View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13911_high_2 (Length: 585)
Name: NF13911_high_2
Description: NF13911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13911_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 19 - 581
Target Start/End: Original strand, 12952720 - 12953282
Alignment:
| Q |
19 |
tatacacatcacatttctcggataattgaccaccactgccgtattcaggagcaatgtaacaaacagttcctctcatactcggtgtgctacttattccacc |
118 |
Q |
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| T |
12952720 |
tatacacatcacatttctcggataattgaccaccaccaccgtattcaggagcaatgtaacaaacagttcctctcatactcggtgtgctacttattccacc |
12952819 |
T |
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| Q |
119 |
actcttcggtatatcaccattaccccaatcttgactatttctccttgcgttagtcctaagctcgccgcttaaaccatccaaccaccaatcaatactccct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12952820 |
actcttcggtatatcaccattaccccaatcttgactatttctccttccgttagtcctaagctcgccgcttaaaccatccaaccaccaatcaatactccct |
12952919 |
T |
|
| Q |
219 |
ctactactcttacttttcctctttttctttttctctactgctgcgccgcctacatcctcgtctctctgccaccacgattcccctccattgccgcgacaat |
318 |
Q |
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||||||||||||||||||||||||||||| ||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12952920 |
ctactactcttacttttcctctttttcttcttctctaatggtgggccgcctacatccttgtctctctgccaccacgattcccctccattgccgcgacaat |
12953019 |
T |
|
| Q |
319 |
caaggcttctctttttcttcctactcttcttcgaaagctcttcacaaaattcctccttccaccattcccttggtttcctattcttctttcctttaacttt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12953020 |
caaggcttctctttttcttcctactcttcttcgaaagctcttcacaaaattcctccttccaccattcccttggttttctattcttctttcctttaacttt |
12953119 |
T |
|
| Q |
419 |
ctcctcatcaagtgaagcccaccattccaatttcttcctctgcttcttcttaccctccaccttcgactgcgctgccaccacatcaccaccaccaccggaa |
518 |
Q |
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| T |
12953120 |
ctcctcatcaagtgaagcccaccattccaatttcttcctctgcttcttcttaccctccaccttcgactgcgctgccaccacatcaccaccaccaccggaa |
12953219 |
T |
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| Q |
519 |
caaattgaagaaccagaaccaacccactcactactcttaggtctctctttcttcatctcactc |
581 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12953220 |
caaatcgaagaaccagaaccaacccactcactactcttaggtctctctttctttatctcactc |
12953282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 46223400 - 46223338
Alignment:
| Q |
62 |
ttcaggagcaatgtaacaaacagttcctctcatactcggtgtgctacttattccaccactctt |
124 |
Q |
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||||||||||| ||| ||||||||||||||||||| || || ||||| ||| |||||||||| |
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| T |
46223400 |
ttcaggagcaacataaaaaacagttcctctcatacttggagtactactaatttcaccactctt |
46223338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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