View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13912_high_9 (Length: 561)
Name: NF13912_high_9
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13912_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 17 - 554
Target Start/End: Complemental strand, 51215649 - 51215113
Alignment:
| Q |
17 |
acctttatactagtttgtttcggtcctggatgaaccattaacggtttggttcattcttaccgaagtagtaaaagttcattttggtttcctttcttaacag |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
51215649 |
acctttatactagtttgtttaggtcctggatgaaccattaaaggtttggttcattcttaccgaagtagtaaaagttcagtttggtttcctctcttaacag |
51215550 |
T |
|
| Q |
117 |
aaccataaacagttttagtgtttgtgtacgtgtcaatgcttcgtaaatttctgtagtttacctgctgcaaactactaatgaagttatgagcatttgctag |
216 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51215549 |
aaccataaacaattt-agtgtttgtgtacgtgtcaatgcttcataaatttctgtagtttacctgctgcaaactactaatgaagttatgagcatttgctag |
51215451 |
T |
|
| Q |
217 |
ttctgctgcagctataacttcagcctcagttgcattaccaccttttccgtaggcaatgttagctctgatggtgtcattaaacagcacaggctcttggctt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51215450 |
ttctgctgcagctataacttcagcctcagttgcattaccaccttttccataggcaatgttagctctgatggtgtcattaaacagcacaggctcttggctt |
51215351 |
T |
|
| Q |
317 |
accagtcccatttgctgcctaaaccatttaagctgtagcttttggatttctgttccatccagtttaatctgacctgaatctggatcataaaatctttgca |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51215350 |
accagtcccatttgctgcctaaaccatttaagctgtagcttttggatttctgttccatccagtttaatctgacctgaatctggatcataaaatctttgca |
51215251 |
T |
|
| Q |
417 |
acaatgagatcactgttgattttccacttccactttcacctactagagcaactgtctgattgaaacaaccaaacgttaagcttctctcttagaaaaacct |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51215250 |
acaatgagatcactgttgattttccacttccactttcacctactagagcaactgtctgattgaaacaaccaaacgttaagcttctctcttagaaaaacct |
51215151 |
T |
|
| Q |
517 |
agatggattttttgatagtgaattcttgtgagaattat |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51215150 |
agatggattttttgatagtgaattcttgtgagaattat |
51215113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 182 - 476
Target Start/End: Complemental strand, 51202431 - 51202137
Alignment:
| Q |
182 |
tgcaaactactaatgaagttatgagcatttgctagttctgctgcagctataacttcagcctcagttgcattaccaccttttccgtaggcaatgttagctc |
281 |
Q |
| |
|
|||||||||||||| || || ||||||||||||| ||||||||||||||||| || ||||| | ||||| || ||||| || || ||||| || |||| |
|
|
| T |
51202431 |
tgcaaactactaataaacttgtgagcatttgctaattctgctgcagctataatctctgcctctgatgcatctcctcctttaccatatgcaatattggctc |
51202332 |
T |
|
| Q |
282 |
tgatggtgtcattaaacagcacaggctcttggcttaccagtcccatttgctgcctaaaccatttaagctgtagcttttggatttctgttccatccagttt |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || || | |||||| | || || ||||||||||| ||||||| ||| | |
|
|
| T |
51202331 |
tgatggtgtcattaaacagcacaggctcttggcttaccagtcccatttgttgtcttagccatttcacttgaagactttggatttcttttccatcgagtgt |
51202232 |
T |
|
| Q |
382 |
aatctgacctgaatctggatcataaaatctttgcaacaatgagatcactgttgattttccacttccactttcacctactagagcaactgtctgat |
476 |
Q |
| |
|
||| || |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| || || || ||||||||||||| |
|
|
| T |
51202231 |
aatgtggcctgaatctggatcataaaatctttgtatcaatgagatcactgttgattttccacttccactttctccaacaagtgcaactgtctgat |
51202137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 173 - 474
Target Start/End: Complemental strand, 51159832 - 51159531
Alignment:
| Q |
173 |
tttacctgctgcaaactactaatgaagttatgagcatttgctagttctgctgcagctataacttcagcctcagttgcattaccaccttttccgtaggcaa |
272 |
Q |
| |
|
||||||| ||||||||||| |||||| | |||||||||||||||||||| ||||||| || ||| ||||| ||||||| || ||||||||||| |||| |
