View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13912_high_7 (Length: 576)
Name: NF13912_high_7
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13912_high_7 |
 | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
| [»] scaffold0096 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 4 - 560
Target Start/End: Original strand, 43070852 - 43071414
Alignment:
| Q |
4 |
cataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacagga- |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43070852 |
cataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaa |
43070951 |
T |
|
| Q |
103 |
----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcatt |
198 |
Q |
| |
|
|||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| |
|
|
| T |
43070952 |
caacgatttaggatatat--atagtagcatcttcaacacacctggctgatacgatgccgcagacgacaacggcgaaggtgatgtcggaatcgagagcatt |
43071049 |
T |
|
| Q |
199 |
ggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaac |
298 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
43071050 |
ggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaac |
43071149 |
T |
|
| Q |
299 |
tcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaagga |
397 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43071150 |
tcaaagggcgaagagatttttttgagtaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaagga |
43071249 |
T |
|
| Q |
398 |
gaaagaggtggacatagataagtgtggagtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatt |
495 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
43071250 |
gaaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataattaatgagtcaaaacttggataagtgcataggaaatatacatcaaatt |
43071349 |
T |
|
| Q |
496 |
tgaaaatttgactcggattagatcaaatgatgagatgcatggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43071350 |
tgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaac |
43071414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 140 - 560
Target Start/End: Complemental strand, 1262601 - 1262177
Alignment:
| Q |
140 |
ctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggagag |
239 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
1262601 |
ctggctgatacgatgccgcatacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagaa |
1262502 |
T |
|
| Q |
240 |
agcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctgaa |
339 |
Q |
| |
|
|||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| |||| |
|
|
| T |
1262501 |
agcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagattttttcgagtaaaagcaatatgaa |
1262402 |
T |
|
| Q |
340 |
ttccaacacataaagaaggaataatgggagaggagagaagagaactt--aaaatgaaggagaaagaggtggacatagataagtgtggagtcaatttagga |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||| ||| |
|
|
| T |
1262401 |
ttccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaaatgaaggagaaagaggtgaacatcgataagtgtggagtcaatttggga |
1262302 |
T |
|
| Q |
438 |
attggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggattagatcaaatgatgagatgcat |
535 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| |
|
|
| T |
1262301 |
attggaggataattaatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcat |
1262202 |
T |
|
| Q |
536 |
ggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
1262201 |
gcttagccaaatgatgagatccaac |
1262177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 326 - 560
Target Start/End: Original strand, 48849601 - 48849839
Alignment:
| Q |
326 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa--tgaaggagaaagaggtggacatagataagtgtg |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||||||| |
|
|
| T |
48849601 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagatgagagaagagaacttaaaaaatgaaggagaaagaggtgaacatcgataagtgtg |
48849700 |
T |
|
| Q |
424 |
gagtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggattagatcaa |
521 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
48849701 |
gagtcaatttgggaatttgaggataattaatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaa |
48849800 |
T |
|
| Q |
522 |
atgatgagatgcatggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
48849801 |
aggatgagatgcatgcttagccaaatgatgagatccaac |
48849839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 140 - 314
Target Start/End: Original strand, 48849391 - 48849565
Alignment:
| Q |
140 |
ctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggagag |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
48849391 |
ctggctgatacgatgccgcagacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgaaaggagagagctgcggcgacggagaa |
48849490 |
T |
|
| Q |
240 |
agcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagaga |
314 |
Q |
| |
|
|||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48849491 |
agcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagaga |
48849565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 353 - 559
Target Start/End: Original strand, 26909806 - 26910012
Alignment:
| Q |
353 |
agaaggaataatgggagaggagagaagagaactt--aaaatgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaattggaggataat |
450 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | ||||||||||||||| |||||| ||| |||||||||||||||||| | |||||||||||||||| |
|
|
| T |
26909806 |
agaaggaataatgggagaggagaaaagagaacgttaaaaatgaaggagaaaaaggtgggcatggataagtgtggagtcaatctgggaattggaggataat |
26909905 |
T |
|
| Q |
451 |
taatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggattagatcaaatgatgagatgcatggttagccaaatg |
548 |
Q |
| |
|
||||||||| ||| ||||||| ||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
26909906 |
----gagtcaaaacttgaataagtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatg |
26910001 |
T |
|
| Q |
549 |
atgagatccaa |
559 |
Q |
| |
|
|| |||||||| |
|
|
| T |
26910002 |
ataagatccaa |
26910012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 422; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 4 - 560
Target Start/End: Original strand, 23348450 - 23349012
Alignment:
| Q |
4 |
cataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacagga- |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23348450 |
cataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaa |
23348549 |
T |
|
| Q |
103 |
----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcatt |
198 |
Q |
| |
|
|||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| |
|
|
| T |
23348550 |
caacgatttaggatatat--atagtagcatcttcaacacacctggctgatacgatgccgcagacgacaacggcgaaggtgatgtcggaatcgagagcatt |
23348647 |
T |
|
| Q |
199 |
ggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaac |
298 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
23348648 |
ggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaac |
23348747 |
T |
|
| Q |
299 |
tcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaagga |
397 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23348748 |
tcaaagggcgaagagatttttttgagtaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaagga |
23348847 |
T |
|
| Q |
398 |
gaaagaggtggacatagataagtgtggagtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatt |
495 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
23348848 |
gaaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataattaatgagtcaaaacttggataagtgcataggaaatatacatcaaatt |
23348947 |
T |
|
| Q |
496 |
tgaaaatttgactcggattagatcaaatgatgagatgcatggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23348948 |
tgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaac |
23349012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 4 - 560
Target Start/End: Complemental strand, 12742339 - 12741777
Alignment:
| Q |
4 |
cataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacagga- |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12742339 |
cataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaa |
12742240 |
T |
|
| Q |
103 |
----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcatt |
198 |
Q |
| |
|
|||||||||||||| |||| | |||||||||||||||| ||||||||||||||||||||||||||| || ||||||||| | ||||||||||||| |
|
|
| T |
12742239 |
caacgatttaggatatat--atagtagcatcttcaacacaccttgctgatacgatgccgcagacgacaacgacgaaggtgatgtcggaatcgagagcatt |
12742142 |
T |
|
| Q |
199 |
ggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaac |
298 |
Q |
| |
|
||||||||||||||| |||||||||||||| || ||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
12742141 |
ggtgaagggcgacgacaggagagagctgcggcggcggagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaac |
12742042 |
T |
|
| Q |
299 |
tcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaagga |
397 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12742041 |
tcaaagggcgaagagatttttttgagtaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaagga |
12741942 |
T |
|
| Q |
398 |
gaaagaggtggacatagataagtgtggagtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatt |
495 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
12741941 |
gaaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataattaatgagtcaaaacttggataagtgcataggaaatatacatcaaatt |
12741842 |
T |
|
| Q |
496 |
tgaaaatttgactcggattagatcaaatgatgagatgcatggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12741841 |
tgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaac |
12741777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 4 - 560
Target Start/End: Original strand, 18354777 - 18355345
Alignment:
| Q |
4 |
cataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacagga- |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18354777 |
cataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagctacaggaa |
18354876 |
T |
|
| Q |
103 |
----gatttaggatatatgtata----gcatcatcttcaacacacctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagag |
194 |
Q |
| |
|
|||||||||||||| |||| | | ||||||||||||||||| ||||||||| ||||||||| ||||| ||| ||||||||| | ||||||||| |
|
|
| T |
18354877 |
caacgatttaggatatatatatatatagtagcatcttcaacacacctgactgatacgacgccgcagacaacaacagcgaaggtgatgtcggaatcgagag |
18354976 |
T |
|
| Q |
195 |
cattggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaa |
294 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||||||||| |||||||||||||||||| |||||||| || |
|
|
| T |
18354977 |
cattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaacggcagagaattttgtttgaatgtctgagagtgagatggaagatgaa |
18355076 |
T |
|
| Q |
295 |
caactcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatga |
393 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18355077 |
caactcaaagggcgaagagatttttttgagtaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatga |
18355176 |
T |
|
| Q |
394 |
aggagaaagaggtggacatagataagtgtggagtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatca |
491 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
18355177 |
aggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataattaatgagtcaaaacttggataagtgcataggaaatatacatca |
18355276 |
T |
|
| Q |
492 |
aatttgaaaatttgactcggattagatcaaatgatgagatgcatggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18355277 |
aatttgaaaatttgactcagattagattaaaggatgagatgcatgcttagccaaatgatgagatccaac |
18355345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 260 - 560
Target Start/End: Original strand, 10328626 - 10328924
Alignment:
| Q |
260 |
ttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaagga |
359 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
10328626 |
ttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgagtaaaagcaatctaaattccaacacataaagaagga |
10328725 |
T |
|
| Q |
360 |
ataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaattggaggataattaatgagt |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10328726 |
ataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataattaatgagt |
10328825 |
T |
|
| Q |
459 |
caaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggattagatc-aaatgatgagatgcatggttagccaaatgatgagat |
555 |
Q |
| |
|
||||| ||||||||||| |||||| ||||||||| ||||||||||| ||||||||| ||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
