View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13910_low_6 (Length: 237)
Name: NF13910_low_6
Description: NF13910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13910_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 51167059 - 51167239
Alignment:
| Q |
13 |
gagaagaagcgtaaaaaatagaagaagaaaaaactattaatacaa-------gaggtatcatttaatagttgtttggagaaagtgacga-gaacaaccat |
104 |
Q |
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| T |
51167059 |
gagatgaagcgtaaaaaatagaagaagaaaaaactattaatacaaaattgaagaggtatcatttaatagttgtttggagaaagtgacgatgaacaaccat |
51167158 |
T |
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| Q |
105 |
ttttcataaacttcttgagcaacaatgatgaaacaaaaatgaaaatagaagcctcctttatactcttttcctaattcacat |
185 |
Q |
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| T |
51167159 |
ttttcataaacttcttgagcaacaatgatgaaacaaaaatgaaaatagaagcctcctttatcctcttttcctaattcacat |
51167239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 32743288 - 32743394
Alignment:
| Q |
116 |
ttcttgagcaacaatgatgaaacaaaaatgaaaatagaagcctcctttatactcttttcctaattcacat-nnnnnnnnttacatatacacattaaggaa |
214 |
Q |
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| T |
32743288 |
ttcttgagtagcaatgatgaaacaaaaatgaaaataaaagtctcctttatcctattttcctaattcatataaaaaaaaattacatatacacattaaggaa |
32743387 |
T |
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| Q |
215 |
taaaaga |
221 |
Q |
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| T |
32743388 |
taaaaga |
32743394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 95 - 185
Target Start/End: Original strand, 40071792 - 40071884
Alignment:
| Q |
95 |
gaacaaccatttttcataaacttct---tgagcaacaatgatgaaacaaaaatgaaaatagaagcctcctttatactcttttcctaattcacat |
185 |
Q |
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| T |
40071792 |
gaacaaccatttttcataaacttcttcatgaacagcaaggatgaaac-aaaatgaaaaaagaagcatcatttatcctattttcctaattcacat |
40071884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 653001 - 653066
Alignment:
| Q |
56 |
aagaggtatcatttaatagttgtttggagaaagtgacga-gaacaaccatttttcataaacttctt |
120 |
Q |
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| T |
653001 |
aagagctaccatctaatagtttcttagagatagtgacgatgaacaaccatttttcataaacttctt |
653066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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