View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13911_high_11 (Length: 271)
Name: NF13911_high_11
Description: NF13911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13911_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 10557518 - 10557286
Alignment:
| Q |
20 |
gttactgctgatatcaagttttctaagggtagaagcatttgcaacagaagtgggcattagacccgagaattgattgacaccaatttcaaacactttgaga |
119 |
Q |
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| T |
10557518 |
gttactgctgatatcaagttttctaagggtagaagcatttgcaacagaagtaggcattagacccgagaattgattgacaccaatttcaaacactttgaga |
10557419 |
T |
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| Q |
120 |
ttggggagggagttgaacatcttgggtggaagagagccatctatttgattggctgcagatgaaaagatagcaagagatgacatgttgtaaagacatgaag |
219 |
Q |
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| T |
10557418 |
ttggggagggagttgaacatgttgggtggaagagagccatctatttgattggctgcagatgaaaagatagcaagagatgacatgttgtaaagacatgaag |
10557319 |
T |
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| Q |
220 |
gaactgtaccagatagtttgttgagccccaatg |
252 |
Q |
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| T |
10557318 |
gaactgtaccagatagtttgttgagccccaatg |
10557286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 27 - 243
Target Start/End: Complemental strand, 10549384 - 10549168
Alignment:
| Q |
27 |
ctgatatcaagttttctaagggtagaagcatttgcaacagaagtgggcattagacccgagaattgattgacaccaatttcaaacactttgagattgggga |
126 |
Q |
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| T |
10549384 |
ctgatatcaagttctgcaagtgtagaagcattttcaacagaaatgggaattagacctgaaatttgattaccactgattgcaaatactttaagataaggga |
10549285 |
T |
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| Q |
127 |
gggagttgaacatcttgggtggaagagagccatctatttgattggctgcagatgaaaagatagcaagagatgacatgttgtaaagacatgaaggaactgt |
226 |
Q |
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| T |
10549284 |
gagtgttaaacatgttggatggaagtgagccatcaaactgatttgatgcagctgagatcatagtaagagatgacatattgtaaagacacaaaggaaatgt |
10549185 |
T |
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| Q |
227 |
accagatagtttgttga |
243 |
Q |
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| T |
10549184 |
accagatattttgttga |
10549168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 19607603 - 19607698
Alignment:
| Q |
147 |
ggaagagagccatctatttgattggctgcagatgaaaagatagcaagagatgacatgttgtaaagacatgaaggaactgtaccagatagtttgttg |
242 |
Q |
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| T |
19607603 |
ggaagagagccattaaagtgattagctgcagctgatatcatagtaagagatgacatattgaaaagacaagaaggaaatgtaccagataatttgttg |
19607698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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