10328826 |
caaaacttggataagtgcataggaa------atcaaattttcaaatttgactcagattagatcaaaaggatgagatgcatgcttagccaaatgatgagat |
10328919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 10328495 - 10328627
Alignment:
| Q |
4 |
cataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacagga- |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
10328495 |
cataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagatacatgaa |
10328594 |
T |
|
| Q |
103 |
----gatttaggatatatgtatagcatcatctt |
131 |
Q |
| |
|
|||||||||||||| ||||| | |||||| |
|
|
| T |
10328595 |
caacgatttaggatatatatatagtagcatctt |
10328627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 476 - 560
Target Start/End: Original strand, 1615863 - 1615947
Alignment:
| Q |
476 |
taggaaatatacatcaaatttgaaaatttgactcggattagatcaaatgatgagatgcatggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
1615863 |
taggaaatatacatcaaatttgaaagtttgactcaaattagatcaaaggatgagatgcatgcttagccaaatgatgcgatccaac |
1615947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 476 - 560
Target Start/End: Complemental strand, 24454688 - 24454603
Alignment:
| Q |
476 |
taggaaatatacatcaaatttgaaaatttgac-tcggattagatcaaatgatgagatgcatggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
||||||| | ||||||||||||||| ||||| || |||||||||||| ||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
24454688 |
taggaaaaagacatcaaatttgaaagtttgaagtcagattagatcaaaggatgagatgaatgtcaagccaaatgatgagatccaac |
24454603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 4 - 560
Target Start/End: Original strand, 19881581 - 19882143
Alignment:
| Q |
4 |
cataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacagga- |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19881581 |
cataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaa |
19881680 |
T |
|
| Q |
103 |
----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcatt |
198 |
Q |
| |
|
|||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| |
|
|
| T |
19881681 |
caacgatttaggatatat--atagtagcatcttcaacacacctggctgatacgatgccgcagacgacaacggcgaaggtgatgtcggaatcgagagcatt |
19881778 |
T |
|
| Q |
199 |
ggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaac |
298 |
Q |
| |
|
||||||||| || || |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
19881779 |
ggtgaagggtgaggacaggagagagctgcggtgacggagagagcggcaacgacagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaac |
19881878 |
T |
|
| Q |
299 |
tcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaagga |
397 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
19881879 |
tcaaagggcgaagagatttttttgagtaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagataacttaaaaatgaagga |
19881978 |
T |
|
| Q |
398 |
gaaagaggtggacatagataagtgtggagtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatt |
495 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19881979 |
gaaagaggtggacatcgataaatgtggagtcaatttgggaattggaggataattaatgagtcaaaatttggataagtgcataggaaatatacatcaaatt |
19882078 |
T |
|
| Q |
496 |
tgaaaatttgactcggattagatcaaatgatgagatgcatggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19882079 |
tgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaac |
19882143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 4 - 560
Target Start/End: Original strand, 53972756 - 53973318
Alignment:
| Q |
4 |
cataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacagga- |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53972756 |
cataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaa |
53972855 |
T |
|
| Q |
103 |
----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcatt |
198 |
Q |
| |
|
|||||||||||||| |||| | |||||||||||||| ||||||||||||||||||||||||||||| || | ||||||| | ||||||||||||| |
|
|
| T |
53972856 |
caacgatttaggatatat--atagtagcatcttcaacacacttggctgatacgatgccgcagacgacaacgacgaaagtgatgtcggaatcgagagcatt |
53972953 |
T |
|
| Q |
199 |
ggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaac |
298 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| |||||| |
|
|
| T |
53972954 |
ggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaacgacagagaattttgtttaaatgtctgagagtgaggtggaagatgaacaac |
53973053 |
T |
|
| Q |
299 |
tcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaagga |
397 |
Q |
| |
|
|||||||| ||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
53973054 |
tcaaagggagaagagatttttttgagtaaaagcaatctgaattccaacacataaagaatgaataatgggagaggagagaagaaaacttaaaaatgaagga |
53973153 |
T |
|
| Q |
398 |
gaaagaggtggacatagataagtgtggagtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatt |
495 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
53973154 |
gaaagaggtggacatcgataagtgtggagtcaatttgagaattggaggataattaatgagtcaaaatttggataagtgcataggaaatatacatcaaatt |
53973253 |
T |
|
| Q |
496 |
tgaaaatttgactcggattagatcaaatgatgagatgcatggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
53973254 |
tgaaaatttgactcagattagatcaaaggatgagatgcaggcttagccaaatgatgagatccaac |
53973318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 126 - 560
Target Start/End: Complemental strand, 37982878 - 37982438
Alignment:
| Q |
126 |
catcttcaacacacctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagct |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37982878 |
catcttcaacacacctggctgatacgatgccgcagacgacaacgacgaaggtgatgtcggaatcgagagcattggtgaagggcgacgataggagagagct |
37982779 |
T |
|
| Q |
226 |
gcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngaga |
325 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| |
|
|
| T |
37982778 |
gcggcgacggagagagcggcaacgacagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcagagggcgaagagatttttttgagt |
37982679 |
T |
|
| Q |
326 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataagtgtgg |
424 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37982678 |
aaaagcaatctgaattccaaaacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtgg |
37982579 |
T |
|
| Q |
425 |
