View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13912_high_5 (Length: 601)

Name: NF13912_high_5
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13912_high_5
NF13912_high_5
[»] chr6 (8 HSPs)
chr6 (19-590)||(11619841-11620410)
chr6 (272-550)||(11630131-11630406)
chr6 (276-581)||(11672069-11672371)
chr6 (278-580)||(11708537-11708836)
chr6 (273-563)||(11664715-11665002)
chr6 (476-544)||(11757863-11757931)
chr6 (280-395)||(11737810-11737925)
chr6 (476-544)||(12091470-12091538)
[»] scaffold0196 (1 HSPs)
scaffold0196 (308-563)||(14463-14715)
[»] scaffold0019 (1 HSPs)
scaffold0019 (272-590)||(6691-7006)
[»] chr8 (2 HSPs)
chr8 (281-420)||(16391701-16391840)
chr8 (165-198)||(6863097-6863130)
[»] chr4 (2 HSPs)
chr4 (108-208)||(56127356-56127456)
chr4 (110-156)||(51079046-51079092)
[»] chr1 (3 HSPs)
chr1 (501-546)||(44813297-44813342)
chr1 (163-203)||(7890434-7890474)
chr1 (110-156)||(41625467-41625513)
[»] chr5 (1 HSPs)
chr5 (125-172)||(8939824-8939871)
[»] chr2 (1 HSPs)
chr2 (165-203)||(43931735-43931773)


Alignment Details
Target: chr6 (Bit Score: 503; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 19 - 590
Target Start/End: Complemental strand, 11620410 - 11619841
Alignment:
Q  19 cataatactaagatcagatgagacctaaacaaggaaaaatcagttagaatattattatgtcttcgcttgcgtttcataggaaacaaaataggccaagtct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11620410 cataatactaagatcagatgagacctaaacaaggaaaaatcagttagaatattattatttcttcgcttgcgtttcataggaaacaaaataggccaagtct 11620311  T
Q  119 atggttcacaaggaagataagtcttgcgccatgcacaaagtcgttttcaccattaaataaaatgaaatatgatgtgacttattgaaccagatagaaaaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11620310 atggttcacaaggaagataagtcttgcgccatgcacaaagtcgttttcaccattaaataaaatgaaatatgatgtgacttattgaaccagatagaaaaaa 11620211  T
Q  219 -gacttatgcatgatgcaacagtaattcacttttgcatgttagacaaagcacacaaaataattgtttattaagcttaccctagtaaggacccttcctaat 317  Q
     |||||||||||||||||||||||||| |||| || |||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||    
T  11620210 agacttatgcatgatgcaacagtaatttacttgtggatgttagacaaagcccgcaaaataattgtttattaagcttaccctagtaaggactcttcctaat 11620111  T
Q  318 ggtgtagagtcgtaaattgacatgggtgcacggaagagggagttcatcaactgtgaaaataaatcttttgacgattgaagacctaaagaaactacaagta 417  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11620110 ggtgtagagtcgtaaaatgacatgggtgcacggaagagggagttcatcaactgtgaaaataaatcttttgacgattgaagacctaaagcaactacaagta 11620011  T
Q  418 gacatctgatgagtaagaaaattattgaaaaaacatgaccaataacgaaataaactaaaatcaattgcaatgtgctgacgaggggatcgtcaactttagc 517  Q
    ||||||||||||  ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11620010 gacatctgatgaacaagaaaattattgaaaaaac---accaataacgaaataaactaaaatcaattgcaatgtgctgacgaggggatcgtcaactttagc 11619914  T
Q  518 agccatccatgagttttgcaatatctgacaaaccacagaaaaaaggaaacaaagggaagccacagagaataat 590  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11619913 agccatccatgagttttgcagtatctgacaaaccacagaaaaaaggaaacaaagggaagccacagagaataat 11619841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 272 - 550
Target Start/End: Original strand, 11630131 - 11630406
Alignment:
Q  272 aaaataattgtttattaagcttaccctagtaaggacccttcctaatggtgtagagtcgtaaattgacatgggtgcacggaagagggagttcatcaactgt 371  Q
    |||||| |||||||||   || |||||| |||| | |||||| ||||||||||| ||||||| |||||| |||||||| |||||||||||||||||||||    
T  11630131 aaaatagttgtttatttttctcaccctactaagtatccttcccaatggtgtagaatcgtaaaatgacatcggtgcacgaaagagggagttcatcaactgt 11630230  T
Q  372 gaaaataaatcttttgacgattgaagacctaaagaaactacaagtagacatctgatgagtaagaaaattattgaaaaaacatgaccaataacgaaataaa 471  Q
