View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13912_high_14 (Length: 462)
Name: NF13912_high_14
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13912_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 7876635 - 7876191
Alignment:
| Q |
1 |
aacgtgtttcttattttagacttgacactgtacgctttcatgtggtgaaatttattgctagtatcaatatgtgacattatggctgatacttgtcttttct |
100 |
Q |
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| T |
7876635 |
aacgtgtttcttattttagacttaacactgtacgctttcatgtggtgaa-tttattgctagtatcaatatgtgacattatggccgatacttgtcttttct |
7876537 |
T |
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| Q |
101 |
attcaaatggagaacacttaattgtctatatccaatgcatcctttatatataattgagattttgcacatatataccattagtatttgttcactaaaatca |
200 |
Q |
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| T |
7876536 |
attcaaatggagaacacttgattgtccatatccaatgcatcctttatatataattgagattttgcacatatataccattagtatttgttcactaaaatca |
7876437 |
T |
|
| Q |
201 |
tatggtgggtgttttatgtagttgctaatgcatcttatattgggcttacattttataggagcaaaagtgaagatatcaataacatagttcaaggtttgat |
300 |
Q |
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| T |
7876436 |
tatggtgg-tgttttatgtagttgctaatgcatcttatattgggcttacattttataggagcaaaagtgaagatatcaataacatagttcaaggtttgat |
7876338 |
T |
|
| Q |
301 |
tcgtctgatagaagacaaatttgtttccgttgctaaacacccagtggaagtagaagcttgaatgcaagatgtcattcaactattgaacgcggaacaacca |
400 |
Q |
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| T |
7876337 |
tcgtctgatagaagacaaatttgtttccgttgctaaacacccagtgggagtagaagctcggatgcaagatgttattcaactattgaacgcggaacaacca |
7876238 |
T |
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| Q |
401 |
gaaaataccataatcataggggtatgggagacaaacggagttggtaa |
447 |
Q |
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| T |
7876237 |
gaaaataccataatcataggggtatgggggacaaatggggttggtaa |
7876191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 428
Target Start/End: Complemental strand, 7891080 - 7890982
Alignment:
| Q |
330 |
ttgctaaacacccagtggaagtagaagcttgaatgcaagatgtcattcaactattgaacgcggaacaaccagaaaataccataatcataggggtatggg |
428 |
Q |
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||||| |||| || |||| |||||||||| | || ||||||| ||||||||||||||| |||||| ||||||||||||| || ||||| |||||| |
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| T |
7891080 |
ttgctgaacatccggtgggagtagaagctcgggtgaaagatgtgattcaactattgaacagcgaacaagcagaaaataccatgattgtagggatatggg |
7890982 |
T |
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