agtcaatttaggaattggaggataattaatgagtcaaaatttggataa---gtg--taggaaatatacatcaaatttgaaaatttgactcggattagatc |
519 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37982578 |
agtcaatttgggaattggaggataattaatgagtcaaaacttggataagacgtgcataggaaatatacatcaaatttgaaaatttgactcagattagatt |
37982479 |
T |
|
| Q |
520 |
aaatgatgagatgcatggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37982478 |
aaaggatgagatgcatgcttagccaaatgatgagatccaac |
37982438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 140 - 560
Target Start/End: Complemental strand, 31685575 - 31685166
Alignment:
| Q |
140 |
ctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggagag |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| | |||||| | ||||||||||||||||||| |||||||||||||| |
|
|
| T |
31685575 |
ctggctgatacgatgccgcagacgacaacggcgaaggtgatgtcggaatcgatatcattggtgaagggcgacgacaggagagagctgcg----------- |
31685487 |
T |
|
| Q |
240 |
agcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnn-gagaaaaagcaatctga |
338 |
Q |
| |
|
|||||| || |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| ||| |
|
|
| T |
31685486 |
----gcaacggcatataattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagattttttttgagtaaaagcaatttga |
31685391 |
T |
|
| Q |
339 |
attccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatttagga |
437 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
31685390 |
attccaacacataaagaaggaataatggaagaggagagaaaagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgaga |
31685291 |
T |
|
| Q |
438 |
attggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggattagatcaaatgatgagatgcat |
535 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| |
|
|
| T |
31685290 |
attggaggataattaatgagtcaaaacttgaataagtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcat |
31685191 |
T |
|
| Q |
536 |
ggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
| |||||||||||||||||| |||| |
|
|
| T |
31685190 |
gcttagccaaatgatgagattcaac |
31685166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 37983059 - 37982961
Alignment:
| Q |
4 |
cataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacagga |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37983059 |
cataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacagga |
37982961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 478 - 560
Target Start/End: Complemental strand, 17681938 - 17681855
Alignment:
| Q |
478 |
ggaaatatacatcaaatttgaaaatttgactcg-gattagatcaaatgatgagatgcatggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| |||||||||||| ||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
17681938 |
ggaaatatacattaaatttaaaaatttgactcaagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaac |
17681855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 512 - 560
Target Start/End: Original strand, 12538620 - 12538668
Alignment:
| Q |
512 |
attagatcaaatgatgagatgcatggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
||||||||||| |||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
12538620 |
attagatcaaaggatgtgatgcatgcttagccaaatgatgagatccaac |
12538668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 512 - 560
Target Start/End: Original strand, 24761882 - 24761930
Alignment:
| Q |
512 |
attagatcaaatgatgagatgcatggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
||||||||||| ||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
24761882 |
attagatcaaaggatgagatgcatgctgagccaaatgatgagatccaac |
24761930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 512 - 560
Target Start/End: Complemental strand, 24816052 - 24816004
Alignment:
| Q |
512 |
attagatcaaatgatgagatgcatggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
||||||||||| ||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
24816052 |
attagatcaaaggatgagatgcatgctgagccaaatgatgagatccaac |
24816004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 512 - 560
Target Start/End: Original strand, 53027736 - 53027784
Alignment:
| Q |
512 |
attagatcaaatgatgagatgcatggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
||||||||||| ||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
53027736 |
attagatcaaaggatgagatgcatgctgagccaaatgatgagatccaac |
53027784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 560
Target Start/End: Complemental strand, 2550079 - 2550026
Alignment:
| Q |
506 |
actcggattagatcaaatgatgagatgcatggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
|||| ||||| |||||| ||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
2550079 |
actcagattaaatcaaaggatgagatgcatgcttagccaaatgat-agatccaac |
2550026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 17682246 - 17682201
Alignment:
| Q |
162 |
cgacaacggcggaggtgatgttgtaatcgagagcattggtgaaggg |
207 |
Q |
| |
|
|||||||||| ||||||||| | |||||||||||||||||||||| |
|
|
| T |
17682246 |
cgacaacggcaaaggtgatgtcggaatcgagagcattggtgaaggg |
17682201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 19766488 - 19766443
Alignment:
| Q |
162 |
cgacaacggcggaggtgatgttgtaatcgagagcattggtgaaggg |
207 |
Q |
| |
|
||||||||||| ||||||||| | |||| ||||||||||||||||| |
|
|
| T |
19766488 |
cgacaacggcgaaggtgatgtcggaatctagagcattggtgaaggg |
19766443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 4 - 560
Target Start/End: Original strand, 7472955 - 7473521
Alignment:
| Q |
4 |
cataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacagga- |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7472955 |
cataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaa |
7473054 |
T |
|
| Q |
103 |
----gatttagg--atatatgtatagcatcatcttcaacacacctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagca |
196 |
Q |
| |
|
|||||||| |||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |
|
|
| T |
7473055 |
caacgatttaggatatatatatatagtagcatcttcaacacacctggctgatacgatgccgcagacgacaacggcgaaggtgatgtcggaatcgagagca |
7473154 |
T |
|
| Q |
197 |
ttggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaaca |
296 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
