View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_106 (Length: 328)
Name: NF1390_low_106
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_106 |
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| [»] scaffold0331 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 37 - 274
Target Start/End: Complemental strand, 7926435 - 7926198
Alignment:
| Q |
37 |
tccttatcctctaactgaaaatgtatttatgaggataatagtaccttcatgtttcttatcagttgcactatcaagttcttgcttttgtgttaattcaagt |
136 |
Q |
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| T |
7926435 |
tccttatcctctaactgaaaatgtatttatgaggataatagtaccttcatgtttcttatcagttgcactatcaagttcttgcttttgtgttaattcaagt |
7926336 |
T |
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| Q |
137 |
gtgaacaaagagtctaattcttgacttgaagaggaagcatgaagaggttgcgttgtttcctcatgactaggtaaggtccaatgatcttgatgaagccatt |
236 |
Q |
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| T |
7926335 |
gtgaacaaagagtctaattcttgacttgaagaggaagcatgaagaggttgcgttgtttcatcatgactaggtaaggtccaatgatcttgatgaagccatt |
7926236 |
T |
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| Q |
237 |
cattaccatgatcatgatgttcaacaatattattcgag |
274 |
Q |
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| T |
7926235 |
cattaccatgatcatgatgttcaacaatcttattcgag |
7926198 |
T |
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Target: scaffold0331 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0331
Description:
Target: scaffold0331; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 1684 - 1640
Alignment:
| Q |
272 |
gagaagacgaagatgataaagaagtagaagaatagcagcaacagc |
316 |
Q |
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| T |
1684 |
gagaagacgaagatgttaaagaagtagaagaatagcagcaacagc |
1640 |
T |
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