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| T |
42442937 |
cttttgtttttaagatttatgctaattaaagataaagattattccaaaacatagagaactatacttctaattgaacattagtgcccaaaacatattttga |
42443036 |
T |
|
| Q |
205 |
gactagtgccctacacttttgaacactagcgcccactactaattctacttgagcttgttaaagggttgtgcttaactatgaatttatacccctcttttag |
304 |
Q |
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| T |
42443037 |
cgctagtgccctacacttttgaacactagtgcccactactaattctacttgagcttgttaaagggttgtgcttaactatgaatttatacccctcttttag |
42443136 |
T |
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| Q |
305 |
tttgagtgatatttctcaagtagtgcattgtagaacttgttttgagactattccaaaacgatttttatttgcttgataaggagatatatggttgaagcat |
404 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42443137 |
tttgagtgatatttttcaagtagtgcattctagaacttgttttgagactattccaaaacgatttttattggcttgataaggagatatatggttgaagcat |
42443236 |
T |
|
| Q |
405 |
tctaggcatttttctggccccattcccactagtgcctccttttgagccta-nnnnnnnnctttgatgtaaactttttcttgttaa |
488 |
Q |
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| T |
42443237 |
tctaggcatttttctggccccattcccactagtgcctccttttgagcctatttttttttctttgatgtaaactttttcttgttaa |
42443321 |
T |
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