View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13911_high_6 (Length: 429)
Name: NF13911_high_6
Description: NF13911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13911_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 2 - 412
Target Start/End: Original strand, 8294483 - 8294897
Alignment:
| Q |
2 |
ttggctcagttgatgtctggttgattgtgagtgacagttctgaagaaggtattgcaaaaaatttctttttgaatccagtgactgatgttagaatcacgat |
101 |
Q |
| |
|
||||||||||||| | ||||||||||| |||||| ||||||| ||||| ||||||||| |||||| ||||||||||||| |||||||||||||| ||| |
|
|
| T |
8294483 |
ttggctcagttgaaggatggttgattgtaagtgactattctgaaaaaggttttgcaaaaattttcttcttgaatccagtgattgatgttagaatcatgat |
8294582 |
T |
|
| Q |
102 |
accatcaaagttgtacatgcctcccacctcttccatcgtcaatgatggaaagttatttgtgagaaaaatggtggcctcttcgacaccaaattgtgatggt |
201 |
Q |
| |
|
||||||||| |||||| |||| ||| ||||||| || | || ||| | | | ||| ||| ||||||||||||| | |||||||||||||||| |
|
|
| T |
8294583 |
accatcaaaattgtacttgccctccaactcttccgtcccaggtaatagaatatcacgtttgaagaaattggtggcctcttccaaaccaaattgtgatggt |
8294682 |
T |
|
| Q |
202 |
tctgattgttatttagtcgttcttttgagtgattt----cacattgcaatttacaaactctttgaaaagtcatggactatagttgagccagataaggatt |
297 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||| |||||| ||||||||||| ||||||||||||||||||| ||||||| ||||| |
|
|
| T |
8294683 |
tctgattgttatttagtcggtcttttgagtgatttttgccacattgtaatttataaactctttgaccagtcatggactatagttgaaccagatagggatt |
8294782 |
T |
|
| Q |
298 |
cagggacttcttttatgaacatagaaattattggtacaaaattgtacgtaactgacccatcctcagactctatattggtttatgatcttaaagactccat |
397 |
Q |
| |
|
|| ||||| ||||||| | | ||||||||||||||||||||||| | || | ||||||||||| | ||||| || ||||||||||| |||||||||| |
|
|
| T |
8294783 |
caaagacttattttatggatgtggaaattattggtacaaaattgtatgcaagtaacccatcctcatattctattttagtttatgatctcaaagactccac |
8294882 |
T |
|
| Q |
398 |
taatggacctccaaa |
412 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
8294883 |
aaatggacctccaaa |
8294897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 2 - 413
Target Start/End: Original strand, 30148953 - 30149362
Alignment:
| Q |
2 |
ttggctcagttgatgtctggttgattgtgagtgacagttctgaagaaggtattgcaaaaaatttctttttgaatccagtgactgatgttagaatcacgat |
101 |
Q |
| |
|
|||| |||||||| | ||||||||||||| ||||| ||||||| | ||| ||||||||| |||||| | |||||| ||| |||||||||||||||||| |
|
|
| T |
30148953 |
ttgggtcagttgaaggctggttgattgtgggtgacctttctgaaaagggttttgcaaaaattttcttctcaaatccaatgaatgatgttagaatcacgat |
30149052 |
T |
|
| Q |
102 |
accatcaaagttgtacatgcctcccacctcttccatcgtcaatgatggaaagttatttgtgagaaaaatggtggcctcttcgacaccaaattgtgatggt |
201 |
Q |
| |
|
|||||||||| || || |||| || || | ||| || |||||||||||| |||||| ||||||||||||||||| | |||||||| ||||||| |
|
|
| T |
30149053 |
accatcaaagctgcacttgcccccttccgc--ccaatgt----gatggaaagttacatgtgagcaaaatggtggcctcttccaaaccaaattttgatggt |
30149146 |
T |
|
| Q |
202 |
tctgattgttatttagtcgttcttttgagtgatt----tcacattgcaatttacaaactctttgaaaagtcatggactatagttgagccagataaggatt |
297 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| ||||||||||||||| ||||| ||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
