View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13911_low_7 (Length: 382)
Name: NF13911_low_7
Description: NF13911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13911_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 16641137 - 16640781
Alignment:
| Q |
18 |
tccctaagcttgctcaattagtacaaacatttgaggagaaagtgaatgtttcttccaaaactgaggtattacttttacgcttgtgcgtgcaatgttatga |
117 |
Q |
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| T |
16641137 |
tccctaagcttgctcaattagtacaaacatttgaggagaaagtgaatgtttcttccaaaactgaggtattacttttacgcttgtgcgtgcaatgttatga |
16641038 |
T |
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| Q |
118 |
ctgtcttattgcaaaaattttatcgttcttgtagatttttcagttcatggactttgcttgttttcgtaagcatatattcaaagaatcaacttttaactta |
217 |
Q |
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| T |
16641037 |
ctgtctaattgcaaaaattttatcgttcttgtagatttttcagttcatggactttgcttgtttgcgtaagcatatattcaaagaatcaacttttaactta |
16640938 |
T |
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| Q |
218 |
cnnnnnnntcactttctaaaaatttcaaagtgtgtcttgtttaagcttttgaaaagaattggatttctgattttattgagaagctactttgagtagtttt |
317 |
Q |
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| T |
16640937 |
caaaaaaatcactttctaaaaatttcaaagtgtgtcttgtttaagcttttgaaaagaattggatttctgattatattgagaagctactttgagtagtttt |
16640838 |
T |
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| Q |
318 |
taaaacaaaattgacgctataactacctctgtcaatacaaagtgttattcagaattat |
375 |
Q |
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| T |
16640837 |
taaaacaaaattg-cgctataactacctttgtcaatacaaagtgttattcataattat |
16640781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 14630413 - 14630056
Alignment:
| Q |
18 |
tccctaagcttgctcaattagtacaaacatttgaggagaaagtgaatgtttcttccaaaactgaggtattacttttacgcttgtgcgtgcaatgttatga |
117 |
Q |
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| T |
14630413 |
tccctaagcttgttcaattagtacagacatttgaggagaagctgaatgtttcttccaaaactgaggtattacttttatgcttgtgtgtgcaatgttgtga |
14630314 |
T |
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| Q |
118 |
ctgtcttattgcaaaaattttatcgttcttgtagatttttcagttcatggactttgcttgttttcgtaagcatatattcaaagaatcaacttttaactta |
217 |
Q |
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|| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||| |||| |
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| T |
14630313 |
ctttcttattgcaaaaaatttaacgttcttgtagatttttcagttcatggactttgcttgattgtgaaagcatatattcaaagaatcaacttttatctta |
14630214 |
T |
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| Q |
218 |
cnnnnnnntcactttctaaaaatttcaaagtgtgtcttgtttaagcttttgaaaagaattggatttctgattttattgagaagctactttgagtagtttt |
317 |
Q |
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| T |
14630213 |
caaaaaaatcactttctaaaaatttcaaagtgtgttttgtttaagcttttgaaaagaattagatttctgattctattgagaagctactttcagtagtttt |
14630114 |
T |
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| Q |
318 |
taaaacaaaattgacgctataactacctctgtcaatacaaagtgttattcagaattat |
375 |
Q |
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| T |
14630113 |
taaaacaaaattgacgctataactacctttgtcaatacaaagtgttattcataattat |
14630056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 16632233 - 16632097
Alignment:
| Q |
18 |
tccctaagcttgctcaattagtacaaacatttgaggagaaagtgaatgtttcttccaaaactgaggtattacttttacgcttgtgcgtgcaatgttatga |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16632233 |
tccctaagcttgttcaattagtacaaacatttgaggagaagctgaatgtttcttccaaaactgaggtattacttttacgcttgtgtgtgcaatgttatga |
16632134 |
T |
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| Q |
118 |
ctgtcttattgcaaaaattttatcgttcttgtagatt |
154 |
Q |
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| T |
16632133 |
ctttcttattgcaaaagttttatcgttcttgtagatt |
16632097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 24 - 363
Target Start/End: Complemental strand, 16619857 - 16619532
Alignment:
| Q |
24 |
agcttgctcaattagtacaaacatttgaggagaaagtgaatgtttcttccaaaactgaggtattacttttacgcttgtgcgtgcaatgttatgactgtct |
123 |
Q |
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| T |
16619857 |
agcttgctcgattagcagaaacacttgaggagaaagtgaatgcttctgccaaaactgaggtatcacttttaagctt--------------atgattttca |
16619772 |
T |
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| Q |
124 |
tattgcaaaaat--tttatcgttcttgtagatttttcagttcatggactttgcttgttttcgtaagcatatattcaaagaatcaacttttaacttacnnn |
221 |
Q |
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| T |
16619771 |
tattgcaaatacactttatccttcatgtggatttt-cagttcagggactttgcttgtctctgcaagtatatattcaaagaatcgacttttattttacaaa |
16619673 |
T |
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| Q |
222 |
nnnntcactttctaaaaatttcaaagtgtgtcttgtttaagcttttgaaaagaattggatttctgattttattgagaagctactttgagtagtttttaaa |
321 |
Q |
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| T |
16619672 |
aaa-tctctttctaaagaattcaaagcgtgtcaggtttaagcttttgaaaagaattagatttctgattatattgagaagctactttgagtagtttttaaa |
16619574 |
T |
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| Q |
322 |
acaaaattgacgctataactacctctgtcaatacaaagtgtt |
363 |
Q |
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| T |
16619573 |
acaaaattgatgctataactaccttcgtcgatacaaagtgtt |
16619532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 286 - 374
Target Start/End: Complemental strand, 16632100 - 16632012
Alignment:
| Q |
286 |
gattttattgagaagctactttgagtagtttttaaaacaaaattgacgctataactacctctgtcaatacaaagtgttattcagaatta |
374 |
Q |
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| T |
16632100 |
gattatattgagaagctactttgagtagtttttaaaacaaaattgacgctataactacctttgtcaatacaaagtggtattcataatta |
16632012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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