View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13911_low_12 (Length: 264)

Name: NF13911_low_12
Description: NF13911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13911_low_12
NF13911_low_12
[»] chr5 (1 HSPs)
chr5 (10-246)||(4368048-4368284)
[»] chr8 (3 HSPs)
chr8 (71-202)||(20077379-20077510)
chr8 (130-195)||(25575121-25575186)
chr8 (111-223)||(2997381-2997493)
[»] chr6 (3 HSPs)
chr6 (85-223)||(25420524-25420662)
chr6 (114-223)||(5374237-5374345)
chr6 (111-223)||(34824675-34824787)
[»] chr2 (2 HSPs)
chr2 (71-195)||(18499093-18499217)
chr2 (71-195)||(26360764-26360888)
[»] chr3 (1 HSPs)
chr3 (111-223)||(37192955-37193067)
[»] scaffold0779 (1 HSPs)
scaffold0779 (130-195)||(4731-4796)
[»] chr4 (1 HSPs)
chr4 (119-223)||(2005586-2005690)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 246
Target Start/End: Original strand, 4368048 - 4368284
Alignment:
Q  10 ataattcttcttctcgatcaccagaatctaccaactcaggtattccctgccctaatgcatcttttcactcatttgatcatttatctccatcacatatatc 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  4368048 ataattcttcttctcgatcaccagaatctaccaactcaggtattccctgccctaatgcatcttttcgcccatttgatcatttatctccatcacatatatc 4368147  T
Q  110 attttctatttctgtcacaaaaagtactaagcctaaaacttatagagaagcatgtcagtctaaacattggttagaagctatgaatgttgaattggaagct 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4368148 attttctatttctgtcacaaaaagtactaagcctaaaacttatagagaagcatgtcagtctaaacattggttagaatctatgaatgttgaattggaagct 4368247  T
Q  210 ttagctaagaatggttcttggtagtaagtgggtgtat 246  Q
    |||||||||||||||||||||||||||||||||||||    
T  4368248 ttagctaagaatggttcttggtagtaagtgggtgtat 4368284  T