30149147 |
tctgattgttatttagtcggtcttttaggtgatgattgtcacattgcaatttataaactttttgataagtcatggattatagttgagccagataaggatt |
30149246 |
T |
|
| Q |
298 |
cagggacttcttttatgaacatagaaattattggtacaaaattgtacgtaactgacccatcctcagactctatattggtttatgatcttaaagactccat |
397 |
Q |
| |
|
|| |||||| |||||| | | |||||||||||||| ||||||| ||| |||| |||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
30149247 |
caaggacttattttatagatttggaaattattggtacgcaattgtatgtatgtgacgggtcctcagattctatattggtttatgatctcaaagactccat |
30149346 |
T |
|
| Q |
398 |
taatggacctccaaag |
413 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30149347 |
taatggacctccaaag |
30149362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 2 - 413
Target Start/End: Original strand, 30153674 - 30154101
Alignment:
| Q |
2 |
ttggctcagttgatgtctggttgattgtgagtgacagttctgaagaaggtattgcaaaaaatttctttttgaatccagtgactgatgttagaatcacgat |
101 |
Q |
| |
|
||||||||||||| | ||||||||||||| ||||| ||| ||| | ||| |||| ||| |||||| | |||||||| | |||||||||||||||||| |
|
|
| T |
30153674 |
ttggctcagttgaaggctggttgattgtgggtgacttttccgaaaagggttttgcgaaatttttcttctcaaatccagtaaatgatgttagaatcacgat |
30153773 |
T |
|
| Q |
102 |
accatcaaagttgtacatgcctcccacctcttccatcgtcaatgatggaaagttatttgtgagaaaaatggtggcctcttcgacaccaaattgtgatggt |
201 |
Q |
| |
|
|||||||||| || || |||| ||||||| | || ||||| |||| ||||| ||||||||||||||||| | |||||||||||| ||| |
|
|
| T |
30153774 |
accatcaaagctgcacttgcc------ctcttccgcccaatgtggtggaatgttacatgtgaccaaaatggtggcctcttccaaaccaaattgtgacggt |
30153867 |
T |
|
| Q |
202 |
tctgattgttatttagtcgttcttttgagt---------------------gatt-tcacattgcaatttacaaactctttgaaaagtcatggactatag |
279 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||| ||||||||||||||| ||||| ||||| ||||| |||| ||||| |
|
|
| T |
30153868 |
tctgattgttatttagtcggtcttttgagtgatgatggtcttttgagtgatgattgtcacattgcaatttataaactttttgataagtcgtggattatag |
30153967 |
T |
|
| Q |
280 |
ttgagccagataaggattcagggacttcttttatgaacatagaaattattggtacaaaattgtacgtaactgacccatcctcagactctatattggttta |
379 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||| | | ||||||||||||||||||||||| || | ||||| |||||||| | | |||| ||||| |
|
|
| T |
30153968 |
ttgagccagataaggattcaaggacttattttatggatgtggaaattattggtacaaaattgtatgttagtgaccggtcctcagattatgtattcgttta |
30154067 |
T |
|
| Q |
380 |
tgatcttaaagactccattaatggacctccaaag |
413 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||| |
|
|
| T |
30154068 |
tgatctcaaagactccgttaatggacctccaaag |
30154101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 246 - 413
Target Start/End: Original strand, 30155527 - 30155694
Alignment:
| Q |
246 |
atttacaaactctttgaaaagtcatggactatagttgagccagataaggattcagggacttcttttatgaacatagaaattattggtacaaaattgtacg |
345 |
Q |
| |
|
||||| ||||| ||||| ||||| |||| ||||||||||||||||||||||||| |||||| |||||| | | ||||||||||||||||||||||| | |
|
|
| T |
30155527 |
atttataaactttttgataagtcgtggattatagttgagccagataaggattcaaggacttattttatagatgtggaaattattggtacaaaattgtatg |
30155626 |
T |
|
| Q |
346 |
taactgacccatcctcagactctatattggtttatgatcttaaagactccattaatggacctccaaag |
