View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13910_low_3 (Length: 350)
Name: NF13910_low_3
Description: NF13910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13910_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 10 - 334
Target Start/End: Original strand, 27113121 - 27113443
Alignment:
| Q |
10 |
aatatcaaagaaccgtgacgagactacatgtaatttagacgaagctaactacattatacaataaacaagactttatannnnnnnncttatacgtacagag |
109 |
Q |
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| T |
27113121 |
aatatcaaagaac-gtgacgagattatatgtaatttagacgaagttagctacattatacaataaacaagact--atattttttttcttatacgtacagag |
27113217 |
T |
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| Q |
110 |
aaatcgtcacattcatgaatatgaatgtatgttatttcagagaaactttgtccataaagcaatcccctactagcatcatcaaaaattgcatctgatgtag |
209 |
Q |
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| T |
27113218 |
aaatcgtcacattcatgaatatgaatgtatgttatttcagagaagctttgtccataaagcaatcctctcctagcaccatcaaaaattgcatctgatgtag |
27113317 |
T |
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| Q |
210 |
gagaatcgcaaaacccgaactcgtcgattccaacatccattgcttcaattttgtctgcaaattcattcatcttaaacgtatgaatcaata-ttttcatta |
308 |
Q |
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| T |
27113318 |
gagaatcgcaaaacccgaactcgtcgattccaacatctattgcttcaattttgtctgcaaattcattcatcttaaacgtatgaatcaatatttttcatta |
27113417 |
T |
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| Q |
309 |
gcatactgtttagaatcaaatatatg |
334 |
Q |
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| T |
27113418 |
gcatactgtatagaatcaaatatatg |
27113443 |
T |
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