7473155 |
ttggtgaagggcgacgacaggagagagctgcggcgacggagagagcgacaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaaca |
7473254 |
T |
|
| Q |
297 |
actcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaag |
395 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7473255 |
actcaaagggcgaagagatttttttgagtaaaagcaatctaaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaag |
7473354 |
T |
|
| Q |
396 |
gagaaagaggtggacatagataagtgtggagtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaa |
493 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
7473355 |
gagaaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataactaatgagtcaaaacttggataagtgcataggaaatatacatcaaa |
7473454 |
T |
|
| Q |
494 |
tttgaaaatttgactcggattagatcaaatgatgagatgcatggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
7473455 |
tttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagctaaatgatgagatccaac |
7473521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 4 - 560
Target Start/End: Complemental strand, 9044453 - 9043891
Alignment:
| Q |
4 |
cataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacagga- |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9044453 |
cataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaa |
9044354 |
T |
|
| Q |
103 |
----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcatt |
198 |
Q |
| |
|
|||||||||||||| |||| | |||||||||||||| ||||||||||||||| ||||||||||||| || ||||||||| | ||||||||||||| |
|
|
| T |
9044353 |
caacgatttaggatatat--atagtagcatcttcaacacacttggctgatacgatgctgcagacgacaacgacgaaggtgatgtcgaaatcgagagcatt |
9044256 |
T |
|
| Q |
199 |
ggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaac |
298 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
9044255 |
ggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaac |
9044156 |
T |
|
| Q |
299 |
tcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaagga |
397 |
Q |
| |
|
|||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9044155 |
tcaaagggcgaagaaatttttttgagtaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaagga |
9044056 |
T |
|
| Q |
398 |
gaaagaggtggacatagataagtgtggagtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatt |
495 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
9044055 |
gaaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataattaatgagtcaaaacttggataaatgcataggaaatatacatcaaatt |
9043956 |
T |
|
| Q |
496 |
tgaaaatttgactcggattagatcaaatgatgagatgcatggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
| |||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9043955 |
taaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaac |
9043891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Original strand, 30442013 - 30442579
Alignment:
| Q |
1 |
caacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30442013 |
caacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacag |
30442112 |
T |
|
| Q |
101 |
ga-----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagc |
195 |
Q |
| |
|
|| |||||||||||||| |||| | ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | |||||||||| |
|
|
| T |
30442113 |
gaacaacgatttaggatatat--atagtagcatcttcaacacatatggctgatacgatgccgcagacgacaacggccaaggtgatgtcggaatcgagagc |
30442210 |
T |
|
| Q |
196 |
attggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaac |
295 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
30442211 |
attggtgaagggcgacgacaggagagagctgcggcaacggagagagcggcaacgacagagaattttgtttgaatgtctgagagtgaggtggaagatgaac |
30442310 |
T |
|
| Q |
296 |
aactcaaagggcgaagaga-nnnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaac-ttaaaatga |
393 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| |
|
|
| T |
30442311 |
aactcaaagggcgaagagattttttttgagtaaaagcaatctgaattccaacacataaagaaggaataatgagagtggagagaagagaactttaaaatga |
30442410 |
T |
|
| Q |
394 |
aggagaaagaggtggacatagataagtgtggagtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatca |
491 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
30442411 |
aggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataattaatgagtcaaaacttggaaaagtgcataggaaatatacatca |
30442510 |
T |
|
| Q |
492 |
aatttgaaaatttgactcggattagatcaaatgatgagatgcatggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30442511 |
aatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaac |
30442579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 350 - 560
Target Start/End: Original strand, 22009359 - 22009560
Alignment:
| Q |
350 |
taaagaaggaataatgggagaggagagaagagaactt--aaaatgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaattggaggat |
447 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| | |||| |||||||||| |||| | ||| |||||||||||||||||||| |||||||||| |
|
|
| T |
22009359 |
taaagaaggaataatgggagaggagagaacagaaagttgaaaaggaaggagaaaaaggttggcatcgataagtgtggagtcaatttgggaattggag--- |
22009455 |
T |
|
| Q |
448 |
aattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggattagatcaaatgatgagatgcatggttagccaa |
545 |
Q |
| |
|
|||||| ||||||||| | ||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||| |||||||| |
|
|
| T |
22009456 |
----------tcaaaacttggataagagcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaa |
22009545 |
T |
|
| Q |
546 |
atgatgagatccaac |
560 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
22009546 |
atgatgagatccaac |
22009560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 40163996 - 40163917
Alignment:
| Q |
5 |
ataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttag |
87 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||| |||||| | ||||||||| ||| || |||||||||||||||||||| |
|
|
| T |
40163996 |
ataatacataattgtaaaatctatgtaaatatca---attcacatccaaacaaactaaatatataatggaataacaaagttag |
40163917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 387 - 446
Target Start/End: Original strand, 19085182 - 19085241
Alignment:
| Q |
387 |
aaaatgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaattggagga |
