View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13911_low_10 (Length: 277)
Name: NF13911_low_10
Description: NF13911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13911_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 149 - 258
Target Start/End: Original strand, 10343388 - 10343497
Alignment:
| Q |
149 |
tagtactacttggtcctgcgcctacatcaacaacttcatttattatgggttggttcaacatagttgaaataacattattaccactattgttacaccatga |
248 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10343388 |
tagtactatttggtcctgcgcctacatcaacaacttcatttattatgcgttggttcaacatagttgaaataacattattaccactattgttacaccatga |
10343487 |
T |
|
| Q |
249 |
tgttgatgaa |
258 |
Q |
| |
|
|||||||||| |
|
|
| T |
10343488 |
tgttgatgaa |
10343497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 10343206 - 10343341
Alignment:
| Q |
21 |
tcatcaacataatggcggaacaatagtcgtaacagtgtcatttcatctatgtggaaccaacacatgatgattgaagttgttgctgcaaatgcaggaccaa |
120 |
Q |
| |
|
|||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
10343206 |
tcattaacataatgatggaacaatagtggtaacagtgtcatttcatctatgtggaaccaacacatgatgattgaagttgttgctgcatgtgcaagaccaa |
10343305 |
T |
|
| Q |
121 |
ataatactgcaacttagtctcaaatgaatagtacta |
156 |
Q |
| |
|
|| ||||| ||| ||||||||||||||||||||| |
|
|
| T |
10343306 |
gtagcactgcgactcagtctcaaatgaatagtacta |
10343341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 218
Target Start/End: Original strand, 10181507 - 10181578
Alignment:
| Q |
147 |
aatagtactacttggtcctgcgcctacatcaacaacttcatttattatgggttggttcaacatagttgaaat |
218 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||||||||||| || ||| ||||||| |||||||||||||| |
|
|
| T |
10181507 |
aatagtactacttggacctgcacctacagcaacaacttcattcatcatgtgttggtttaacatagttgaaat |
10181578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 10181581 - 10181533
Alignment:
| Q |
57 |
gtcatttcatctatgtggaaccaacacatgatgattgaagttgttgctg |
105 |
Q |
| |
|
||||||||| |||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
10181581 |
gtcatttcaactatgttaaaccaacacatgatgaatgaagttgttgctg |
10181533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 258
Target Start/End: Complemental strand, 10343309 - 10343205
Alignment:
| Q |
154 |
ctacttggtcctgcgcctacatcaacaacttcatttattatgggttggttcaacatagttgaaataacattattaccactattgttacaccatgatgttg |
253 |
Q |
| |
|
|||||||||| ||| | | || ||||||||||| | || ||| |||||||| |||||| |||||| ||| | |||||||||||||| || ||| ||||| |
|
|
| T |
10343309 |
ctacttggtcttgcacatgcagcaacaacttcaatcatcatgtgttggttccacatagatgaaatgacactgttaccactattgttccatcattatgtta |
10343210 |
T |
|
| Q |
254 |
atgaa |
258 |
Q |
| |
|
||||| |
|
|
| T |
10343209 |
atgaa |
10343205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 10343496 - 10343372
Alignment:
| Q |
21 |
tcatcaacataatggcggaacaatagtcgtaacagtgtcatttcatctatgtggaaccaacacatgatgattgaagttgttgctgcaaatgcaggaccaa |
120 |
Q |
| |
|
|||||||||| |||| | ||||||||| |||| | ||| |||||| |||||| |||||||| ||| || | ||||||||||| || | |||||||||| |
|
|
| T |
10343496 |
tcatcaacatcatggtgtaacaatagtggtaataatgttatttcaactatgttgaaccaacgcataataaatgaagttgttgatgtaggcgcaggaccaa |
10343397 |
T |
|
| Q |
121 |
ataatactgcaacttagtctcaaat |
145 |
Q |
| |
|
||| |||| | ||| ||||||||| |
|
|
| T |
10343396 |
atagtactactactctgtctcaaat |
10343372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University