View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13911_low_3 (Length: 532)

Name: NF13911_low_3
Description: NF13911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13911_low_3
NF13911_low_3
[»] chr6 (20 HSPs)
chr6 (6-516)||(2937709-2938219)
chr6 (64-516)||(2927409-2927861)
chr6 (38-516)||(2974256-2974732)
chr6 (38-516)||(2934848-2935327)
chr6 (38-516)||(2996726-2997202)
chr6 (91-516)||(3003188-3003613)
chr6 (38-516)||(2929558-2930036)
chr6 (91-516)||(2952182-2952610)
chr6 (91-516)||(2964758-2965201)
chr6 (38-516)||(2983112-2983591)
chr6 (73-516)||(2658359-2658814)
chr6 (128-464)||(2979192-2979524)
chr6 (38-121)||(2954726-2954807)
chr6 (181-244)||(2954662-2954725)
chr6 (461-516)||(2978495-2978550)
chr6 (354-400)||(2985693-2985739)
chr6 (1-33)||(2952697-2952729)
chr6 (1-30)||(2935352-2935381)
chr6 (1-29)||(2930062-2930090)
chr6 (1-29)||(2965283-2965311)
[»] scaffold0024 (4 HSPs)
scaffold0024 (38-516)||(34595-35071)
scaffold0024 (288-516)||(44532-44760)
scaffold0024 (369-431)||(37981-38043)
scaffold0024 (1-29)||(43650-43678)
[»] chr7 (1 HSPs)
chr7 (38-516)||(3339274-3339750)
[»] chr3 (3 HSPs)
chr3 (73-516)||(49613685-49614128)
chr3 (74-516)||(49618673-49619102)
chr3 (79-198)||(49617650-49617763)


Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 6 - 516
Target Start/End: Complemental strand, 2938219 - 2937709
Alignment:
Q  6 cattgaaacaaacaacgtacattgataaccat--tgaactcaacaatgaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgat 103  Q
    ||||||||||||||||||||||| | ||  ||  ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  2938219 cattgaaacaaacaacgtacattaacaataattatgaactcaacaatgaaagaaatca--ctaggaggcttgtacaacttgcaagacagaacaaactgat 2938122  T
Q  104 tgacgtaaagtgagaacaagtagtaagattccagtaatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagccttcaacttgt 203  Q
    ||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |    
T  2938121 tgaagtaaagtgagaataagtagtaagattccagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtagccttcaacttat 2938022  T
Q  204 gccaaggattcctacaaaaagcattcaattctttgcaaagaatagagtattgagaactgacatcagtatttgtaacatttttccaaagaccattaaacaa 303  Q
    |||||||||| || || |||||||| ||||||||||||||||||||| |||||||||||| ||||| || |  ||||||||| |||||||||||||||||    
T  2938021 gccaaggattactgcagaaagcatttaattctttgcaaagaatagagaattgagaactgatatcagaatatacaacatttttgcaaagaccattaaacaa 2937922  T
Q  304 gatagccacagaatcactgttttcaagccaattttgtagtatattactccgaacaagtatatccacatccgtaccagtatttataaggtaatccaaaaca 403  Q
      |||||||||||||||||| | ||||||||||||  ||||| ||  ||| |||||||||| || ||||| |||| ||||||||||||||||||||||||    
T  2937921 attagccacagaatcactgtctccaagccaattttccagtattttgttccaaacaagtatacccgcatccttaccggtatttataaggtaatccaaaaca 2937822  T
Q  404 gcaacataatcagtaatatatgactcataagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctcaactcttaatt 503  Q
     |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||| ||||||    
T  2937821 acaacataatcagcaatatatgactcatgagggtaatgacactgctccaaagcaaccatattccaaaacaaaatttcggtcgaatcctcaactgttaatt 2937722  T
Q  504 gaggaatttcaag 516  Q
    |||||||||||||    
T  2937721 gaggaatttcaag 2937709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 64 - 516
Target Start/End: Complemental strand, 2927861 - 2927409
Alignment:
Q  64 ctaggaggcttgtacaacttgcaagacagaacaaactgattgacgtaaagtgagaacaagtagtaagattccagtaatggaagcagcagtttgccaagga 163  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  2927861 ctaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaacaagtagtaagattcccgcaatggaagcagcagtttgccaagga 2927762  T
Q  164 gttttgcaataatcacgcctgagagtagccttcaacttgtgccaaggattcctacaaaaagcattcaattctttgcaaagaatagagtattgagaactga 263  Q
    |||||||||||||||||||||||||||||||||||||| || |  |||||| ||||| ||||||| || |||||||||||||||||| ||||||||||||    
T  2927761 gttttgcaataatcacgcctgagagtagccttcaacttatgtcgtggattcttacaataagcatttaagtctttgcaaagaatagagaattgagaactga 2927662  T
Q  264 catcagtatttgtaacatttttccaaagaccattaaacaagatagccacagaatcactgttttcaagccaattttgtagtatattactccgaacaagtat 363  Q
        || |  |||||||||||| | |||||||||||||||| ||||||||||||||| || | |||||  |||||  ||||| |  ||| ||||||||||    