413 |
Q |
| |
|
|| |||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30155627 |
tatgtgacgggtcctcagattctatattggtttatgatctcaaagactccattaatggacctccaaag |
30155694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 6e-81; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 2 - 413
Target Start/End: Complemental strand, 25747439 - 25747045
Alignment:
| Q |
2 |
ttggctcagttgatgtctggttgattgtgagtgacagttctgaagaaggtattgcaaaaaatttctttttgaatccagtgactgatgttagaatcacgat |
101 |
Q |
| |
|
|||||||||| || | |||||||||||||||||||| ||||||| ||||| ||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25747439 |
ttggctcagtggacggctggttgattgtgagtgacaattctgaaaaaggttttgcaaaaattttctttttgaatccagtaactgatgttagaatcacgat |
25747340 |
T |
|
| Q |
102 |
accatcaaagttgtacatgcctcccacctcttccatcgtcaatgatggaaagttatttgtgagaaaaatggtggcctcttcgacaccaaattgtgatggt |
201 |
Q |
| |
|
|||||| ||||||||| |||| || ||| | ||| |||| | || |||||| |||||| ||||||||| | ||||||||||||||| |
|
|
| T |
25747339 |
accatcgaagttgtacttgccg---------tcaatcattggtgaaggaatatcatatgtgagtaaaatgacggcctcttccaaaccaaattgtgatgga |
25747249 |
T |
|
| Q |
202 |
tctgattgttatttagtcgttcttttgagtgatt-tcacattgcaatttacaaactctttgaaaagtcatggactatagttgagccagataaggattcag |
300 |
Q |
| |
|
|||||||| ||||||| | ||||||||||||| | ||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
25747248 |
tctgattgctatttagctggccttttgagtgattattacattgcaatttataaactctttgaaaagtcgtggactatagttgaaccagataaggattcag |
25747149 |
T |
|
| Q |
301 |
ggacttcttttatgaacatagaaattattggtacaaaattgtacgtaactgacccatcctcagactctatattggtttatgatcttaaagactccattaa |
400 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||| || |||| | | |||| | |||||||||||||||| |||||||||| ||| |
|
|
| T |
25747148 |
ggacttattttatggacatagaaattattggtacaaaattatatgtaaaaggctcatcat---------tattggtttatgatctgaaagactccactaa |
25747058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 2 - 409
Target Start/End: Complemental strand, 25756007 - 25755608
Alignment:
| Q |
2 |
ttggctcagttgatgtctggttgattgtgagtgacagttctgaagaaggtattgcaaaaaatttctttttgaatccagtgactgatgttagaatcacgat |
101 |
Q |
| |
|
||||||||||||| | |||||||||||| ||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
25756007 |
ttggctcagttgaaggttggttgattgtggttgacaactctgataaaggttttgcaaaatttttctttttgaatccagtgactgatgttagaatcacaat |
25755908 |
T |
|
| Q |
102 |
accatcaaagttgtacatgcctcccacctcttccatcgtcaatgatggaaagttatttgtgagaaaaatggtggcctcttcgacaccaaattgtgatggt |
201 |
Q |
| |
|
||||||||||||| || |||| | | || | ||||| || ||| ||||||||||||| ||||||||| | |||||||||||||||| |
|
|
| T |
25755907 |
accatcaaagttgcacttgccctcaa-----tcattggtcaaagaa-------tatatgtgagaaaaatgacggcctcttccaaaccaaattgtgatggt |
25755820 |
T |
|
| Q |
202 |
tctgattgttatttagtcgttcttttgagtgatt----tcacattgcaatttacaaactctttgaaaagtcatggactatagttgagccagataaggatt |
297 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25755819 |
tctgattgttatttagttggccttttgagtgattattgtcacattgcaatttataaactctttgaaaagtcatggactatagttgagccagataaggatt |
25755720 |
T |
|
| Q |
298 |
cagggacttcttttatgaacatagaaattattggtacaaaattgtacgtaactgacccatcctcagactctatattggtttatgatcttaaagactccat |
