View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_135 (Length: 274)
Name: NF1390_low_135
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_135 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 30 - 274
Target Start/End: Complemental strand, 5528526 - 5528282
Alignment:
| Q |
30 |
aaatattatttttcaaataaaactccaaatctaaaaccaagttataggtcgtcaatttatcacaagcatgaataacaaagaataaatcactaaaattgat |
129 |
Q |
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| T |
5528526 |
aaatattatttttcaaataaaactccaaatctaaaaccaagttataggtcgtcaatttatcacaagcatgacgaacaaagaataaatcactaaaattgat |
5528427 |
T |
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| Q |
130 |
gtaaataagatatgcaggagagttgattgattatatccaatcccaacaagggagtaaatcactactatagccttatttattaaatttcactccacttaac |
229 |
Q |
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| T |
5528426 |
gtaaataagatatgcatgagagttgattgattatatccacccccaacaagggagtaaatcactactatagtcttatttattaaatttcactccacttatc |
5528327 |
T |
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| Q |
230 |
tactttactaacttaataaactgttttagtaaatgatatttcatt |
274 |
Q |
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| T |
5528326 |
tactttactaacttaataaactgttttagtaaatgatatttcatt |
5528282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 16028314 - 16028351
Alignment:
| Q |
202 |
ttatttattaaatttcactccacttaactactttacta |
239 |
Q |
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| T |
16028314 |
ttatttattgaatttcactccacttaactactttacta |
16028351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 242
Target Start/End: Complemental strand, 29445047 - 29445004
Alignment:
| Q |
199 |
gccttatttattaaatttcactccacttaactactttactaact |
242 |
Q |
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| T |
29445047 |
gccttatttataaaatttcattccacttaactacttaactaact |
29445004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 31894339 - 31894285
Alignment:
| Q |
188 |
tcactactatagccttatttattaaatttcactccacttaactactttactaact |
242 |
Q |
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|||||| |||| ||||||||||||||||||| | |||||||||||| ||||||| |
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| T |
31894339 |
tcactattatacccttatttattaaatttcatccaacttaactacttcactaact |
31894285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 30546485 - 30546447
Alignment:
| Q |
195 |
tatagccttatttattaaatttcactccacttaactact |
233 |
Q |
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|||| ||||||||||| |||||||||||||||||||||| |
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| T |
30546485 |
tatacccttatttattgaatttcactccacttaactact |
30546447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 30260996 - 30261041
Alignment:
| Q |
195 |
tatagccttatttattaaatttcactccacttaactactttactaa |
240 |
Q |
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| T |
30260996 |
tatagtcttatttattgaatttcactctacttaactactctactaa |
30261041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 40109710 - 40109754
Alignment:
| Q |
201 |
cttatttattaaatttcactccacttaactactttactaacttaa |
245 |
Q |
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| T |
40109710 |
cttatttattgaatttcactctatttaactactctactaacttaa |
40109754 |
T |
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