View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13911_low_4 (Length: 480)
Name: NF13911_low_4
Description: NF13911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13911_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 23 - 472
Target Start/End: Complemental strand, 27127709 - 27127260
Alignment:
| Q |
23 |
atcctgagccacaaaggaggctcgacattgcaatttcaattgcttcttttatatcattttatatttatcatctaatttaacgttaannnnnnnnnaatgt |
122 |
Q |
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| T |
27127709 |
atcctgagccacaaaggaggctcgacattgcaatttcaattgcttcttgtatatcattttatatttatcatctaatttaacattaatttttttttaacgt |
27127610 |
T |
|
| Q |
123 |
aagtttattaaaaactttagataccgtcaactaatttatttattatcaaaactaagtttatccgctatcagataaattatttgtcgtcaactaatgtcta |
222 |
Q |
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| T |
27127609 |
aagtttattaaaaactttagataccgtcaactgatttatttattatcaaaactaagtttattcgctatcagataaattatttgtcgtcaactaatgtcta |
27127510 |
T |
|
| Q |
223 |
aattatgttaatgttgcttatatagtnnnnnnnnttaagttaatatgattattcgatgcatttgatcaacgctattctataattaatcatagaagatatc |
322 |
Q |
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| T |
27127509 |
aattattttaatgttgcttatatagtaaaaaaaattaagttaatatgattattcgatgcatttgatcaacgctattctataattaatcatagaagatatt |
27127410 |
T |
|
| Q |
323 |
gtacctttcgcagttcatatcgagcctgaaattgaaggggaggagaattccacaaccttcgggaatcgatgcaaaagcggcagcattgatatgagggagt |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27127409 |
gtacctttcgcagttcatatcgagcctgaaattgaaggggaggagaattccacaaccttccggaatcgatgcaaaagcggcagcattgatatgagggagt |
27127310 |
T |
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| Q |
423 |
tttttagcagcatcttgaatgcaatggcaagcagcaacggtatgatgatg |
472 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27127309 |
tttttagcagcatcttgaatgcaatggcaagcagcaatggtatgatgatg |
27127260 |
T |
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