View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13912_high_43 (Length: 237)
Name: NF13912_high_43
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13912_high_43 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 29741055 - 29740835
Alignment:
| Q |
1 |
atggtagacacctcttcgtcatggcacggatgatttttgttggacataaacggtaagaatcctctaatttttgtccttgatcaatggcgagtttaagacc |
100 |
Q |
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| T |
29741055 |
atggtagacacctcttcgtcatggcacggatgatttttgttggacataaacggtaagaatcctctaatttttgtccttgatcaatggcgagtttaagacc |
29740956 |
T |
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| Q |
101 |
taagttaaggccctaaaactcaacaaaaatagcagtagaatcatttgatagagttggcaaaataatcacggattaaaccactacaagtcgatgagtgagt |
200 |
Q |
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| T |
29740955 |
taagttaaggccctaaaactcaacaaaaatagcagtagaatcatttgatagagttagcaaaataatcacggattaaaccactacaagtcgatgagtgagt |
29740856 |
T |
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| Q |
201 |
agtggtattatgagagtcatc |
221 |
Q |
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| T |
29740855 |
agtggtattatgagagtcatc |
29740835 |
T |
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Back To:
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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 17814398 - 17814477
Alignment:
| Q |
139 |
aatcatttgatagagttggcaaaataatcacggattaaaccactacaagtcgatgagtgagtagtggtattatgagagtc |
218 |
Q |
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| T |
17814398 |
aatcctttgataaagttgccaaaaaaatcacgaattaagccattgcaagccgatgaacgagtagtagtattatgagagtc |
17814477 |
T |
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