|
|
| T |
51159832 |
tttaccttctgcaaactaccaatgaactggtgagcatttgctagttctgccgcagctacaatttctgcctctgttgcatctcctccttttccgtatgcaa |
51159733 |
T |
|
| Q |
273 |
tgttagctctgatggtgtcattaaacagcacaggctcttggcttaccagtcccatttgctgcctaaaccatttaagctgtagcttttggatttctgttcc |
372 |
Q |
| |
|
| || |||| | |||||||| || || |||||||||||||||||||||||||| || || || | |||||| | ||| | | |||| |||||| |||| |
|
|
| T |
51159732 |
tattggctcgaaccgtgtcattgaaaagaacaggctcttggcttaccagtcccatctgttgtcttagccatttcacctgcatcctttgaatttctattcc |
51159633 |
T |
|
| Q |
373 |
atccagtttaatctgacctgaatctggatcataaaatctttgcaacaatgagatcactgttgattttccacttccactttcacctactagagcaactgtc |
472 |
Q |
| |
|
||| ||| |||| || ||||| || ||||||||||||||||| | ||||||||||||||||||||||||||||||||||| || || || ||||| ||| |
|
|
| T |
51159632 |
atcaagtgtaatgtgtcctgagtcaggatcataaaatctttgtagtaatgagatcactgttgattttccacttccactttctccaaccagtgcaacggtc |
51159533 |
T |
|
| Q |
473 |
tg |
474 |
Q |
| |
|
|| |
|
|
| T |
51159532 |
tg |
51159531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 173 - 474
Target Start/End: Complemental strand, 51148941 - 51148640
Alignment:
| Q |
173 |
tttacctgctgcaaactactaatgaagttatgagcatttgctagttctgctgcagctataacttcagcctcagttgcattaccaccttttccgtaggcaa |
272 |
Q |
| |
|
||||||| ||||||||||| |||||| | |||||||||||||||||||| ||||||| || ||| ||||| ||||||| || ||||||||||| |||| |
|
|
| T |
51148941 |
tttaccttctgcaaactaccaatgaactggtgagcatttgctagttctgccgcagctacaatttctgcctctgttgcatctcctccttttccgtatgcaa |
51148842 |
T |
|
| Q |
273 |
tgttagctctgatggtgtcattaaacagcacaggctcttggcttaccagtcccatttgctgcctaaaccatttaagctgtagcttttggatttctgttcc |
372 |
Q |
| |
|
| || || | | |||||||| || || | |||||||||||||||||||||||| || || || | |||||| | || | | |||| |||||| |||| |
|
|
| T |
51148841 |
tattcgcccgaaccgtgtcattgaaaagaataggctcttggcttaccagtcccatctgttgtcttagccatttcacttgcatcctttgaatttctattcc |
51148742 |
T |
|
| Q |
373 |
atccagtttaatctgacctgaatctggatcataaaatctttgcaacaatgagatcactgttgattttccacttccactttcacctactagagcaactgtc |
472 |
Q |
| |
|
||| || |||| || ||||| || || ||||| |||||||| | || |||||||||||||||||||||||||||||||| ||||| || ||||||||| |
|
|
| T |
51148741 |
atcaagagtaatgtgccctgagtcagggtcatagaatctttgtagtaacgagatcactgttgattttccacttccactttctcctacgagtgcaactgtc |
51148642 |
T |
|
| Q |
473 |
tg |
474 |
Q |
| |
|
|| |
|
|
| T |
51148641 |
tg |
51148640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 173 - 474
Target Start/End: Original strand, 29934194 - 29934495
Alignment:
| Q |
173 |
tttacctgctgcaaactactaatgaagttatgagcatttgctagttctgctgcagctataacttcagcctcagttgcattaccaccttttccgtaggcaa |
272 |
Q |
| |
|
||||||| |||||||||||||||||| | |||||||||||||||||||| || |||| || ||| || || ||||||| || ||||||||||| |||| |
|
|
| T |
29934194 |
tttaccttctgcaaactactaatgaactggtgagcatttgctagttctgccgcggctacaatttctgcttctgttgcatctcctccttttccgtatgcaa |
29934293 |
T |
|
| Q |
273 |
tgttagctctgatggtgtcattaaacagcacaggctcttggcttaccagtcccatttgctgcctaaaccatttaagctgtagcttttggatttctgttcc |
372 |
Q |
| |
|
| || |||| || |||||||| || || ||||||||||||||||| || |||||||| || || | |||||| || || ||| |||| |||||| |||| |
|
|
| T |
29934294 |
tattggctcggactgtgtcattgaaaagaacaggctcttggcttactagccccatttgttgtctcagccatttcagttgaagcctttgaatttcttttcc |
29934393 |
T |
|
| Q |
373 |
atccagtttaatctgacctgaatctggatcataaaatctttgcaacaatgagatcactgttgattttccacttccactttcacctactagagcaactgtc |
472 |
Q |
| |
|
||| || | || || ||| | | || |||||||||||||| || || || ||||||||||||||||||||||||||||| || || || ||||| ||| |
|
|
| T |
29934394 |