    |||||||||| |||||| |||||| |||| ||||||||||||||||||| |||  |||  ||||||| || ||||||   |  |||||| | ||||||||    
T  11630231 gaaaataaattttttgatgattgatgacccaaagaaactacaagtagacttctagtgaacaagaaaactactgaaaa---agaaccaattaggaaataaa 11630327  T
Q  472 ctaaaatcaattgcaatgtgctgacgaggggatcgtcaactttagcagccatccatgagttttgcaatatctgacaaac 550  Q
    |||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  11630328 ctaaaatcaatttcaatgtgctgatgagggggtcgtcaactttagcagccatccacgagttttgcaatatctgacaaac 11630406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 276 - 581
Target Start/End: Original strand, 11672069 - 11672371
Alignment:
Q  276 taattgtttattaagcttaccctagtaaggacccttcctaatggtgtagagtcgtaaattgacatgggtgcacggaagagggagttcatcaactgtgaaa 375  Q
    |||||||||||||| || |||||| |||| | ||||||| |||||||||| || ||||  |||||||||||||| |||||||||||||||||| ||||||    
T  11672069 taattgtttattaaactcaccctactaagtatccttcctgatggtgtagaatcataaaaggacatgggtgcacgaaagagggagttcatcaacagtgaaa 11672168  T
Q  376 ataaatcttttgacgattgaagacctaaagaaactacaagtagacatctgatgagtaagaaaattattgaaaaaacatgaccaataacgaaataaactaa 475  Q
    ||||||  || || ||||||||||| |||| ||| | |||||||| |||||| |||||||||| | ||||| ||||   ||| |||| ||||||||||||    
T  11672169 ataaattcttcgatgattgaagacccaaagcaaccaaaagtagacttctgatcagtaagaaaaatgttgaagaaac---accgataaggaaataaactaa 11672265  T
Q  476 aatcaattgcaatgtgctgacgaggggatcgtcaactttagcagccatccatgagttttgcaatatctgacaaaccacagaaaaaaggaaacaaagggaa 575  Q
    |||||||||||| ||||||||  |||||| |||||| ||||| |||| |||||||||||| ||||| ||||| || ||| ||| ||||  |||||||||     
T  11672266 aatcaattgcaacgtgctgacacggggattgtcaacattagccgccaaccatgagttttgaaatatttgacagacaacaaaaataaggtgacaaagggac 11672365  T
Q  576 gccaca 581  Q
    ||||||    
T  11672366 gccaca 11672371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 278 - 580
Target Start/End: Original strand, 11708537 - 11708836
Alignment:
Q  278 attgtttattaagcttaccctagtaaggacccttcctaatggtgtagagtcgtaaattgacatgggtgcacggaagagggagttcatcaactgtgaaaat 377  Q
    |||||||| || |||||||||| | || | |||||| |||||||||| ||| ||||  ||||| |||||||| |||||||||||||||||||||  ||||    
T  11708537 attgtttaatatgcttaccctacttagtatccttcccaatggtgtagcgtcataaaaagacatcggtgcacgaaagagggagttcatcaactgtagaaat 11708636  T
Q  378 aaatcttttgacgattgaagacctaaagaaactacaagtagacatctgatgagtaagaaaattattgaaaaaacatgaccaataacgaaataaactaaaa 477  Q
    ||   |||||| ||||||||||| |||| |||||||| ||||| |||  | |  | ||||| |   ||| || |    ||||  | ||| ||||||||||    
T  11708637 aagaattttgaggattgaagacccaaagcaactacaaatagacttctagtcaacatgaaaaatgccgaagaagct---ccaagtaggaagtaaactaaaa 11708733  T
Q  478 tcaattgcaatgtgctgacgaggggatcgtcaactttagcagccatccatgagttttgcaatatctgacaaaccacagaaaaaaggaaacaaagggaagc 577  Q
    |||| ||||| ||||||||  | |||| ||| || |||||||||||||||||||||||||||||||||||||||| | ||| ||||  || |||||||||    
T  11708734 tcaactgcaacgtgctgacacgaggattgtctacattagcagccatccatgagttttgcaatatctgacaaaccagaaaaataaggtgaccaagggaagc 11708833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 273 - 563
Target Start/End: Complemental strand, 11665002 - 11664715
Alignment:
Q  273 aaataattgtttattaagcttaccctagtaaggacccttcctaatggtgtagagtcgtaaattgacatgggtgcacggaagagggagttcatcaactgtg 372  Q
    ||||| ||||||| || |||||||||| | || | |||||| |||||||||| ||| ||||  ||||| |||||||| |||||||| ||||||||  ||     
T  11665002 aaatatttgtttaataggcttaccctacttagtatccttcccaatggtgtagcgtcataaaaagacattggtgcacgaaagagggacttcatcaatcgta 11664903  T
Q  373 aaaataaatcttttgacgattgaagacctaaagaaactacaagtagacatctgatgagtaagaaaattattgaaaaaacatgaccaataacgaaataaac 472  Q
    ||||||||| |||||| ||||||||||||||||||||||||| ||||| ||  || |  | ||||| |  |||| ||| ||  ||||| | | |||| ||    