T  2927661 ttgtagaacgtgtaacatttttaccaagaccattaaacaagttagccacagaatcaccgtctccaagcatattttccagtatttccctctgaacaagtat 2927562  T
Q  364 atccacatccgtaccagtatttataaggtaatccaaaacagcaacataatcagtaatatatgactcataagggtaatgacactgctccaaagcaaccata 463  Q
    |||||||||| |||||||||||||||||||||||||||||| |  |||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  2927561 atccacatccttaccagtatttataaggtaatccaaaacagaacgataatcagtaatatatgaatcatcagggtaatgacactgctccaaagcaaccata 2927462  T
Q  464 ttccgaaataaagtttcggtcgaatcctcaactcttaattgaggaatttcaag 516  Q
    ||||| ||||||||||| |||||||||| |||| |||||||||||||||||||    
T  2927461 ttccgtaataaagtttcagtcgaatcctgaacttttaattgaggaatttcaag 2927409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 38 - 516
Target Start/End: Complemental strand, 2974732 - 2974256
Alignment:
Q  38 tgaactcaacaatgaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgacgtaaagtgagaacaagtagtaagattccag 137  Q
    ||||||||||||||||||||||||  |||||| |||||||| |||||||||||||||||||||  ||||  || ||||||||||||||| || |||||||    
T  2974732 tgaactcaacaatgaaagaaatca--ctaggatgcttgtactacttgcaagacagaacaaactctttgaattatagtgagaacaagtagaaaaattccag 2974635  T
Q  138 taatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagccttcaacttgtgccaaggattcctacaaaaagcattcaattcttt 237  Q
     ||||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||||||| | |||||||||||||||||| ||||||||||||||||    
T  2974634 caatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaacctatgccaaggattcctacaataagcattcaattcttt 2974535  T
Q  238 gcaaagaatagagtattgagaactgacatcagtatttgtaacatttttccaaagaccattaaacaagatagccacagaatcactgttttcaagccaattt 337  Q
    ||||||||||||| | |||||||||| || || |||||||| |||||  | |||||||||||| |||||||| ||||||||||||| | |||||||||||    
T  2974534 gcaaagaatagagaaatgagaactgatattagaatttgtaatattttctccaagaccattaaataagatagcaacagaatcactgtctccaagccaattt 2974435  T
Q  338 tgtagtatattactccgaacaagtatatccacatccgtaccagtatttataaggtaatccaaaacagcaacataatcagtaatatatgactcataagggt 437  Q
    || |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |  |  ||||||| |||||||||||| ||||||||    
T  2974434 tgcagtatattgctccgaacaagtatatccacatccgtactagtatttataaggtaatccaaaataaaatgataatcaataatatatgactgataagggt 2974335  T
Q  438 aatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctcaactcttaattgaggaatttcaag 516  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||  ||| | |||| |||||||||||||||||||    
T  2974334 aatgacactgctccaaagcaaccatattccgaaacaaaatttcggtcccatcttgaactgttaattgaggaatttcaag 2974256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 38 - 516
Target Start/End: Complemental strand, 2935327 - 2934848
Alignment:
Q  38 tgaactcaacaatgaaagaaatcaagctaggaggcttgt---acaacttgcaagacagaacaaactgattgacgtaaagtgagaacaagtagtaagattc 134  Q
    ||||||||||||||||||||||||  |||||||||||||   |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  2935327 tgaactcaacaatgaaagaaatca--ctaggaggcttgttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaaaaagtagtaagattc 2935230  T
Q  135 cagtaatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagccttcaacttgtgccaaggattcctacaaaaagcattcaattc 234  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| || ||    
T  2935229 cagcaatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagccttcaacttatgccaaggattcttacaaaaagcatttaagtc 2935130  T
Q  235 tttgcaaagaatagagtattgagaactgacatcagtatttgtaacatttttccaaagaccattaaacaagatagccacagaatcactgttttcaagccaa 334  Q
    |||||| ||||||||| | |||||||||| || ||  | ||||||||||||||||||||||||||||||| |||||||||||||||| |   |||||  |    
T  2935129 tttgcatagaatagagaaatgagaactgatattagattgtgtaacatttttccaaagaccattaaacaagttagccacagaatcactatccgcaagcata 2935030  T
Q  335 ttttgtagtatattactccgaacaagtatatccacatccgtaccagtatttataaggtaatccaaaacagcaacataatcagtaatatatgactcataag 434  Q
    || || ||||| |   ||||||||||||||||  ||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||| |||| ||    
T  2935029 ttatgcagtatttcgttccgaacaagtatatcagcatccgtaccagtatttataaggtaatccatgacagcaacataatcagtgatatatgaatcatcag 2934930  T
Q  435 ggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctcaactcttaattgaggaatttcaag 516  Q
