View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13911_low_1 (Length: 741)
Name: NF13911_low_1
Description: NF13911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13911_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 633; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 19 - 723
Target Start/End: Complemental strand, 43202625 - 43201921
Alignment:
| Q |
19 |
atgacagtatatttcaatatgtttagtccgctcgtgaaacacgggttttgcagcaatatgtaaggctgcttgactgtcacaacaaagtcttatcggattt |
118 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43202625 |
atgacagtatatttcaatatgtttagtccgccggtgaaacacgggttttacagcaatatgtaaggctgcttgactgtcacaacaaagtcttatcggattt |
43202526 |
T |
|
| Q |
119 |
gggtattgtacgccgagtgctaccaacaattatttcaaccacttcaactcacatgtggtgacagccatcgatcgatactctgcctcggccgaggaacgag |
218 |
Q |
| |
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|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43202525 |
gggtattgtatgccgagtgctaccaacaattctttcaaccacttcaactcacatgtggtgacagccatcgatcgatactctgcctcggccgaggaacgag |
43202426 |
T |
|
| Q |
219 |
aaacaatatgttttttcttagttttccaagatataggtgaatttccaagttgaatgaaccatccagaaagagacttgcgagtcaaaggacaactccccca |
318 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43202425 |
aaaccgtatgttgtttcttagttttccatgatataggtgaatttccaagttgaatgaaccatccagaaagagacttgcgagtcaaaggacaactccccca |
43202326 |
T |
|
| Q |
319 |
atatgaatcacaccaagcatacatatgtaaatcactatctgacctcaacagtattcctttccctggattaccttttaagtagtgaaccacacgcaatgcg |
418 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43202325 |
atctgaatcacaccaagcatacatctgtaaatcactatctgacctcaacagtattcctttccctggattaccttttaagtagtgaaccacacgcaatgcg |
43202226 |
T |
|
| Q |
419 |
gcctcccaatgcagctctcgtggttgctgcataaattgtgcgagaatatgcacacagtaggacaactctggacgtgttgctgtgagatagataagtcttc |
518 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43202225 |
gcctcccaatgaggctctcgtggttgctgcataaattgtgcgagaatatgcacacagtaggataactctggacgtgttgctgtgagatagataagtcttc |
43202126 |
T |
|
| Q |
519 |
ccaccagacgcctatagcactcaggatcaggaagaaaaggtccttcagctagagctagattatgattttgctccatcgggaatgaggtaggcttcgctcc |
618 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43202125 |
ccaccagatgcctataacactcaggatcaggaagaaaaggtccttcagctagagctagattatgattttgctccatcgggaatgaggcaggcttcgctcc |
43202026 |
T |
|
| Q |
619 |
aagtaaaccagcctcagaaacaatgtccaaagcatacttacgttgacacaagaaaatcccttcaggacttcgagccacttctatgcccaaaaaatacttc |
718 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43202025 |
aagtaaaccagcctcataaacaatgtccaaagcatacttacgttgacacaagaaaatcccttcaggacttcgagccacttctatgcccaaaaaatacttc |
43201926 |
T |
|
| Q |
719 |
aacgc |
723 |
Q |
| |
|
||||| |
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| T |
43201925 |
aacgc |
43201921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 302 - 713
Target Start/End: Complemental strand, 40605858 - 40605448
Alignment:
| Q |
302 |
aaaggacaactcccccaatatgaatcacaccaagcata--catatgtaaatcactatctgacctcaacagtattcctttccctggattaccttttaagta |
399 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||| |
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| T |
40605858 |
aaaggacaactcccccaatccgaatcacaccaagcatatacatctgtaaatcactatctgacctcaacattattccttgcccaggattaccttttaagta |
40605759 |
T |
|
| Q |
400 |
gtgaaccacacgcaatgcggcctcccaatgcagctctcgtggttgctgcataaattgtgcgagaatatgcacacagtaggacaactctggacgtgttgct |
499 |
Q |
| |
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| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
40605758 |
gcgaaccacacgcaatgcagcctcccaatgcggctctcgtggttgctgcataaattgtgcgagaatatgcacacagtaggacaactctgaacgtgtcg-- |
40605661 |
T |
|
| Q |
500 |
gtgagatagataagtcttcccaccagacgcctatagcactcaggatcaggaagaaaaggtccttcagctagagctagattatgattttgctccatcggga |
599 |
Q |
| |
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| ||||||||||||| |||||||||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||| | | |
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|
| T |
40605660 |
-taagatagataagtcatcccaccagacgcctatatcactcaggatcagggagacaaggtcattcagctagagctagattatgattttgctccattgaaa |
40605562 |
T |
|
| Q |
600 |
atgaggtaggcttcgctccaagtaaaccagcctcagaaacaatgtccaaagcatacttacgttgacacaagaaaatcccttcaggacttcgagccacttc |
699 |
Q |
| |
|
|||||| |||||| |||||||||||||| |||||||||| |||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40605561 |
atgaggcaggctttgctccaagtaaaccggcctcagaaataatgtccagagcatatttacgctgacacaagaaaatcccttcaggacttcgagccacttc |
40605462 |
T |
|
| Q |
700 |
tatgcccaaaaaat |
713 |
Q |
| |
|
|||||||||||||| |
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|
| T |
40605461 |
tatgcccaaaaaat |
40605448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 40608881 - 40608597
Alignment:
| Q |
19 |
atgacagtatatttcaatatgtttagtcc--gctcgtgaaacacgggttttgcagcaatatgtaaggctgcttgactgtcacaacaaagtcttatcggat |
116 |
Q |
| |
|
|||||| | ||||||||||||||||| || |||||| ||| | || |||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
40608881 |
atgacaatctatttcaatatgtttagcccccgctcgttaaatattgggtttgcagcaatatgtaaggcggcttgattgtcacaacaaagtcttatcggat |
40608782 |
T |
|
| Q |
117 |
ttgggtattgtacgccgagtgctaccaacaattatttcaa-------ccacttcaactcacatgtggtgacagccatcgatcgatactctgcctcggccg |
209 |
Q |
| |
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|||||| ||||| | |||| ||||||||||| | |||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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|
| T |
40608781 |
ttgggtgttgtatgtcgagcgctaccaacaactctttcaagtttcaaccacttcaactcacatgtggtgacatccatcgatcgatactctgcctccgcca |
40608682 |
T |
|
| Q |
210 |
aggaacgagaaacaatatgttttttcttagttttccaagatataggtgaatttccaagttgaatgaaccatccagaaagagactt |
294 |
Q |
| |
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||||||||||||| |||||| |||||||||||||||| ||| |||||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
40608681 |
aggaacgagaaaccgtatgttgtttcttagttttccaatatacaggtgaattttcaagttgaatgaaccatccataaagagactt |
40608597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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