T  11664902 aaaataaatattttgaagattgaagacctaaagaaactacaaatagacttcgtatcaacatgaaaaatgctgaagaaa-at--ccaatcagggaatatac 11664806  T
Q  473 taaaatcaattgcaatgtgctgacgaggggatcgtcaactttagcagccatccatgagttttgcaatatctgacaaaccacagaaaaaagg 563  Q
    ||||||||| |||||  |||||||  | |||| |||||| ||||||||||||||  ||||||| | ||| |||||||||||| ||| ||||    
T  11664805 taaaatcaactgcaacatgctgacacgaggattgtcaacgttagcagccatccacaagttttgtagtatttgacaaaccacaaaaataagg 11664715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 476 - 544
Target Start/End: Complemental strand, 11757931 - 11757863
Alignment:
Q  476 aatcaattgcaatgtgctgacgaggggatcgtcaactttagcagccatccatgagttttgcaatatctg 544  Q
    |||||||||||||||||||||  | ||||||||||| |||||||||||||||||||||||| |||||||    
T  11757931 aatcaattgcaatgtgctgacttgaggatcgtcaacattagcagccatccatgagttttgcgatatctg 11757863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 280 - 395
Target Start/End: Original strand, 11737810 - 11737925
Alignment:
Q  280 tgtttattaagcttaccctagtaaggacccttcctaatggtgtagagtcgtaaattgacatgggtgcacggaagagggagttcatcaactgtgaaaataa 379  Q
    |||||| || |||||||||| |||| | |||||| |||||||||||||| ||||  ||||| ||||| || || ||||||||||| || |||||||||||    
T  11737810 tgtttaatatgcttaccctactaagtatccttcccaatggtgtagagtcataaaacgacattggtgctcgaaaaagggagttcattaattgtgaaaataa 11737909  T
Q  380 atcttttgacgattga 395  Q
    || |||||| ||||||    
T  11737910 atattttgatgattga 11737925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 544
Target Start/End: Original strand, 12091470 - 12091538
Alignment:
Q  476 aatcaattgcaatgtgctgacgaggggatcgtcaactttagcagccatccatgagttttgcaatatctg 544  Q
    |||||||||||||||||||||  | |||| |||||| ||||| |||||||||||||||||| |||||||    
T  12091470 aatcaattgcaatgtgctgacttgaggattgtcaacattagcggccatccatgagttttgcgatatctg 12091538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 308 - 563
Target Start/End: Complemental strand, 14715 - 14463
Alignment:
Q  308 ccttcctaatggtgtagagtcgtaaattgacatgggtgcacggaagagggagttcatcaactgtgaaaataaatcttttgacgattgaagacctaaagaa 407  Q
    |||||| |||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||| |    
T  14715 ccttcccaatggtgtagagtcataaaatgacatgggtgctcggaagagggagttcatcaactgtgaaaataaataatttgatgattgaagacctaaagca 14616  T
Q  408 actacaagtagacatctgatgagtaagaaaattattgaaaaaacatgaccaataacgaaataaactaaaatcaattgcaatgtgctgacgaggggatcgt 507  Q
    ||||||||||||| |||| ||| ||  |||| |||||||||| |   |||||||  |||||||||||||||||||| ||||| ||||||  | |||| ||    
T  14615 actacaagtagacctctggtgaatataaaaactattgaaaaagc---accaatagtgaaataaactaaaatcaatttcaatgcgctgacatgtggattgt 14519  T
Q  508 caactttagcagccatccatgagttttgcaatatctgacaaaccacagaaaaaagg 563  Q
    |||| ||||||||||||||||| ||||||||||||  | |||||||| ||| ||||    
T  14518 caacgttagcagccatccatgaattttgcaatatcgaaaaaaccacaaaaagaagg 14463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 272 - 590
Target Start/End: Original strand, 6691 - 7006
Alignment:
Q  272 aaaataattgtttattaagcttaccctagtaaggacccttcctaatggtgtagagtcgtaaattgacatgggtgcacggaagagggagttcatcaactgt 371  Q
    |||||||||||  ||||  || |||||| |||| | |||||| |||||||| || || |||| |||||| |||||| | |||||||| |||||||  |||    
T  6691 aaaataattgtgcattattctcaccctactaagtatccttcccaatggtgttgaatcataaaatgacataggtgcatgaaagagggaattcatcagttgt 6790  T
Q  372 gaaaataaatcttttgacgattgaagacctaaagaaactacaagtagacatctgatgagtaagaaaattattgaaaaaacatgaccaataacgaaataaa 471  Q
    ||||||||||||||||| |||| |||||| |||| ||||| |||||||||||||||||  || |||| | |||||||| |   ||| |||| || || ||    