446 |
Q |
| |
|
|||||| ||||||||||||||| || |||||||||||||||||| | |||||||||||| |
|
|
| T |
19085182 |
aaaatggaggagaaagaggtgggtatcgataagtgtggagtcaatatgggaattggagga |
19085241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 560
Target Start/End: Original strand, 22004441 - 22004489
Alignment:
| Q |
512 |
attagatcaaatgatgagatgcatggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
||||||||||| ||||| ||| ||| | ||||||||||||||||||||| |
|
|
| T |
22004441 |
attagatcaaaggatgatatgaatgctgagccaaatgatgagatccaac |
22004489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 4 - 560
Target Start/End: Complemental strand, 1305 - 743
Alignment:
| Q |
4 |
cataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacagga- |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1305 |
cataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaa |
1206 |
T |
|
| Q |
103 |
----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcatt |
198 |
Q |
| |
|
|||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | ||||||||||||| |
|
|
| T |
1205 |
caacgatttaggatatat--atagtagcatcttcaacacacctggctgatacgatgccgcagacgacaacggcgaaagtgatgtcggaatcgagagcatt |
1108 |
T |
|
| Q |
199 |
ggtgaagggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaac |
298 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||||||||| | ||||||||||||||||||||||||| |||||| |
|
|
| T |
1107 |
ggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaacggcagagaattttgtttaaatgtctgagagtgaggtggaagatgaacaac |
1008 |
T |
|
| Q |
299 |
tcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaagga |
397 |
Q |
| |
|
|||||||| ||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1007 |
tcaaagggagaagagatttttttgagtaaaagcaatttgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaagga |
908 |
T |
|
| Q |
398 |
gaaagaggtggacatagataagtgtggagtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatt |
495 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
907 |
gaaagaggtggacatcgataagtgtggagtcaatttgggaattgaatgataattaatgagtcaaaatttggataagtgcataggaaatatacatcaaatt |
808 |
T |
|
| Q |
496 |
tgaaaatttgactcggattagatcaaatgatgagatgcatggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
807 |
tgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaac |
743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 285; Significance: 1e-159; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 139 - 560
Target Start/End: Original strand, 14677630 - 14678053
Alignment:
| Q |
139 |
cctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggaga |
238 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||| | |||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
14677630 |
cctggctgatacgatgctgcagacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggtgacgataggagagagctgcggcgacggaga |
14677729 |
T |
|
| Q |
239 |
gagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctga |
338 |
Q |
| |
|
||||||||||| ||| | ||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||| ||| ||||||||||||| |
|
|
| T |
14677730 |
gagcggcaacggcagaggattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaaggggaaagagatttttttgagtaaaagcaatctga |
14677829 |
T |
|
| Q |
339 |
attccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataagtgtggagtcaatttagga |
437 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
14677830 |
atttcaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacat-gataagtgtggagtcaatttggga |
14677928 |
T |
|
| Q |
438 |
attggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggattagatcaaatgatgagatgcat |
535 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| |||||||| |||||||||||| |||||||||||| |
|
|
| T |
14677929 |
attggatgataattaatgagtcaaaacttggataagtgcataggaaatatacattaaatttgaaagtttgactcagattagatcaaaggatgagatgcat |
14678028 |
T |
|
| Q |
536 |
ggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
14678029 |
gcttagccaaatgatgagatccaac |
14678053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 139 - 556
Target Start/End: Original strand, 31100480 - 31100900
Alignment:
| Q |
139 |
cctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggaga |
238 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| ||||||||| |
|
|
| T |
31100480 |
cctggatgatacgatgccacagacgacaacggcgaaggtgatgttggaatcgagagcattggtgaagggcgacgacaggagagagttgcggcgacggaga |
31100579 |
T |
|
| Q |
239 |
gagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctga |
338 |
Q |
| |
|
||| ||| ||| || ||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
31100580 |
gagtggcgacggcaaagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggggaagagatttttttgagtaaaagcaatctga |
31100679 |
T |
|
| Q |
339 |
attccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataagtgtggagtcaatttagga |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||| ||| |
|
|
| T |
31100680 |
attccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtgggcatcgataagtgtggagtcaatttggga |
31100779 |
T |
|
| Q |
438 |
attggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggattagatcaaatgatgagatgcat |
535 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||| |||||||| ||| |
|
|
| T |
31100780 |
attggaggataattaatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatacat |
31100879 |
T |
|
| Q |
536 |
ggttagccaaatgatgagatc |
556 |
Q |
| |
|
| ||| ||||||||||||||| |
|
|
| T |
31100880 |
gcttaaccaaatgatgagatc |
31100900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 140 - 560
Target Start/End: Complemental strand, 5658268 - 5657860
Alignment:
| Q |
140 |
ctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggagag |
239 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
5658268 |
ctggatgatacgatgccacagacgacaacggcgaaggtgatgttggaatcaagagcattggtgaagggcgacgacaggagagagctgcggcgacgg---- |
5658173 |
T |
|
| Q |
240 |
agcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctgaa |
339 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| |||||||||||||| |
|
|
| T |
5658172 |