    ||||||||||||||||||||||||||||||| |||||  || |||| |||  ||| |||||  |||||||||||||||||||    
T  2934929 ggtaatgacactgctccaaagcaaccatatttcgaaacgaaatttcagtcctatcgtcaaccgttaattgaggaatttcaag 2934848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 38 - 516
Target Start/End: Original strand, 2996726 - 2997202
Alignment:
Q  38 tgaactcaacaatgaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgacgtaaagtgagaacaagtagtaagattccag 137  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||  |||||||    
T  2996726 tgaactcaacaatgaaagaaatca--ctaggaggcttgtacaacttgcaagacagaacaaactgattgaataaaagtgagaacaagtagtacaattccag 2996823  T
Q  138 taatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagccttcaacttgtgccaaggattcctacaaaaagcattcaattcttt 237  Q
     || ||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || || ||    
T  2996824 caaaggaagcagcagcttgccaaggagtcttgccataatcacgcctgagagtagccttcaacttatgccaaggattcctacaaaaagcatttaagtcctt 2996923  T
Q  238 gcaaagaatagagtattgagaactgacatcagtatttgtaacatttttccaaagaccattaaacaagatagccacagaatcactgttttcaagccaattt 337  Q
    ||||||||||||| |||||||||||| ||  |||| |  ||||||| | |||||||||||||||||| |||||||||||||||||| | |||||||||||    
T  2996924 gcaaagaatagagaattgagaactgatattggtatgtacaacatttatgcaaagaccattaaacaagttagccacagaatcactgtctccaagccaattt 2997023  T
Q  338 tgtagtatattactccgaacaagtatatccacatccgtaccagtatttataaggtaatccaaaacagcaacataatcagtaatatatgactcataagggt 437  Q
    |  ||||| |   |  ||||||||||||| |||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| |||  | || ||    
T  2997024 tccagtatttctttgtgaacaagtatatcaacatccttaccagtgtttataaggtaatccaaaacagaaacataatcagtaatatataacttgttagtgt 2997123  T
Q  438 aatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctcaactcttaattgaggaatttcaag 516  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||  |||||||||  ||||   ||||||||||||    
T  2997124 aatgaaactgctccaaagcaaccatattccgaaataaagcttcggtccgatcctcaacaattaacgaaggaatttcaag 2997202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 91 - 516
Target Start/End: Original strand, 3003188 - 3003613
Alignment:
Q  91 agaacaaactgattgacgtaaagtgagaacaagtagtaagattccagtaatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagta 190  Q
    ||||||||||| |||| ||||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3003188 agaacaaactgtttgaagtaaagtgagagcaaggagtaagattccagcaatggaagcagcagtttgccagggagttttgcaataatcacgcctgagagta 3003287  T
Q  191 gccttcaacttgtgccaaggattcctacaaaaagcattcaattctttgcaaagaatagagtattgagaactgacatcagtatttgtaacatttttccaaa 290  Q
    ||||||||||| ||||| |||||| ||||| ||||||| || ||||||| |||||||||| ||||||||||||    || |  | ||| || ||| | ||    
T  3003288 gccttcaacttatgccatggattcttacaataagcatttaagtctttgccaagaatagagaattgagaactgattgtagaacgtataatatctttgccaa 3003387  T
Q  291 gaccattaaacaagatagccacagaatcactgttttcaagccaattttgtagtatattactccgaacaagtatatccacatccgtaccagtatttataag 390  Q
    |||||||||||||| |||||||||||||||||| | |||||  |||||  ||||| |  ||| |||||||||||||||||||| || |||||||||||||    
T  3003388 gaccattaaacaagttagccacagaatcactgtctccaagcatattttccagtatttcgctctgaacaagtatatccacatccttagcagtatttataag 3003487  T
Q  391 gtaatccaaaacagcaacataatcagtaatatatgactcataagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcc 490  Q
    |||||||||||||| |  |||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3003488 gtaatccaaaacagaacgataatcggtaatatatgaatcatcagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcc 3003587  T
Q  491 tcaactcttaattgaggaatttcaag 516  Q
     |||||  ||||||||||||||||||    
T  3003588 gcaactaataattgaggaatttcaag 3003613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 38 - 516
Target Start/End: Complemental strand, 2930036 - 2929558
Alignment:
Q  38 tgaactcaacaatgaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgacgtaaagtgagaacaagtagtaagattccag 137  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||    
T  2930036 tgaactcaacaataaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaaaaagtagtaagaatccag 2929937  T
Q  138 taatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagccttcaacttgtgccaaggattcctacaaaaagcattcaattcttt 237  Q
     |||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||| | ||||||||||||  |||||||||||| || |||||    