atcaagagttatgtgtcctaagttagggtcataaaatctttgtaataaggacatcactgttgattttccacttccactttctccaaccagggcaaccgtc |
29934493 |
T |
|
| Q |
473 |
tg |
474 |
Q |
| |
|
|| |
|
|
| T |
29934494 |
tg |
29934495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 173 - 477
Target Start/End: Original strand, 49734524 - 49734828
Alignment:
| Q |
173 |
tttacctgctgcaaactactaatgaagttatgagcatttgctagttctgctgcagctataacttcagcctcagttgcattaccaccttttccgtaggcaa |
272 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||| || |||| |
|
|
| T |
49734524 |
tttacctgctgcaaactgctaatgaacttatgagcatttgcaagttttgctgcagctataatttcagcctcagttgcattgccaccttttccatacgcaa |
49734623 |
T |
|
| Q |
273 |
tgttagctctgatggtgtcattaaacagcacaggctcttggcttaccagtcccatttgctgcctaaaccatttaagctgtagcttttggatttctgttcc |
372 |
Q |
| |
|
|||| |||| | ||||||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
49734624 |
tgttggctcgcacggtgtcattgaacagcacaggctcctgggttaccaggcccatttgctgcctaaaccatctaagttgtagcttttggatttctgttcc |
49734723 |
T |
|
| Q |
373 |
atccagtttaatctgacctgaatctggatcataaaatctttgcaacaatgagatcactgttgattttccacttccactttcacctactagagcaactgtc |
472 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
49734724 |
atccagtttaatctgaccagaatctggatcataaaatctttgcagcaatgatatcactgttgactttccacttccactttcacctactagagcaactgtc |
49734823 |
T |
|
| Q |
473 |
tgatt |
477 |
Q |
| |
|
||||| |
|
|
| T |
49734824 |
tgatt |
49734828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 173 - 477
Target Start/End: Complemental strand, 36288839 - 36288535
Alignment:
| Q |
173 |
tttacctgctgcaaactactaatgaagttatgagcatttgctagttctgctgcagctataacttcagcctcagttgcattaccaccttttccgtaggcaa |
272 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||| | || ||||||||| || | || || || ||||||| || ||||| || || | |
|
|
| T |
36288839 |
tttacctgctgcaaactactaatgaacttgtgagcatttgccatttttgctgcagcaatgatctctgcttctgttgcatcttttccctttccatatgcga |
36288740 |
T |
|
| Q |
273 |
tgttagctctgatggtgtcattaaacagcacaggctcttggcttaccagtcccatttgctgcctaaaccatttaagctgtagcttttggatttctgttcc |
372 |
Q |
| |
|
| ||||||| | ||||||||||||| |||||||||||||||||||| ||||||| ||||| |||||||||| ||| ||||||||||||||| |||| |
|
|
| T |
36288739 |
tattagctcgtaccgtgtcattaaacaacacaggctcttggcttaccaagcccattttttgccttaaccatttaacctgaagcttttggatttctattcc |
36288640 |
T |
|
| Q |
373 |
atccagtttaatctgacctgaatctggatcataaaatctttgcaacaatgagatcactgttgattttccacttccactttcacctactagagcaactgtc |
472 |
Q |
| |
|
||| | | |||| |||||||||||| | ||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||| || ||||||||| |
|
|
| T |
36288639 |
atcaactgtaatgtgacctgaatctaggtcatagaatctttgcaataatgagataactgttgattttccacttccactttctcctaccagtgcaactgtc |
36288540 |
T |
|
| Q |
473 |
tgatt |
477 |
Q |
| |
|
||||| |
|
|
| T |
36288539 |
tgatt |
36288535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 516 - 553
Target Start/End: Original strand, 49734834 - 49734871
Alignment:
| Q |
516 |
tagatggattttttgatagtgaattcttgtgagaatta |
553 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
49734834 |
tagatggattgtttgatagtgagttcttgtgagaatta |
49734871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 172 - 456
Target Start/End: Original strand, 38539827 - 38540111
Alignment:
| Q |
172 |
gtttacctgctgcaaactactaatgaagttatgagcatttgctagttctgctgcagctataacttcagcctcagttgcattaccaccttttccgtaggca |
271 |
Q |
| |
|
|||||||||||| || | ||||||||| ||| ||||| || | ||| || ||||| || | ||| |||||||||||||| ||||||||||| |||||| |
|
|
| T |
38539827 |
gtttacctgctgtaagccactaatgaatctatctgcattggccaattcagcagcagcaatgatttctgcctcagttgcattgccaccttttccataggca |
38539926 |
T |
|
| Q |