397 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||| |||||| || |||| | | |||| ||| | || ||||||||||||||||| |||||||||| |
|
|
| T |
25755719 |
cagggacttattttactgacatagaaattattggtagaaaattatatgtaatcggctcatcgtcaaattcaatattggtttatgatctgaaagactccac |
25755620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 2 - 413
Target Start/End: Complemental strand, 25763960 - 25763551
Alignment:
| Q |
2 |
ttggctcagttgatgtctggttgattgtgagtgacagttctgaagaaggtattgcaaaaaatttctttttgaatccagtgactgatgttagaatcacgat |
101 |
Q |
| |
|
|||||||| |||| | ||||||||||||| |||||| || || | ||||| ||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25763960 |
ttggctcaattgaaggctggttgattgtgtgtgacaattttggaaaaggttttgcaaagtttttctttttgaatccagtgactaatgttagaatcacgat |
25763861 |
T |
|
| Q |
102 |
accatcaaagttgtacatgcctcccacctcttccatcgtcaatgatggaaagttatttgtgagaaaaatggtggcctcttcgacaccaaattgtgatggt |
201 |
Q |
| |
|
||||||||||||| | | || ||||||| | ||||||||| ||| ||||| |||||||||||||||||| | |||||| ||||||||| |
|
|
| T |
25763860 |
accatcaaagttgcaatttcc------ctcttccgcccaatatgatggaatattacctgtgaaaaaaatggtggcctcttccaaaccaaactgtgatggt |
25763767 |
T |
|
| Q |
202 |
tctgattgttatttagtcgttcttttgagtgatt----tcacattgcaatttacaaactctttgaaaagtcatggactatagttgagccagataaggatt |
297 |
Q |
| |
|
|| ||||||||||||||| |||| ||| ||||| ||||||||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| |
|
|
| T |
25763766 |
tcggattgttatttagtctgtcttctgactgattgttgtcacattgcaatttataaactctttgacaaggaatggactatagttgagtcagataaggatt |
25763667 |
T |
|
| Q |
298 |
cagggacttcttttatgaacatagaaattattggtacaaaattgtacgtaactgacccatcctcagactctatattggtttatgatcttaaagactccat |
397 |
Q |
| |
|
||| |||| ||||| | ||||||||||||| |||||||||| || ||||| || |||||||| | ||||||||||||||||||||||||||||| | |
|
|
| T |
25763666 |
cagcgactaattttacggacatagaaattatcagtacaaaattatatgtaacaaactcatcctcaaattctatattggtttatgatcttaaagactcaac |
25763567 |
T |
|
| Q |
398 |
taatggacctccaaag |
413 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
25763566 |
taatggacctccaaag |
25763551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 2 - 396
Target Start/End: Complemental strand, 25741269 - 25740880
Alignment:
| Q |
2 |
ttggctcagttgatgtctggttgattgtgagtgacagttctgaagaaggtattgcaaaaaatttctttttgaatccagtgactgatgttagaatcacgat |
101 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||| ||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
25741269 |
ttggctcagttgacggctggttgattgtgagtgacaattctgaaaaaggttttgcaaaaattttctttttgaatccagtgactgatgttagaatcactat |
25741170 |
T |
|
| Q |
102 |
accatcaaagttgtacatgcctcccacctcttccatcgtcaatgatggaaagttatttgtgagaaaaatggtggcctcttcgacaccaaattgtgatggt |
201 |
Q |
| |
|
||||||||||||| || |||| || ||||| | | | | | || ||||| |||| || ||||||||| | |||||||||||||||| |
|
|
| T |
25741169 |
accatcaaagttgcacttgccc---------tcaatcgttggtcaaagtatatcatatgtgacaaaactgacggcctcttccaaaccaaattgtgatggt |
25741079 |
T |
|
| Q |
202 |
tctgattgttatttagtcgttcttttgagtgatt----tcacattgcaatttacaaactctttgaaaagtcatggactatagttgagccagataaggatt |
297 |
Q |