T  2929936 caatggaagcagcagtttgccaaggagtacttcaataatcacgcctgagagtagccttcaacctatgccaaggattctaacaaaaagcatttaagtcttt 2929837  T
Q  238 gcaaagaatagagtattgagaactgacatcagtatttgtaacatttttccaaagaccattaaacaagatagccacagaatcactgttttcaagccaattt 337  Q
    ||| ||||||||| | |||| ||||| || || || | ||| || ||| |||| ||||||||||| | |||||||||||| | ||| | ||| |||||||    
T  2929836 gcatagaatagagaaatgaggactgatattagaatgtataatatatttgcaaaaaccattaaacatgttagccacagaatgattgtctccaaaccaattt 2929737  T
Q  338 tgtagtatattactccgaacaagtatatccacatccgtaccagtatttataaggtaatccaaaacagcaacataatcagtaatatatgactcataagggt 437  Q
    |  ||||| |   || ||| |||||||||  | ||| ||||||||||||||||  |||||| || || ||||||||||  |||||||||||||| |||||    
T  2929736 tccagtatttctttctgaataagtatatcggcgtccttaccagtatttataagaaaatccataatagtaacataatcaagaatatatgactcatgagggt 2929637  T
Q  438 aatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctcaactcttaattgaggaatttcaag 516  Q
    ||||| ||||||||||||||| |||||||| ||||||||||||||||  |||  ||||| |||||||||||||||||||    
T  2929636 aatgaaactgctccaaagcaatcatattccaaaataaagtttcggtcccatctgcaactgttaattgaggaatttcaag 2929558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 91 - 516
Target Start/End: Complemental strand, 2952610 - 2952182
Alignment:
Q  91 agaacaaactgattgacgtaaagtgagaacaagtagtaagattccagtaatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagta 190  Q
    ||||||||||| |||| ||||||||||| |||| |||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||     
T  2952610 agaacaaactgtttgaagtaaagtgagagcaaggagtacgattccagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtg 2952511  T
Q  191 gccttcaacttgtgccaaggattcctacaaaaagcattcaattctttgcaaagaatagagtattgagaactgacatcagtatttgtaacatttttccaaa 290  Q
    || |||||||| | ||||||||| |||||||| ||||| | |||||||| || ||||||| |||||||||||| || || || |  ||||||||| ||||    
T  2952510 gctttcaacttattccaaggattactacaaaatgcatttatttctttgccaataatagagaattgagaactgatattagaatatacaacatttttgcaaa 2952411  T
Q  291 gaccattaaacaagatagccacagaatcactgttttc---aagccaattttgtagtatattactccgaacaagtatatccacatccgtaccagtatttat 387  Q
     ||||||||||  | ||||||||||||||||  ||||   ||||  ||| | ||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  2952410 taccattaaacctgttagccacagaatcactactttctccaagcatattatctagtatatccctccgaacaagtatatccacatcggtaccagtatttat 2952311  T
Q  388 aaggtaatccaaaacagcaacataatcagtaatatatgactcataagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaa 487  Q
    || ||||||||||||| |||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2952310 aatgtaatccaaaacaacaacataatcagcaatatatgactcctcagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggttgaa 2952211  T
Q  488 tcctcaactcttaattgaggaatttcaag 516  Q
    |||| |||| |||||||||||||||||||    
T  2952210 tcctgaacttttaattgaggaatttcaag 2952182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 91 - 516
Target Start/End: Complemental strand, 2965201 - 2964758
Alignment:
Q  91 agaacaaactgattgacgtaaagtgagaacaagtagtaagattccagtaatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagta 190  Q
    ||||||||||| ||||  ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||  |||| ||||||||| | |||||     
T  2965201 agaacaaactgtttgaattaaagtgagaacaagtagtaagattccagcaaaggaagcagcagcttgccaaggagtactgcagtaatcacgcatcagagtg 2965102  T
Q  191 gccttcaactt------------------gtgccaaggattcctacaaaaagcattcaattctttgcaaagaatagagtattgagaactgacatcagtat 272  Q
    | |||||||||                  | |||||||||||| ||||||||||||||| |||||||||||||||||| |||||  ||||| || || ||    
T  2965101 gacttcaacttcaacgtcaacattaactggcgccaaggattcccacaaaaagcattcaaatctttgcaaagaatagagaattgaagactgatattagaat 2965002  T
Q  273 ttgtaacatttttccaaagaccattaaacaagatagccacagaatcactgttttcaagccaattttgtagtatattactccgaacaagtatatccacatc 372  Q
     | |||||| |||  ||||||||||||||||| |||||||||||||||| | | |||||  |||||  ||||| ||  || |||||||||||||||||||    
T  2965001 gtataacatatttggaaagaccattaaacaagttagccacagaatcactatctccaagcatattttccagtattttgttctgaacaagtatatccacatc 2964902  T
Q  373 cgtaccagtatttataaggtaatccaaaacagcaacataatcagtaatatatgactcataagggtaatgacactgctccaaagcaaccatattccgaaat 472  Q
    | | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  2964901 cttgccagtatttataaggtaatccaaaacagcaacatagtcagtaatatatgactcataagggtaacgacactgctccaaagcaaccatattccgaaac 2964802  T
Q  473 aaagtttcggtcgaatcctcaactcttaattgaggaatttcaag 516  Q
    | | ||||||||  ||| | | || |||||||||||||||||||    
T  2964801 ataatttcggtcccatcgtgagctattaattgaggaatttcaag 2964758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 38 - 516
Target Start/End: Complemental strand, 2983591 - 2983112
Alignment:
Q  38 tgaactcaacaatgaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgacgtaaagtgagaacaagtagtaagattccag 137  Q
    |||||||||||||||||||||| |  |||||| |||||||| | |||||||||||||||||||| ||||  || |||||||||||||||||||| |||||    
T  2983591 tgaactcaacaatgaaagaaatga--ctaggatgcttgtactatttgcaagacagaacaaactgtttgaattatagtgagaacaagtagtaagactccag 2983494  T
Q  138 taatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagccttcaacttgtgccaaggattcctacaaaaagcattcaattcttt 237  Q
     || |||||||||| ||| ||||||||| |||| |||||||||||||||||| ||||||||||| | || ||||||  |||||||||||| |||||| ||    
T  2983493 caacggaagcagcaattttccaaggagtattgccataatcacgcctgagagtggccttcaacttattcctaggattattacaaaaagcatccaattcatt 2983394  T
Q  238 gcaaagaatagagtattgagaactgacatcagtatttgtaacatttttccaaagaccattaaacaagatagccacagaatcactgttttcaagccaattt 337  Q
    | ||||| |   | | ||| ||||||  | ||  |||  ||||||||| ||||||||||||||||||||||||| ||| | || || | ||||| | |||    
T  2983393 ggaaagacttacgaaatgataactgagtttagattttacaacatttttgcaaagaccattaaacaagatagccatagattgaccgtctccaagcaagttt 2983294  T
Q  338 tgtagtatattactccgaacaagtatatccacatccgtaccagtatttataaggtaatccaaaacagcaacataatcagtaatatatgactcataagggt 437  Q
    | |||||| |   || ||| ||||| |||||||||| ||||| |||||||||||||||||||||||  ||||||||||  |||||||||||||| |||||    
T  2983293 tctagtatttgcttctgaataagtacatccacatccttaccattatttataaggtaatccaaaacaagaacataatcaagaatatatgactcatgagggt 2983194  T
Q  438 aatgacactgctccaaagcaaccatattccgaaataaagtttcggtcg---aatcctcaactcttaattgaggaatttcaag 516  Q
    ||||||| ||||||||||||| |||||||||||| ||| |||||||||    ||| | |||| |||||||||||||||||||    
T  2983193 aatgacaatgctccaaagcaatcatattccgaaacaaaatttcggtcgtccgatcatgaactattaattgaggaatttcaag 2983112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 73 - 516
Target Start/End: Original strand, 2658359 - 2658814
Alignment:
Q  73 ttgtacaacttgcaagacagaacaaactgattgacgtaaagtgagaacaagtagtaagattccagtaatggaagcagcagtttgccaaggagttttgcaa 172  Q
    |||||| ||||| |||||||||||||||| ||||  || |||||||| ||||||||||||||||| || ||||||| ||| || |||||||||  |||||    
T  2658359 ttgtactacttgaaagacagaacaaactgtttgaattatagtgagaataagtagtaagattccagcaaaggaagcaccagctttccaaggagtactgcaa 2658458  T
Q  173 taatcacgcctgagagtagc------------cttcaacttgtgccaaggattcctacaaaaagcattcaattctttgcaaagaatagagtattgagaac 260  Q
    ||||||||||| |||||  |            ||| |||||  |||||||||||||||||||| | || || ||||  |||||||||| | | |||| ||    
T  2658459 taatcacgcctcagagtgccaatcaatgagtacttaaacttaggccaaggattcctacaaaaatcttttaagtcttcacaaagaatagtgaaatgaggac 2658558  T
Q  261 tgacatcagtatttgtaacatttttccaaagaccattaaacaagatagccacagaatcactgttttcaagccaattttgtagtatattactccgaacaag 360  Q
    ||  || |  ||  ||||||||||| ||||||||| |||||||| |||||||||||||||||| | ||||||||||||  ||||| ||  |  |||||||    
T  2658559 tgctattacaatgagtaacatttttgcaaagaccagtaaacaagttagccacagaatcactgtctccaagccaattttccagtattttgtttggaacaag 2658658  T
Q  361 tatatccacatccgtaccagtatttataaggtaatccaaaacagcaacataatcagtaatatatgactcataagggtaatgacactgctccaaagcaacc 460  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2658659 tatatccacatccttaccagtatttataaggtaatccaaaacagcaacataatcagtaatatatgactcataagggtaatgacattgctccaaagcaacc 2658758  T
Q  461 atattccgaaataaagtttcggtcgaatcctcaactcttaattgaggaatttcaag 516  Q
    ||||| ||||| ||| |||| |||  ||| |||||  |||||||||||||||||||    
T  2658759 atatttcgaaacaaaatttcagtcctatcgtcaaccgttaattgaggaatttcaag 2658814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 128 - 464
Target Start/End: Complemental strand, 2979524 - 2979192
Alignment:
Q  128 aagattccagtaatggaagcagcagtttgccaagga--gttttgcaataatcacgcctgagagtagccttcaacttg------tgccaaggattcctaca 219  Q