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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 71 - 202
Target Start/End: Original strand, 20077379 - 20077510
Alignment:
Q  71 ttttcactcatttgatcatttatctccatcacatatatcattttctatttctgtcacaaaaagtactaagcctaaaacttatagagaagcatgtcagtct 170  Q
    |||||| || ||||||||| | ||||||| ||||| |   ||||| |||||| ||||| |||||||| |||||||||| || | ||||||||||||||||    
T  20077379 ttttcattcttttgatcatctttctccattacataaagtgttttccatttctatcacacaaagtactgagcctaaaacctacaaagaagcatgtcagtct 20077478  T
Q  171 aaacattggttagaagctatgaatgttgaatt 202  Q
     ||||||||||  |||||||||||| ||||||    
T  20077479 gaacattggttgaaagctatgaatgatgaatt 20077510  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 25575186 - 25575121
Alignment:
Q  130 aaagtactaagcctaaaacttatagagaagcatgtcagtctaaacattggttagaagctatgaatg 195  Q
    |||||||| |||| ||||| |||| ||| |||||||||||| |||| |||||| ||||||||||||    
T  25575186 aaagtactgagcccaaaacctataaagaggcatgtcagtctgaacactggttacaagctatgaatg 25575121  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 223
Target Start/End: Original strand, 2997381 - 2997493
Alignment:
Q  111 ttttctatttctgtcacaaaaagtactaagcctaaaacttatagagaagcatgtcagtctaaacattggttagaagctatgaatgttgaattggaagctt 210  Q
    |||||||| ||||||||| || ||||| |||| ||||| || | ||||||  |||||||| ||  ||||||| |||||||| |   |||||| ||||| |    
T  2997381 ttttctatgtctgtcacacaatgtactgagccaaaaacctacaaagaagctagtcagtctgaatgttggttaaaagctatggaatctgaattagaagcat 2997480  T
Q  211 tagctaagaatgg 223  Q
    | |||||||||||    
T  2997481 tggctaagaatgg 2997493  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 25420662 - 25420524
Alignment:
Q  85 atcatttatctccatcacatatatcattttctatttctgtcacaaaaagtactaagcctaaaacttatagagaagcatgtcagtctaaacattggttaga 184  Q
    |||||||||| ||  |||||| | | ||||||| |||||||||| |||||||| | || ||||| |||| |||||||||||||||| |||||||||||      
T  25420662 atcatttatcacctacacataaagctttttctacttctgtcacacaaagtactgaacccaaaacctataaagaagcatgtcagtctgaacattggttaag 25420563  T
Q  185 agctatgaatgttgaattggaagctttagctaagaatgg 223  Q
    ||| ||||||  |||||| || ||  ||||||| |||||    
T  25420562 agcaatgaataatgaattagaggcactagctaacaatgg 25420524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 5374345 - 5374237
Alignment:
Q  114 tctatttctgtcacaaaaagtactaagcctaaaacttatagagaagcatgtcagtctaaacattggttagaagctatgaatgttgaattggaagctttag 213  Q
    ||||| ||||||||| |||||||| |||| ||||| ||||   |||||||||||||| | |||||||||   || |||||| ||||||| || |||||||    
T  5374345 tctatctctgtcacacaaagtactgagccaaaaacctataagtaagcatgtcagtctgagcattggttaactgcaatgaat-ttgaattagaggctttag 5374247  T
Q  214 ctaagaatgg 223  Q
    ||||||||||    
T  5374246 ctaagaatgg 5374237  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 223
Target Start/End: Original strand, 34824675 - 34824787
Alignment:
Q  111 ttttctatttctgtcacaaaaagtactaagcctaaaacttatagagaagcatgtcagtctaaacattggttagaagctatgaatgttgaattggaagctt 210  Q
    |||||||| ||||||||| || ||||| |||| ||||| || | ||||||  |||||||| ||  ||||||| |||||||| |   |||||| ||||| |    
T  34824675 ttttctatgtctgtcacacaatgtactgagccaaaaacctacaaagaagctagtcagtctgaatgttggttaaaagctatggaatctgaattagaagcat 34824774  T
Q  211 tagctaagaatgg 223  Q
    |||||||||||||    
T  34824775 tagctaagaatgg 34824787  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 195
Target Start/End: Complemental strand, 18499217 - 18499093
Alignment:
Q  71 ttttcactcatttgatcatttatctccatcacatatatcattttctatttctgtcacaaaaagtactaagcctaaaacttatagagaagcatgtcagtct 170  Q
    ||||||||| ||||||||| | || |||||||||| |   |||||||||||  | ||| |||||||| |||| ||||| |||| ||| |||||||||| |    
T  18499217 ttttcactcctttgatcatctttccccatcacataaagttttttctatttccattacacaaagtactgagcccaaaacctataaagaggcatgtcagttt 18499118  T
Q  171 aaacattggttagaagctatgaatg 195  Q
     |||| |||||| ||||||||||||    
T  18499117 gaacactggttacaagctatgaatg 18499093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 195
Target Start/End: Complemental strand, 26360888 - 26360764
Alignment:
Q  71 ttttcactcatttgatcatttatctccatcacatatatcattttctatttctgtcacaaaaagtactaagcctaaaacttatagagaagcatgtcagtct 170  Q
    ||||||||| ||||||||| | || |||||||||| |   |||||||||||  | |||  ||||||| |||| ||||| |||| ||| ||||||||||||    
T  26360888 ttttcactcctttgatcatctttccccatcacataaagttttttctatttccattacacgaagtactgagcccaaaacctataaagaggcatgtcagtct 26360789  T
Q  171 aaacattggttagaagctatgaatg 195  Q
     |||| |||||| ||||||||||||    
T  26360788 gaacactggttacaagctatgaatg 26360764  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 223
Target Start/End: Original strand, 37192955 - 37193067
Alignment:
Q  111 ttttctatttctgtcacaaaaagtactaagcctaaaacttatagagaagcatgtcagtctaaacattggttagaagctatgaatgttgaattggaagctt 210  Q
    |||||||| ||||||||| || ||||| |||| ||||| || | ||||||  |||||||| ||  ||||||| |||||||| ||  |||||| ||||| |    
T  37192955 ttttctatgtctgtcacacaatgtactgagccaaaaacctacaaagaagctagtcagtctgaatgttggttaaaagctatggattctgaattagaagcat 37193054  T
Q  211 tagctaagaatgg 223  Q
    |||||||||||||    
T  37193055 tagctaagaatgg 37193067  T

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Target: scaffold0779 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0779
Description:

Target: scaffold0779; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 195
Target Start/End: Original strand, 4731 - 4796
Alignment:
Q  130 aaagtactaagcctaaaacttatagagaagcatgtcagtctaaacattggttagaagctatgaatg 195  Q
    |||||||| |||| ||||| |||| ||| |||||||||||| |||| |||||| ||||||||||||    
T  4731 aaagtactgagcccaaaacctataaagaggcatgtcagtctgaacactggttacaagctatgaatg 4796  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 2005586 - 2005690
Alignment:
Q  119 ttctgtcacaaaaagtactaagcctaaaacttatagagaagcatgtcagtctaaacattggttagaagctatgaatgttgaattggaagctttagctaag 218  Q
    |||||||||| |||||||| | || ||||| || | |||||||||||||||| |||||||||||  ||| ||||||  |||||| || ||  |||||||     
T  2005586 ttctgtcacacaaagtactgaacccaaaacctaaaaagaagcatgtcagtctgaacattggttaagagcaatgaataatgaattagaggcactagctaac 2005685  T
Q  219 aatgg 223  Q
    |||||    
T  2005686 aatgg 2005690  T

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