View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1390R-Insertion-9 (Length: 490)
Name: NF1390R-Insertion-9
Description: NF1390R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390R-Insertion-9 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 458; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 9 - 490
Target Start/End: Original strand, 25605346 - 25605827
Alignment:
| Q |
9 |
ccatttttaatgcctacagctctgttgggtattcacttcttctcaagaaagaaaaggcaatcattgtgcagcccgatcgggttgtggttgctaatggacc |
108 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25605346 |
ccatttttaatgactacagctctgttgggtattcacttcttctcaagaaagagaaggcaatcattgtgcagcccgatcgggttgtggttgctaatggacc |
25605445 |
T |
|
| Q |
109 |
tgcatttggatgcattttgatgaaggatttcctaaaggcacttgcaaagcgtctcaaacacaacaatgctgcatatgaaaattaccataggatatttgtc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25605446 |
tgcatttggatgcattttgatgaaggatttcctaaaggcacttgcaaagcgtctcaaacacaacaatgctgcatatgaaaattaccataggatatttgtc |
25605545 |
T |
|
| Q |
209 |
ccagatgggaaacctttgaagtcagcaccaaaagaacctttgagagttaatgttatgttccaacatatacaacagatgttatcgagggaaactgctgtga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25605546 |
ccagatgggaaacctttgaagtcagcaccaaaagaacctttgagagttaatgttatgttccaacatatacaacagatgttgtcgagggaaactgctgtga |
25605645 |
T |
|
| Q |
309 |
ttgctgagacaggggactcatggtttaactgtcaaaaattgaaattgcccgagggatgtgggtaagtgttgagataatgtgatttgttgtattttcaaaa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
25605646 |
ttgctgagacaggggactcatggtttaactgtcaaaaattgaaattgcccgagggatgtgggtaagtgttgagataatgtgatttgttgtattttcaaca |
25605745 |
T |
|
| Q |
409 |
ataaatttcatgttgtttatagtgctgataaaatcttgttggtaggtatgagtttcaaatgcaatatggttcaattggatgg |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25605746 |
ataaatttcatgttgtttatagtgctgataaaaccttgttggcaggtatgagtttcaaatgcaatatggttcaattggatgg |
25605827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 9 - 490
Target Start/End: Original strand, 25624978 - 25625468
Alignment:
| Q |
9 |
ccatttttaatgcctacagctctgttgggtattcacttcttctcaagaaagaaaaggcaatcattgtgcagcccgatcgggttgtggttgctaatggacc |
108 |
Q |
| |
|
|||||||||| | |||||| |||||||||||||||||||||||||||||||| || || || ||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
25624978 |
ccatttttaacgactacagttctgttgggtattcacttcttctcaagaaagagaaagcgattattgttgagcccgatcgggttgtgattcctaatggacc |
25625077 |
T |
|
| Q |
109 |
tgcatttggatgcattttgatgaaggatttcctaaaggcacttgcaaagcgtctcaaacacaacaatgctgcatatgaaaattaccataggatatttgtc |
208 |
Q |
| |
|
|||||||||||| | |||||||| |||||||| ||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25625078 |
tgcatttggatgtgtgttgatgaatgatttccttaaggcacttgcgaagcatctcaaacacaacaatgttgcatatgaaaattaccataggatatttgtc |
25625177 |
T |
|
| Q |
209 |
ccagatgggaaacctttgaagtcagcaccaaaagaacctttgagagttaatgttatgttccaacatatacaacagatgttatcgagggaaactgctgtga |
308 |
Q |
| |
|
||| | || ||||||||||| || | ||||||||||| |||||||| |||||||||||||||||||||||||| ||||| || || ||||| | ||||| |
|
|
| T |
25625178 |
ccaaacggaaaacctttgaaatctgagccaaaagaaccattgagagtcaatgttatgttccaacatatacaacaaatgttgtctagtgaaacagttgtga |
25625277 |
T |
|
| Q |
309 |
ttgctgagacaggggactcatggtttaactgtcaaaaattgaaattgcccgagggatgtgggtaagtgttgagataatgtgatttgttgtattttcaaa- |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||| || ||| ||||||||||||||||| || |
|
|
| T |
25625278 |
ttgctgagacaggggactcatggtttaactgccaaaagttgaaattaccggagggatgtgggtaagtgttatgagaatatgatttgttgtattttccaat |
25625377 |
T |
|
| Q |
408 |
--------aataaatttcatgttgtttatagtgctgataaaatcttgttggtaggtatgagtttcaaatgcaatatggttcaattggatgg |
490 |
Q |
| |
|
| ||| || || ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25625378 |
ttttcctcttttttttttattttttttattgtgctgataaaatcttgttgataggtatgagtttcaaatgcaatatggttcaattggatgg |
25625468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 419 - 490
Target Start/End: Original strand, 25450966 - 25451037
Alignment:
| Q |
419 |