T  6791 gaaaataaatcttttgatgatttaagacccaaagtaactataagtagacatctgatgaacaaaaaaactgttgaaaaacc---accgataaggagatgaa 6887  T
Q  472 ctaaaatcaattgcaatgtgctgacgaggggatcgtcaactttagcagccatccatgagttttgcaatatctgacaaaccacagaaaaaaggaaacaaag 571  Q
    ||||||||||| ||||||||||||| ||||||| |||||| |||| ||||||||| |||||||||||||||||||||| |||| ||| ||||  ||||||    
T  6888 ctaaaatcaatcgcaatgtgctgacaaggggattgtcaacattagaagccatccacgagttttgcaatatctgacaaaacacaaaaataaggtgacaaag 6987  T
Q  572 ggaagccacagagaataat 590  Q
      |||||  ||||||||||    
T  6988 aaaagccgtagagaataat 7006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 281 - 420
Target Start/End: Original strand, 16391701 - 16391840
Alignment:
Q  281 gtttattaagcttaccctagtaaggacccttcctaatggtgtagagtcgtaaattgacatgggtgcacggaagagggagttcatcaactgtgaaaataaa 380  Q
    ||||| || |||||||||| | || | |||||| ||||||||| |||| ||||  | ||| |||||||| || |||||||||||||||||| ||||||||    
T  16391701 gtttaatatgcttaccctacttagtatccttcccaatggtgtacagtcataaaaaggcatcggtgcacgaaaaagggagttcatcaactgtaaaaataaa 16391800  T
Q  381 tcttttgacgattgaagacctaaagaaactacaagtagac 420  Q
    | |||||| |||||||||||||||| || ||||| |||||    
T  16391801 tattttgaggattgaagacctaaagcaattacaaatagac 16391840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 6863097 - 6863130
Alignment:
Q  165 tcaccattaaataaaatgaaatatgatgtgactt 198  Q
    |||||||||||| |||||||||||||||||||||    
T  6863097 tcaccattaaattaaatgaaatatgatgtgactt 6863130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 56127356 - 56127456
Alignment:
Q  108 aggccaagtctatggttcacaaggaagataagtcttgcgccatgcacaaagtcgttttcaccattaaataaaatgaaatatgatgtgacttattgaacca 207  Q
    |||||||||||||||| ||||||  ||| ||||||||| ||||||||||| | ||||||||||||   | ||| || |||||||| |||||||||| |||    
T  56127356 aggccaagtctatggtgcacaagtgagacaagtcttgcaccatgcacaaacttgttttcaccattggttcaaaggagatatgatgagacttattgatcca 56127455  T
Q  208 g 208  Q
    |    
T  56127456 g 56127456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 51079046 - 51079092
Alignment:
Q  110 gccaagtctatggttcacaaggaagataagtcttgcgccatgcacaa 156  Q
    ||||| |||||||| |||||| |||||||||||||| ||||||||||    
T  51079046 gccaactctatggtgcacaagcaagataagtcttgcaccatgcacaa 51079092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 501 - 546
Target Start/End: Complemental strand, 44813342 - 44813297
Alignment:
Q  501 ggatcgtcaactttagcagccatccatgagttttgcaatatctgac 546  Q
    |||| |||||| |||||||||||||| |||||||||||||||||||    
T  44813342 ggattgtcaacattagcagccatccaagagttttgcaatatctgac 44813297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 7890434 - 7890474
Alignment:
Q  163 tttcaccattaaataaaatgaaatatgatgtgacttattga 203  Q
    |||||||||||||| ||||||||||||||||||| ||||||    
T  7890434 tttcaccattaaattaaatgaaatatgatgtgacgtattga 7890474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 41625467 - 41625513
Alignment:
Q  110 gccaagtctatggttcacaaggaagataagtcttgcgccatgcacaa 156  Q
    |||||||||||||| |||| | |||||||||||||| ||||||||||    
T  41625467 gccaagtctatggtgcacatgcaagataagtcttgcaccatgcacaa 41625513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 8939824 - 8939871
Alignment:
Q  125 cacaaggaagataagtcttgcgccatgcacaaagtcgttttcaccatt 172  Q
    |||||||||| |||||||||| ||||||||||||| |||| |||||||    
T  8939824 cacaaggaagttaagtcttgcaccatgcacaaagttgtttccaccatt 8939871  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 43931773 - 43931735
Alignment:
Q  165 tcaccattaaataaaatgaaatatgatgtgacttattga 203  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  43931773 tcaccattaaatcaaatgatatatgatgtgacttattga 43931735  T

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