-----------caaagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggggaagagatttttttgagtaaaagcaatctgaa |
5658084 |
T |
|
| Q |
340 |
ttccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaa |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||| |||| |
|
|
| T |
5658083 |
ttccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtgggcatcgataagtgtggagtcaatttgggaa |
5657984 |
T |
|
| Q |
439 |
ttggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggattagatcaaatgatgagatgcatg |
536 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||| |
|
|
| T |
5657983 |
ttggaggataattaatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatg |
5657884 |
T |
|
| Q |
537 |
gttagccaaatgatgagatccaac |
560 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
5657883 |
cttaaccaaatgatgagatccaac |
5657860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 217 - 446
Target Start/End: Original strand, 33688984 - 33689215
Alignment:
| Q |
217 |
gagagagctgcgacgacggagagagcggcaacgacagcgaatt-ttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagan |
315 |
Q |
| |
|
|||||||||||| |||||||||||||||| | | || ||| | |||| ||||||||| ||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
33688984 |
gagagagctgcggcgacggagagagcggcgatgggagagaagtcttgtttgaatgtctaagagtgaggtggaagatgaacaactcaaaggg-gaagagat |
33689082 |
T |
|
| Q |
316 |
nnnnnngagaaaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaac-ttaa-aatgaaggagaaagaggtggacata |
413 |
Q |
| |
|
||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| || |
|
|
| T |
33689083 |
ttttttgagtaaaagcaatctgaattccaaaaagtaaagaaggaataatgggagaggagagaagagaacgttaacaatgaaggagaaagaggtgggtatg |
33689182 |
T |
|
| Q |
414 |
gataagtgtggagtcaatttaggaattggagga |
446 |
Q |
| |
|
|||||||||||||||||| | | |||||||||| |
|
|
| T |
33689183 |
gataagtgtggagtcaatatggaaattggagga |
33689215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 476 - 560
Target Start/End: Original strand, 27541507 - 27541591
Alignment:
| Q |
476 |
taggaaatatacatcaaatttgaaaatttgactcggattagatcaaatgatgagatgcatggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
||||||||||||||||||||||||| ||||| || |||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27541507 |
taggaaatatacatcaaatttgaaagtttgattcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaac |
27541591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 139 - 560
Target Start/End: Original strand, 29862969 - 29863393
Alignment:
| Q |
139 |
cctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggaga |
238 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| | ||||||| | |||||||||||| ||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
29862969 |
cctggctgatacgatgccgcagatgacaacggcaaaagtgatgtcggaatcgagagcatcggtgaagggcgacgacaggagagagctgcggcgacggaga |
29863068 |
T |
|
| Q |
239 |
gagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctga |
338 |
Q |
| |
|
|||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||| ||| ||||||||||||| |
|
|
| T |
29863069 |
gagcggcagcgacagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaaggggaaagagatttttttgagtaaaagcaatctga |
29863168 |
T |
|
| Q |
339 |
attccaacacataaagaaggaataatgggagaggagagaagagaact-taaaatgaaggagaaagaggtggacatagataagtgtggagtcaatttagga |
437 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
29863169 |
attctaacacataaagaaggaataatgggagaggagataagagaactaaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttggga |
29863268 |
T |
|
| Q |
438 |
attggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggattagatcaaatgatgagatgcat |
535 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| |
|
|
| T |
29863269 |
attggaggataattaatgagtcaaaacttggataagtgcataagaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcat |
29863368 |
T |
|
| Q |
536 |
ggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
| | ||||||||||||||||||||| |
|
|
| T |
29863369 |
gctcagccaaatgatgagatccaac |
29863393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 139 - 560
Target Start/End: Original strand, 11242 - 11666
Alignment:
| Q |
139 |
cctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggaga |
238 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||| ||||||||| | | |||||||||||||||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
11242 |
cctggctgatgcaatgccgcagacgacaacggcgaaggtgatgtcggattcgagagcattggtgaagggcgacgacaagagagagctgcggcgacggaga |
11341 |
T |
|
| Q |
239 |
gagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctga |
338 |
Q |
| |
|
|||||| || ||| ||||||||| |||||||||| |||||||||||||||| |||||||||||||| |||| || ||| ||||||||||||| |
|
|
| T |
11342 |
gagcggtgacaacaaagaattttgtttgaatgtctgggagtgaggtggaagatgaacaactcaaagggggaagggatttgtttgagtaaaagcaatctga |
11441 |
T |
|
| Q |
339 |
attccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataagtgtggagtcaatttagga |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||| ||| |
|
|
| T |
11442 |
attccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtgggcatcaataagtgtggagtcaatttggga |
11541 |
T |
|
| Q |
438 |
attggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggattagatcaaatgatgagatgcat |
535 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||| |||||||||||| |
|
|
| T |
11542 |
attggaggataatgaatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaagtttgactcagattaaatcaaaggatgagatgcat |
11641 |
T |
|
| Q |
536 |
ggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
| ||| ||||||||||||||||||| |
|
|
| T |
11642 |
gcttaaccaaatgatgagatccaac |
11666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 139 - 560
Target Start/End: Complemental strand, 35574 - 35152
Alignment:
| Q |
139 |
cctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggaga |
238 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||| ||| || |||||||| |||||||||||||| ||||||||| |
|
|
| T |
35574 |
cctggctgatacgatgccgcaaacgacaacggcgaaggtgatgtcagaatcgagagcatcggtcaaaggcgacgacaggagagagctgcggcgacggaga |
35475 |
T |
|
| Q |
239 |
gagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctga |
338 |
Q |
| |
|
|||| |||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||| || || ||| ||||||||||||| |
|
|
| T |
35474 |
gagcagcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaaggggaaaacgatttttttgagtaaaagcaatctga |
35375 |
T |
|
| Q |
339 |
attccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatttagga |
437 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||||||||||| ||||| ||| |
|
|
| T |
35374 |
attccaactcataaagaaggaataatgggagaggagag--gagaacttaaaaatgaaggagaaaaaggtggacatcgataagtgtggagttaatttggga |
35277 |
T |
|
| Q |
438 |
attggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggattagatcaaatgatgagatgcat |
535 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| |
|
|
| T |
35276 |
attggaggataattaatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcat |
35177 |
T |
|
| Q |
536 |
ggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
35176 |
gcttagccaaatgatgagatccaac |
35152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 139 - 560
Target Start/End: Original strand, 33045054 - 33045463
Alignment:
| Q |
139 |
cctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggaga |
238 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
33045054 |
cctggatgatacgatgccgcagacgacaacgacgaaggtgatgttggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacg---- |
33045149 |
T |
|
| Q |
239 |
gagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctga |
338 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||| |||||| |||||||||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
33045150 |
-----------acaaagaattttgtttgaatgtctgagagtgaggttgaagatgaacaactcaaagggggaagagatttttttgagtaaaagcaatctga |
33045238 |
T |
|
| Q |
339 |
attccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatttagga |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
33045239 |
attccaacacataaagaaggaataatgggagaggagacaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttggga |
33045338 |
T |
|
| Q |
438 |
attggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggattagatcaaatgatgagatgcat |
535 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| |
|
|
| T |
33045339 |
attggaggataattaatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcat |
33045438 |
T |
|
| Q |
536 |
ggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
| ||| ||||||||||||||||||| |
|
|
| T |
33045439 |
gcttaaccaaatgatgagatccaac |
33045463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 139 - 506
Target Start/End: Complemental strand, 10092985 - 10092641
Alignment:
| Q |
139 |
cctggctgatacgatgccgcagacgacaacggcggaggtgatgttgtaatcgagagcattggtgaagggcgacgataggagagagctgcgacgacggaga |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||| | |||||||||||||||||||||||||||| || ||| |
|
|
| T |
10092985 |
cctggctgatacgatgccgcagacgacaacgacgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacag-------------------aga |
10092905 |
T |
|
| Q |
239 |
gagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctga |
338 |
Q |
| |
|
||||||| ||| || ||||||||| ||||||||||||||||||||||||||| ||||||| |||||| |||||| ||| ||||||||| ||| |
|
|
| T |
10092904 |
gagcggcgacgttagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaacttaaaggg--aagagatttttttgagtaaaagcaatttga |
10092807 |
T |
|
| Q |
339 |
attccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatttagga |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||| | | |
|
|
| T |
10092806 |
attccaacacataaagaaggaataatgggagaggagagaa-----cttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttggaa |
10092712 |
T |
|
| Q |
438 |
attggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttga |
506 |
Q |
| |
|
|||||||||||| |||||| |||||| ||||||| ||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
10092711 |
attggaggataactaatgaatcaaaacttggataggtgcataggaaatatacatcaaatttgaaagtttga |
10092641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 206 - 314
Target Start/End: Original strand, 22000988 - 22001096
Alignment:
| Q |
206 |
ggcgacgataggagagagctgcgacgacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagg |
305 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
22000988 |
ggcgacgacaggagagagctgcggcgacggagagagcggcaacgacagagaattttgtttgaatgtctgaaagtgaggtggaagatgaacaactcaaagg |
22001087 |
T |
|
| Q |
306 |
gcgaagaga |
314 |
Q |
| |
|
| ||||||| |
|
|
| T |
22001088 |
gggaagaga |
22001096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 511 - 560
Target Start/End: Complemental strand, 8976542 - 8976493
Alignment:
| Q |
511 |
gattagatcaaatgatgagatgcatggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| |||| |||||||||||| |
|
|
| T |
8976542 |
gattagatcaaaggatgagatgcatgtttagctaaataatgagatccaac |
8976493 |
T |
|
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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 525 - 560
Target Start/End: Complemental strand, 10092636 - 10092601
Alignment:
| Q |
525 |
atgagatgcatggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10092636 |
atgagatgcatgcttagccaaatgatgagatccaac |
10092601 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 446
Target Start/End: Original strand, 30908174 - 30908233
Alignment:
| Q |
387 |
aaaatgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaattggagga |
446 |
Q |
| |
|
|||||| ||||||||||||||| || |||||||||||||||||| | ||||||||||| |
|
|
| T |
30908174 |
aaaatggaggagaaagaggtgggtatcgataagtgtggagtcaatatgagaattggagga |
30908233 |
T |
|
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Target: scaffold0096 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 512 - 560
Target Start/End: Complemental strand, 27546 - 27498
Alignment:
| Q |
512 |
attagatcaaatgatgagatgcatggttagccaaatgatgagatccaac |
560 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27546 |
attagatcaaaggatgagatgcatgcttagccaaatgatgagatccaac |
27498 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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