tgttgtttatagtgctgataaaatcttgttggtaggtatgagtttcaaatgcaatatggttcaattggatgg |
490 |
Q |
| |
|
|||||||| || || |||| | ||||||||| |||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
25450966 |
tgttgtttgtaatgttgattacatcttgttgatagggatgactttcaaatgcaatatggttcaattggatgg |
25451037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 285
Target Start/End: Original strand, 25450834 - 25450872
Alignment:
| Q |
247 |
tttgagagttaatgttatgttccaacatatacaacagat |
285 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
25450834 |
tttgagggttaatgttatgttccaacatatacaaaagat |
25450872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 375
Target Start/End: Original strand, 20435439 - 20435791
Alignment:
| Q |
23 |
tacagctctgttgggtattcacttcttctcaagaaagaaaaggcaatcattgtgcagcccgatcgggttgtggttgctaatggacctgcatttggatgca |
122 |
Q |
| |
|
||||| |||||||| || ||||||||| | ||||||||||| || || ||||| ||||| ||| |||||||| ||| ||||| ||| ||||||| || |
|
|
| T |
20435439 |
tacagttctgttggatactcacttcttttgaagaaagaaaaagctattattgttcagcctgatagggttgtgattggaaatggtcctacatttgggtgtg |
20435538 |
T |
|
| Q |
123 |
ttttgatgaaggatttcctaaaggcacttgcaaagcgtctcaaacacaacaatgctgcatatgaaaattaccataggatatttgtcccagatgggaaacc |
222 |
Q |
| |
|
| |||||||||||||| || | || || || |||||||| || |||||| |||| ||||| ||||| ||||| ||||| || || || || |
|
|
| T |
20435539 |
tcttgatgaaggattttcttagcgcgctcgcgaagcgtcttaagaggaacaatactgcttatgagaattatttcaggatttttgttcctgaaggtttgcc |
20435638 |
T |
|
| Q |
223 |
tttgaagtcagcaccaaaagaacctttgagagttaatgttatgttccaacatatacaacagatgttatcgagggaaactgctgtgattgctgagacaggg |
322 |
Q |
| |
|
|||| || | ||| | ||| |||||||| ||||||||| | || |||||||| || | ||||| ||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
20435639 |
ggtgaaatctgaacctagagagcctttgagggttaatgttctttttcaacatattcagaatatgttgtcgagtgaaactgctgttattgccgagacaggg |
20435738 |
T |
|
| Q |
323 |
gactcatggtttaactgtcaaaaattgaaattgcccgagggatgtgggtaagt |
375 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||| | ||||| |||||||| |
|
|
| T |
20435739 |
gactcatggtttaactgccaaaagctgaaattgccaaaaggatgcgggtaagt |
20435791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 490
Target Start/End: Original strand, 20436012 - 20436047
Alignment:
| Q |
455 |
tatgagtttcaaatgcaatatggttcaattggatgg |
490 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20436012 |
tatgagttccaaatgcaatatggttcaattggatgg |
20436047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 245 - 375
Target Start/End: Original strand, 5331758 - 5331888
Alignment:
| Q |
245 |
cctttgagagttaatgttatgttccaacatatacaacagatgttatcgagggaaactgctgtgattgctgagacaggggactcatggtttaactgtcaaa |
344 |
Q |
| |
|
|||||||| ||||||||| | || |||||||| || | ||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
5331758 |
cctttgagggttaatgttctttttcaacatattcagaatatgttgtcgagtgaaactgctgttattgccgagacaggggactcatggtttaactgccaaa |
5331857 |
T |
|
| Q |
345 |
aattgaaattgcccgagggatgtgggtaagt |
375 |
Q |
| |
|
| |||||||||| | ||||| |||||||| |
|
|
| T |
5331858 |
agctgaaattgccaaaaggatgcgggtaagt |
5331888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 5331524 - 5331651
Alignment:
| Q |
11 |
atttttaatgcctacagctctgttgggtattcacttcttctcaagaaagaaaaggcaatcattgtgcagcccgatcgggttgtggttgctaatggacctg |
110 |
Q |
| |
|
||||| |||| |||||| |||||||| || || |||||| | ||||||||||| || || ||||| ||||| ||| |||||||| ||| ||||| || |
|
|
| T |
5331524 |
attttcaatgactacagttctgttggttactcgcttcttttgaagaaagaaaaagctataattgttcagcctgatagggttgtgattggaaatggtccaa |
5331623 |
T |
|
| Q |
111 |
catttggatgcattttgatgaaggattt |
138 |
Q |
| |
|
||||||| || | |||||||||||||| |
|
|
| T |
5331624 |
catttgggtgtgtcttgatgaaggattt |
5331651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 490
Target Start/End: Original strand, 5332154 - 5332189
Alignment:
| Q |
455 |
tatgagtttcaaatgcaatatggttcaattggatgg |
490 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5332154 |
tatgagttccaaatgcaatatggttcaattggatgg |
5332189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University