    |||||||||| || |||||||||| |||||| ||||  || ||||||  |||| ||||||||| ||||||||| ||       ||||||||||| ||| |    
T  2979524 aagattccagcaacggaagcagcaatttgcctaggatcgtattgcaacgatcatgcctgagagaagccttcaagttcaactcatgccaaggattactata 2979425  T
Q  220 aaaagcattcaattctttgcaaagaatagagtattgagaactgacatcagtatttgtaacatttttccaaagaccattaaacaagatagccacagaatca 319  Q
    |||| |||| || |||||||||||||||||| | |||||||||| ||         |||||||||  |||||| ||||||||||  ||||  |||||| |    
T  2979424 aaaatcatttaaatctttgcaaagaatagagaaatgagaactgatat---------taacattttcgcaaagatcattaaacaatttagcagcagaatga 2979334  T
Q  320 ctgttttcaagccaattttgtagtatattactccgaacaagtatatccacatccgtaccagtatttataaggtaatccaaaacagcaacataatcagtaa 419  Q
    |||| | ||||| ||||||  ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| || |   |||||||||||||||    
T  2979333 ctgtctccaagcaaattttccagtattttgctccgaacaagtatatccacatccgtaccggtatttataaggtaatcgaaga---caacataatcagtaa 2979237  T
Q  420 tatatgactcataagggtaatgacactgctccaaagcaaccatat 464  Q
    |||||||||||| |||||||| |||||||||||||||||||||||    
T  2979236 tatatgactcatgagggtaataacactgctccaaagcaaccatat 2979192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 2954807 - 2954726
Alignment:
Q  38 tgaactcaacaatgaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgacgtaaagtgagaaca 121  Q
    ||||||||||| ||||||||||||  ||||||||||||||| ||||||||||||||||||| ||||||| ||||||||| ||||    
T  2954807 tgaactcaacattgaaagaaatca--ctaggaggcttgtactacttgcaagacagaacaaattgattgaagtaaagtgataaca 2954726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 2954725 - 2954662
Alignment:
Q  181 cctgagagtagccttcaacttgtgccaaggattcctacaaaaagcattcaattctttgcaaaga 244  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||    
T  2954725 cctgagagtagccttcaacttacgccaaggattcctacaaaaagcatttaattctttgcaaaga 2954662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 461 - 516
Target Start/End: Complemental strand, 2978550 - 2978495
Alignment:
Q  461 atattccgaaataaagtttcggtcgaatcctcaactcttaattgaggaatttcaag 516  Q
    |||| |||||| ||| ||||||||  ||||||||||||||||||||||||||||||    
T  2978550 atataccgaaacaaaatttcggtcccatcctcaactcttaattgaggaatttcaag 2978495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 2985739 - 2985693
Alignment:
Q  354 gaacaagtatatccacatccgtaccagtatttataaggtaatccaaa 400  Q
    |||||||||||||| ||||| ||| ||||||||||||||||||||||    
T  2985739 gaacaagtatatccgcatccttactagtatttataaggtaatccaaa 2985693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2952729 - 2952697
Alignment:
Q  1 gaaaccattgaaacaaacaacgtacattgataa 33  Q
    |||||||||||||||||||||||||||||||||    
T  2952729 gaaaccattgaaacaaacaacgtacattgataa 2952697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 2935381 - 2935352
Alignment:
Q  1 gaaaccattgaaacaaacaacgtacattga 30  Q
    ||||||||||||||||||||||||||||||    
T  2935381 gaaaccattgaaacaaacaacgtacattga 2935352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 2930090 - 2930062
Alignment:
Q  1 gaaaccattgaaacaaacaacgtacattg 29  Q
    |||||||||||||||||||||||||||||    
T  2930090 gaaaccattgaaacaaacaacgtacattg 2930062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 2965311 - 2965283
Alignment:
Q  1 gaaaccattgaaacaaacaacgtacattg 29  Q
    |||||||||||||||||||||||||||||    
T  2965311 gaaaccattgaaacaaacaacgtacattg 2965283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 38 - 516
Target Start/End: Original strand, 34595 - 35071
Alignment:
Q  38 tgaactcaacaatgaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgacgtaaagtgagaacaagtagtaagattccag 137  Q
    ||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||    
T  34595 tgaactcaacaatgaaagaaatca--ctaggaggcttgtactacttgcaagacagaacaaactgattgaagcaaagtgagaacaagtagtaaaattccag 34692  T
Q  138 taatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagccttcaacttgtgccaaggattcctacaaaaagcattcaattcttt 237  Q
     || ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| | | ||||||||| |||||||| ||||| || | |||    
T  34693 caacggaagcagcagtttgccaaggagttttgccataatcacgcctgagagaagccttcaacctattccaaggattactacaaaatgcatttaagttttt 34792  T
Q  238 gcaaagaatagagtattgagaactgacatcagtatttgtaacatttttccaaagaccattaaacaagatagccacagaatcactgttttcaagccaattt 337  Q