272 |
atgttagctctgatggtgtcattaaacagcacaggctcttggcttaccagtcccatttgctgcctaaaccatttaagctgtagcttttggatttctgttc |
371 |
Q |
| |
|
|| || | | || |||||||| || | || || |||||||| || || |||||||||||||| ||||| || | ||||| || | |||||| | | |
|
|
| T |
38539927 |
atattggaacgaatagtgtcattgaataatactggttcttggctcacaagacccatttgctgccttaaccactttaactgtaactgacgaatttctatcc |
38540026 |
T |
|
| Q |
372 |
catccagtttaatctgacctgaatctggatcataaaatctttgcaacaatgagatcactgttgattttccacttccactttcacc |
456 |
Q |
| |
|
|||| ||| | || | ||||||||| ||||||||||||||||| ||||| | ||||| || ||||| ||||||||||||||||| |
|
|
| T |
38540027 |
catcaagtgtgatttcacctgaatcaggatcataaaatctttgtaacaaagcaatcacagtcgatttcccacttccactttcacc |
38540111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 172 - 456
Target Start/End: Original strand, 38562045 - 38562329
Alignment:
| Q |
172 |
gtttacctgctgcaaactactaatgaagttatgagcatttgctagttctgctgcagctataacttcagcctcagttgcattaccaccttttccgtaggca |
271 |
Q |
| |
|
|||||||||||| || | ||||||||| ||| ||||| || | ||| || ||||| || | ||| |||||||||||||| ||||||||||| |||||| |
|
|
| T |
38562045 |
gtttacctgctgtaagccactaatgaatctatctgcattggccaattcagcagcagcaatgatttctgcctcagttgcattgccaccttttccataggca |
38562144 |
T |
|
| Q |
272 |
atgttagctctgatggtgtcattaaacagcacaggctcttggcttaccagtcccatttgctgcctaaaccatttaagctgtagcttttggatttctgttc |
371 |
Q |
| |
|
|| || | | || |||||||| || | || || |||||||| || || |||||||||||||| ||||| || | ||||| || | |||||| | | |
|
|
| T |
38562145 |
atattggaacgaatagtgtcattgaataatactggttcttggctcacaagacccatttgctgccttaaccactttaactgtaactgacgaatttctatcc |
38562244 |
T |
|
| Q |
372 |
catccagtttaatctgacctgaatctggatcataaaatctttgcaacaatgagatcactgttgattttccacttccactttcacc |
456 |
Q |
| |
|
|||| ||| | || | ||||||||| ||||||||||||||||| ||||| | ||||| || ||||| ||||||||||||||||| |
|
|
| T |
38562245 |
catcaagtgtgatttcacctgaatcaggatcataaaatctttgtaacaaagcaatcacagtcgatttcccacttccactttcacc |
38562329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 456
Target Start/End: Original strand, 38522701 - 38522956
Alignment:
| Q |
201 |
tatgagcatttgctagttctgctgcagctataacttcagcctcagttgcattaccaccttttccgtaggcaatgttagctctgatggtgtcattaaacag |
300 |
Q |
| |
|
|||||||||| || | ||| || ||||| || | ||| |||||||||||| | |||||||| || || ||||| || || | || |||||||| || | |
|
|
| T |
38522701 |
tatgagcattagccaattcagcagcagcaatgatttctgcctcagttgcaatgccacctttgccataagcaatattggcacgaatagtgtcattgaataa |
38522800 |
T |
|
| Q |
301 |
cacaggctcttggcttaccagtcccatttgctgcctaaaccatttaagctgtagcttttggatttctgttccatccagtttaatctgacctgaatctgga |
400 |
Q |
| |
|
|| || ||||||||||| || |||||||||||||| ||||| || | ||||| || | |||||| | ||||| ||| | || | ||||||||| ||| |
|
|
| T |
38522801 |
gactggttcttggcttacaagacccatttgctgccttaaccactttaactgtaactgacgaatttctatcccatcaagtgtgatttcacctgaatcagga |
38522900 |
T |
|
| Q |
401 |
tcataaaatctttgcaacaatgagatcactgttgattttccacttccactttcacc |
456 |
Q |
| |
|
|||||||||||||||||||| | ||||| || ||||| ||||||||||||||||| |
|
|
| T |
38522901 |
tcataaaatctttgcaacaaagcaatcacagtcgatttcccacttccactttcacc |
38522956 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 468
Target Start/End: Original strand, 33789508 - 33789576
Alignment:
| Q |
400 |
atcataaaatctttgcaacaatgagatcactgttgattttccacttccactttcacctactagagcaac |
468 |
Q |
| |
|
||||||||||||||| | |||| || ||||||||||||||||||||||| |||| ||||| ||||| |
|
|
| T |
33789508 |
atcataaaatctttgtactaatgctattgctgttgattttccacttccacttgcaccaactagtgcaac |
33789576 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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