View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13910_low_7 (Length: 216)

Name: NF13910_low_7
Description: NF13910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13910_low_7
NF13910_low_7
[»] chr4 (2 HSPs)
chr4 (4-90)||(43942924-43943010)
chr4 (187-216)||(43943107-43943136)
[»] chr3 (2 HSPs)
chr3 (4-90)||(5884927-5885013)
chr3 (187-216)||(5884801-5884830)
[»] chr6 (3 HSPs)
chr6 (4-90)||(16856698-16856784)
chr6 (4-87)||(26615826-26615910)
chr6 (4-87)||(26721754-26721838)
[»] scaffold0182 (1 HSPs)
scaffold0182 (4-90)||(10673-10759)
[»] chr2 (2 HSPs)
chr2 (11-90)||(653241-653321)
chr2 (11-90)||(40071981-40072061)
[»] chr5 (1 HSPs)
chr5 (12-93)||(27280757-27280839)


Alignment Details
Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 43942924 - 43943010
Alignment:
Q  4 cattttaactcttcatctcttgattattaattgtttctttggcatgatagggagtcaaattacttttagattggtcaaatatttaag 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43942924 cattttaactcttcatctcttgattattaattgtttctttggcatgatagggagtcaaattacttttagattggtcaaatatttaag 43943010  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 216
Target Start/End: Original strand, 43943107 - 43943136
Alignment:
Q  187 gcattaggaaaataggatagataattattc 216  Q
    ||||||||||||||||||||||||||||||    
T  43943107 gcattaggaaaataggatagataattattc 43943136  T

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Target: chr3 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 5885013 - 5884927
Alignment:
Q  4 cattttaactcttcatctcttgattattaattgtttctttggcatgatagggagtcaaattacttttagattggtcaaatatttaag 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5885013 cattttaactcttcatctcttgattattaattgtttctttggcatgatagggagtcaaattacttttagattggtcaaatatttaag 5884927  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 216
Target Start/End: Complemental strand, 5884830 - 5884801
Alignment:
Q  187 gcattaggaaaataggatagataattattc 216  Q
    ||||||||||||||||||||||||||||||    
T  5884830 gcattaggaaaataggatagataattattc 5884801  T

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Target: chr6 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 16856698 - 16856784
Alignment:
Q  4 cattttaactcttcatctcttgattattaattgtttctttggcatgatagggagtcaaattacttttagattggtcaaatatttaag 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  16856698 cattttaactcttcatctcttgattattaattgtttctttggcatgatagggagtccagttacttttagattggtcaaatatttaag 16856784  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 26615910 - 26615826
Alignment:
Q  4 cattttaactcttcatctcttgattattaatt-gtttctttggcatgatagggagtcaaattacttttagattggtcaaatattt 87  Q
    |||||||||||||||||||||||||||||||| |||||| || ||||||||| | |||| ||||| ||||||| |||||||||||    
T  26615910 cattttaactcttcatctcttgattattaattggtttctatgacatgataggaaatcaagttactcttagattagtcaaatattt 26615826  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 26721838 - 26721754
Alignment:
Q  4 cattttaactcttcatctcttgattattaatt-gtttctttggcatgatagggagtcaaattacttttagattggtcaaatattt 87  Q
    |||||||||||||||||||||||||||||||| |||||| || ||||||||| | |||| ||||| ||||||| |||||||||||    
T  26721838 cattttaactcttcatctcttgattattaattggtttctatgacatgataggaaatcaagttactcttagattagtcaaatattt 26721754  T

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Target: scaffold0182 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 10759 - 10673
Alignment:
Q  4 cattttaactcttcatctcttgattattaattgtttctttggcatgatagggagtcaaattacttttagattggtcaaatatttaag 90  Q
    |||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10759 cattttaacttttcatctcttgactattaattttttctttggcatgatagggagtcaaattacttttagattggtcaaatatttaag 10673  T

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Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 653321 - 653241
Alignment:
Q  11 actcttcatctcttgattattaattg-tttctttggcatgatagggagtcaaattacttttagattggtcaaatatttaag 90  Q
    |||||||||||||||||||| ||||| ||| | || ||||||||||| |||| ||||| ||||||||||||||||||||||    
T  653321 actcttcatctcttgattatcaattggtttatatgacatgatagggaatcaacttactcttagattggtcaaatatttaag 653241  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 40072061 - 40071981
Alignment:
Q  11 actcttcatctcttgattattaattg-tttctttggcatgatagggagtcaaattacttttagattggtcaaatatttaag 90  Q
    |||||||||||||||||||||| ||| ||||| || ||| |||||||||||| ||||| ||||||||||||| ||||||||    
T  40072061 actcttcatctcttgattattatttggtttctatgacattatagggagtcaagttactcttagattggtcaagtatttaag 40071981  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 27280839 - 27280757
Alignment:
Q  12 ctcttcatctcttgattattaattgtttctt-tggcatgatagggagtcaaattacttttagattggtcaaatatttaagttc 93  Q
    |||||||||||||||||||||| || || || || |||| ||||||||||| |||||||||||| ||| ||| ||||||||||    
T  27280839 ctcttcatctcttgattattaaatgatttttatgccatggtagggagtcaagttacttttagatcggtaaaacatttaagttc 27280757  T

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