    ||||||||||||| | |||||||||| || |  || | |||||||||| ||||||| |||||||||| |||||||||||||||||| | ||||| ||||     
T  34793 gcaaagaatagagaaatgagaactgatattatgatgtataacatttttgcaaagacgattaaacaagttagccacagaatcactgtctccaagcaaatta 34892  T
Q  338 tgtagtatattactccgaacaagtatatccacatccgtaccagtatttataaggtaatccaaaacagcaacataatcagtaatatatgactcataagggt 437  Q
       ||||| |   ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  34893 gtcagtatttctttccgaacaagtatatccgcatccttaccagtatttataaggaaatccaaaacaacaacataatcagtaatatatgactcataagggt 34992  T
Q  438 aatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctcaactcttaattgaggaatttcaag 516  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||  ||||||||||  |||| |||||||||||||    
T  34993 aatgacactgctccaaagcaaccatattccgaaacaaaatttcggtcccatcctcaacttctaatcgaggaatttcaag 35071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 288 - 516
Target Start/End: Original strand, 44532 - 44760
Alignment:
Q  288 aaagaccattaaacaagatagccacagaatcactgttttcaagccaattttgtagtatattactccgaacaagtatatccacatccgtaccagtatttat 387  Q
    ||||| ||||||||||  |||||||| ||| ||||| | ||||| ||||||  ||||| || ||||||||| |||||||  ||||| |||||||||||||    
T  44532 aaagatcattaaacaaattagccacataatgactgtctccaagcaaattttccagtattttgctccgaacatgtatatctgcatccttaccagtatttat 44631  T
Q  388 aaggtaatccaaaacagcaacataatcagtaatatatgactcataagggtaatgacactgctccaaagcaaccatattccgaaataaagtttc-ggtcga 486  Q
    |||||||||||||| ||||||||||| | |||||||||| |||| |||||||||| ||| ||||| |||||||||||| | ||| ||| |||| ||| |     
T  44632 aaggtaatccaaaatagcaacataattaataatatatgattcattagggtaatgatactactccatagcaaccatatttcaaaacaaaatttcaggttg- 44730  T
Q  487 atcctcaactcttaattgaggaatttcaag 516  Q
    ||| ||| ||||||||||||||||||||||    
T  44731 atcatcagctcttaattgaggaatttcaag 44760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 431
Target Start/End: Complemental strand, 38043 - 37981
Alignment:
Q  369 catccgtaccagtatttataaggtaatccaaaacagcaacataatcagtaatatatgactcat 431  Q
    ||||| |||||||||||||||||| ||  |||||| |||| |||||| |||||||||||||||    
T  38043 catccttaccagtatttataaggtgatataaaacaacaacctaatcaataatatatgactcat 37981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 43650 - 43678
Alignment:
Q  1 gaaaccattgaaacaaacaacgtacattg 29  Q
    |||||||||||||||||||||||||||||    
T  43650 gaaaccattgaaacaaacaacgtacattg 43678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 38 - 516
Target Start/End: Complemental strand, 3339750 - 3339274
Alignment:
Q  38 tgaactcaacaatgaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgacgtaaagtgagaacaagtagtaagattccag 137  Q
    |||||||||||| |||||||||||  ||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||    
T  3339750 tgaactcaacaaagaaagaaatca--ctaggaggcctgtactacttgcaagacagaacaaactgattgaagtaaagtgagaacaagtagtacaattccag 3339653  T
Q  138 taatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagccttcaacttgtgccaaggattcctacaaaaagcattcaattcttt 237  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | |||||||||||| |||||||| |||| || |||||    
T  3339652 caatggaagcagcagtttgccaaggagtattgcaataatcacgcctgagagtggccttcaacctatgccaaggattcttacaaaaatcatttaagtcttt 3339553  T
Q  238 gcaaagaatagagtattgagaactgacatcagtatttgtaacatttttccaaagaccattaaacaagatagccacagaatcactgttttcaagccaattt 337  Q
    || |||| ||| | | |||||||| |||  || ||   |||||||||| |||||||||||||||||  |||||||||||||||||| | |||||||||||    
T  3339552 gccaagagtagggaaatgagaacttacactagaatgcataacatttttgcaaagaccattaaacaatttagccacagaatcactgtctgcaagccaattt 3339453  T
Q  338 tgtagtatattactccgaacaagtatatccacatccgtaccagtatttataaggtaatccaaaacagcaacataatcagtaatatatgactcataagggt 437  Q
    | |||||| |  |||  ||||||||||||||||||| ||| ||||||||||||| ||||||||| ||||||||||||| ||||||||||||||| |||||    
T  3339452 tctagtatttcgctcttaacaagtatatccacatccatactagtatttataaggaaatccaaaaaagcaacataatcaataatatatgactcatcagggt 3339353  T
Q  438 aatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctcaactcttaattgaggaatttcaag 516  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||  ||| |||||| |||||||||||||||||||    
T  3339352 aatgacactgctccaaagcaaccatattccgaaacaaaatttcggtcccatcgtcaactgttaattgaggaatttcaag 3339274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 73 - 516