| |
|
|||||||| ||||||| | ||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25741078 |
tctgattgctatttagctggccttttcagtgattattgtcacatagcaatttataaactctttgaaaagtcatggactatagttgagtcagataaggatt |
25740979 |
T |
|
| Q |
298 |
cagggacttcttttatgaacatagaaattattggtacaaaattgtacgtaactgacccatcctcagactctatattggtttatgatcttaaagactcca |
396 |
Q |
| |
|
||||||||| ||||| | ||||||||||||||||||||||||| || |||| | | ||| ||||| ||||| |||||||||||||||||||| |||| |
|
|
| T |
25740978 |
cagggacttattttacggacatagaaattattggtacaaaattatatgtaataggctcattgtcagattctattttggtttatgatcttaaagattcca |
25740880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 2 - 396
Target Start/End: Complemental strand, 25733568 - 25733179
Alignment:
| Q |
2 |
ttggctcagttgatgtctggttgattgtgagtgacagttctgaagaaggtattgcaaaaaatttctttttgaatccagtgactgatgttagaatcacgat |
101 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| ||||||| ||||| |||||||| ||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
25733568 |
ttggctcagttgacggctggttgattgtgagtgactattctgaaaaaggttttgcaaaagttttctttttgaatcccgtgagtgatgttagaatcacgat |
25733469 |
T |
|
| Q |
102 |
accatcaaagttgtacatgcctcccacctcttccatcgtcaatgatggaaagttatttgtgagaaaaatggtggcctcttcgacaccaaattgtgatggt |
201 |
Q |
| |
|
|||||||||||||||| || || || ||| | | | ||| | || |||||| |||||| ||| ||||| | |||||||||||||||| |
|
|
| T |
25733468 |
accatcaaagttgtacttg---------tcctcaatcattggtcaaagaatatcatatgtgagtaaaatgacggcttcttccaaaccaaattgtgatggt |
25733378 |
T |
|
| Q |
202 |
tctgattgttatttagtcgttcttttgagtgatt----tcacattgcaatttacaaactctttgaaaagtcatggactatagttgagccagataaggatt |
297 |
Q |
| |
|
|||||||| ||||||| | ||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| |||| |
|
|
| T |
25733377 |
tctgattgctatttagctggccttttgagtgattattgtcacattgcaatttataaactctttgaaaagtcgtggactatagttgaaccagataaagatt |
25733278 |
T |
|
| Q |
298 |
cagggacttcttttatgaacatagaaattattggtacaaaattgtacgtaactgacccatcctcagactctatattggtttatgatcttaaagactcca |
396 |
Q |
| |
|
||||||||| ||||| | ||||||||||||||||||||||||| || |||| | | ||| ||||| ||||| |||||||||||||||||||| |||| |
|
|
| T |
25733277 |
cagggacttattttacggacatagaaattattggtacaaaattatatgtaataggctcattgtcagattctattttggtttatgatcttaaagattcca |
25733179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 40462558 - 40462485
Alignment:
| Q |
2 |
ttggctcagttgatgtctggttgattgtgagtgacagttctgaagaaggtattgcaaaaaatttctttttgaat |
75 |
Q |
| |
|
|||||||| |||| | ||||||||| ||| ||||| |||| |||||||| |||||||||||||||| |||||| |
|
|
| T |
40462558 |
ttggctcaattgaaggctggttgatcgtgggtgacttttctcaagaaggttttgcaaaaaatttcttcttgaat |
40462485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 325 - 396
Target Start/End: Complemental strand, 16489898 - 16489827
Alignment:
| Q |
325 |
ttattggtacaaaattgtacgtaactgacccatcctcagactctatattggtttatgatcttaaagactcca |
396 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
16489898 |
ttattggtacaaaattgtatgtaaatgacccatcctcggactcgatattggtttatgatcttaaagactcca |
16489827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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