View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13910_low_4 (Length: 305)

Name: NF13910_low_4
Description: NF13910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13910_low_4
NF13910_low_4
[»] chr1 (2 HSPs)
chr1 (113-255)||(51166539-51166681)
chr1 (1-121)||(51166961-51167081)
[»] chr7 (1 HSPs)
chr7 (1-93)||(47933144-47933233)
[»] chr3 (2 HSPs)
chr3 (1-93)||(5884591-5884680)
chr3 (1-93)||(54945946-54946035)
[»] chr2 (1 HSPs)
chr2 (15-106)||(40071662-40071751)
[»] scaffold0182 (1 HSPs)
scaffold0182 (17-93)||(10337-10410)
[»] chr6 (1 HSPs)
chr6 (1-93)||(16857034-16857123)
[»] chr4 (1 HSPs)
chr4 (17-93)||(43943273-43943346)


Alignment Details
Target: chr1 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 113 - 255
Target Start/End: Complemental strand, 51166681 - 51166539
Alignment:
Q  113 tataatttttcatgaatttatatcaggtatgtaaatatctatagctaaaaaatatgtatcaccaaacttgagtcattcttgagcaaataaagttccacat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  51166681 tataatttttcatgaatttatatcaggtatgtaaatatctatagctaaaaaatatgtatcactaaacttgagtcattcttgagcaaataaagttccacat 51166582  T
Q  213 ccttcttaatatatctatctatctactatatctaaacttgatt 255  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  51166581 ccttcttaatatatctatctatctactatatctaaacttgatt 51166539  T

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Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 51167081 - 51166961
Alignment:
Q  1 ttctattttttacgcttcatctcttggctacattcattggtttctatgacatgatagagattgaagctactttaagattgaccaaatagtttaaccctac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  51167081 ttctattttttacgcttcatctcttggctacattcattggtttctatgacatgatagagattgaagctactttaaaattgaccaaatagtttaaccctac 51166982  T
Q  101 ttttttcatagatataatttt 121  Q
    |||||||||||||||||||||    
T  51166981 ttttttcatagatataatttt 51166961  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 47933233 - 47933144
Alignment:
Q  1 ttctattttttacgcttcatctcttggctacattcattggtttctatgacatgatagagattgaagctactttaagattgaccaaatagttta 93  Q
    |||||||||||||   ||||||||||||||  ||||||||||| |||||| | ||||||| | ||| |||||| || ||||||||||||||||    
T  47933233 ttctattttttacttatcatctcttggcta--ttcattggttt-tatgacttaatagagactcaagttacttttaggttgaccaaatagttta 47933144  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 5884680 - 5884591
Alignment:
Q  1 ttctattttttacgcttcatctcttggctacattcattggtttctatgacatgatagagattgaagctactttaagattgaccaaatagttta 93  Q
    |||||||||||||   ||||||||||||||  ||||||||||| |||||| | ||||||| | ||| |||||| || ||||||||||||||||    
T  5884680 ttctattttttacttatcatctcttggcta--ttcattggttt-tatgacttaatagagactcaagttacttttaggttgaccaaatagttta 5884591  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 54946035 - 54945946
Alignment:
Q  1 ttctattttttacgcttcatctcttggctacattcattggtttctatgacatgatagagattgaagctactttaagattgaccaaatagttta 93  Q
    |||||||||||||   ||||||||||||||  ||||||||||| |||||| | ||||||| | ||| |||||| || ||||||||||||||||    
T  54946035 ttctattttttacttatcatctcttggcta--ttcattggttt-tatgacttaatagagactcaagttacttttaggttgaccaaatagttta 54945946  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 40071751 - 40071662
Alignment:
Q  15 cttcatctcttggctacattcattggtttctatgacatgatagagattgaagctactttaagattgaccaaatagtttaaccctactttttt 106  Q
    ||||||||||||||||  || |||||||| |||||||||||| | ||| ||| |||||| ||  || | |||||||||| ||||||||||||    
T  40071751 cttcatctcttggcta--tttattggtttttatgacatgataaatattcaagttacttttaggatggcaaaatagtttagccctactttttt 40071662  T

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Target: scaffold0182 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 10410 - 10337
Alignment:
Q  17 tcatctcttggctacattcattggtttctatgacatgatagagattgaagctactttaagattgaccaaatagttta 93  Q
    ||||||||||||||  ||||||||||| |||||| | ||||||| | ||| |||||| || ||||||||||||||||    
T  10410 tcatctcttggcta--ttcattggttt-tatgacttaatagagactcaagttacttttaggttgaccaaatagttta 10337  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 16857034 - 16857123
Alignment:
Q  1 ttctattttttacgcttcatctcttggctacattcattggtttctatgacatgatagagattgaagctactttaagattgaccaaatagttta 93  Q
    |||||||||||||   |||||| |||||||  ||||||||||| |||||| | ||||||| | ||| |||||| || ||||||||||||||||    
T  16857034 ttctattttttacttatcatctattggcta--ttcattggttt-tatgacttaatagagactcaagttacttttaggttgaccaaatagttta 16857123  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 43943273 - 43943346
Alignment:
Q  17 tcatctcttggctacattcattggtttctatgacatgatagagattgaagctactttaagattgaccaaatagttta 93  Q
    ||||||||||||||  ||||||||||| |||||| | ||||||| | ||| |||||| || ||||||||||||||||    
T  43943273 tcatctcttggcta--ttcattggttt-tatgacttaatagagactcaagttacttttaggttgaccaaatagttta 43943346  T

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