Target Start/End: Complemental strand, 49614128 - 49613685
Alignment:
Q  73 ttgtacaacttgcaagacagaacaaactgattgacgtaaagtgagaacaagtagtaagattccagtaatggaagcagcagtttgccaaggagttttgcaa 172  Q
    ||||||||||||||| || | ||||||||||||| |||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||| | ||||||    
T  49614128 ttgtacaacttgcaacactgcacaaactgattgaagtaaagagagaataagtagtaaaattccagcaatggaagcagcagtttgccaaggactgttgcaa 49614029  T
Q  173 taatcacgcctgagagtagccttcaacttgtgccaaggattcctacaaaaagcattcaattctttgcaaagaatagagtattgagaactgacatcagtat 272  Q
    |||||||| |||||||| ||||||||  | ||||||||||    ||||||| ||||||| ||||  || ||||||||||| |||||||||| ||    ||    
T  49614028 taatcacgtctgagagtcgccttcaatctatgccaaggatcatgacaaaaaccattcaagtcttcacatagaatagagtactgagaactgaaatacaaat 49613929  T
Q  273 ttgtaacatttttccaaagaccattaaacaagatagccacagaatcactgttttcaagccaattttgtagtatattactccgaacaagtatatccacatc 372  Q
     |||||||||||||||||||| |||||||||| |||||||||||||||| |   ||||||||||    ||||| ||  || |||||||||||||||||||    
T  49613928 gtgtaacatttttccaaagactattaaacaagttagccacagaatcactatccccaagccaattcaccagtattttcttctgaacaagtatatccacatc 49613829  T
Q  373 cgtaccagtatttataaggtaatccaaaacagcaacataatcagtaatatatgactcataagggtaatgacactgctccaaagcaaccatattccgaaat 472  Q
    | | |||||||| |||||| |||||||||||||||||||||| ||||| || ||||||  |||||| ||||| ||||||||||||||||||||||||||     
T  49613828 cttgccagtattaataaggaaatccaaaacagcaacataatccgtaatgtaggactcactagggtagtgacattgctccaaagcaaccatattccgaaac 49613729  T
Q  473 aaagtttcggtcgaatcctcaactcttaattgaggaatttcaag 516  Q
    ||| |||| ||| ||||||||||| | |||||||||||||||||    
T  49613728 aaaatttcagtccaatcctcaactttcaattgaggaatttcaag 49613685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 74 - 516
Target Start/End: Complemental strand, 49619102 - 49618673
Alignment:
Q  74 tgtacaacttgcaagacagaacaaactgattgacgtaaagtgagaacaagtagtaagattccagtaatggaagcagcagtttgccaaggagttttgcaat 173  Q
    |||||||||||||||| |||||||||||||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||  ||| ||    
T  49619102 tgtacaacttgcaagatagaacaaactgattgaagtaaagagagaacaagtagtaaaattccagcaatggaagcagcagtttgccaaggagtactgccat 49619003  T
Q  174 aatcacgcctgagagtagccttcaacttgtgccaaggattcctacaaaaagcattcaattctttgcaaagaatagagtattgagaactgacatcagtatt 273  Q
    ||||||||||||||||||||||||  || |||||||||||  |||||||| || |||| |||||   ||||| | || | |||||||||| ||   |||     
T  49619002 aatcacgcctgagagtagccttcagtttatgccaaggattattacaaaaacca-tcaagtctttaggaagaagacagaaatgagaactgaaatttatatg 49618904  T
Q  274 tgtaacatttttccaaagaccattaaacaagatagccacagaatcactgttttcaagccaattttgtagtatattactccgaacaagtatatccacatcc 373  Q
    || |||||||||||||||||||||| ||||| | |||||||||||||||| | |||||  ||| |   ||||    ||| |||||||||||||| |||||    
T  49618903 tgaaacatttttccaaagaccattatacaagtttgccacagaatcactgtctgcaagcatattatcctgtattcctctctgaacaagtatatccgcatcc 49618804  T
Q  374 gtaccagtatttataaggtaatccaaaacagcaacataatcagtaatatatgactcataagggtaatgacactgctccaaagcaaccatattccgaaata 473  Q
     ||||  |||||||||||||||||||||||| || |||||||  |||||| || |||| |||||||||           ||||||||||||||| |||||    
T  49618803 ctaccgatatttataaggtaatccaaaacagaaatataatcataaatataggaatcatgagggtaatg-----------aagcaaccatattcc-aaata 49618716  T
Q  474 aagtttcggtcgaatcctcaactcttaattgaggaatttcaag 516  Q
    ||||| |||||   |||||||||||||||||||||||||||||    
T  49618715 aagttacggtccggtcctcaactcttaattgaggaatttcaag 49618673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 198
Target Start/End: Complemental strand, 49617763 - 49617650
Alignment:
Q  79 aacttgcaagacagaacaaactgattgacgtaaagtgagaacaagtagtaagattccagtaatggaagcagcagtttgccaaggagttttgcaataatca 178  Q
    |||| ||||||||||| ||||||||||| |||||  ||||| ||||||||| ||||||| ||  |||||||| | |||||||  ||   ||||| |||||    
T  49617763 aactcgcaagacagaataaactgattgaagtaaa--gagaataagtagtaaaattccagcaacagaagcagctg-ttgccaactag---tgcaaaaatca 49617670  T
Q  179 cgcctgagagtagccttcaa 198  Q
     |||||||||||||||||||    
T  49617669 tgcctgagagtagccttcaa 49617650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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