View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13912_low_1 (Length: 1864)
Name: NF13912_low_1
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13912_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 994; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 994; E-Value: 0
Query Start/End: Original strand, 16 - 1131
Target Start/End: Original strand, 5621091 - 5622206
Alignment:
| Q |
16 |
aattgtagcgtaagtatgcataacttgtctttaagtatctactatggaatctttttcaatttttcgtcagnnnnnnn-gtccgatgacattacactggcc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
5621091 |
aattgtagcgtaagtatgcataacttgtctttaagtatctactatggaatctttttcaatttttcgtcagttttttttgtccgatgacattatactggcc |
5621190 |
T |
|
| Q |
115 |
attgataaccagataccacatgtagaactatattattggttttactttcctctttattaaaatggtgtaaaga-tgatccaaattcatctccatcaactt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5621191 |
attgataaccagataccacatgtagaactatattattggttttacttacctctttattaaaatggtgtaaagaatgatccaaattcatctccatcaactt |
5621290 |
T |
|
| Q |
214 |
tatatttcaaaatttagcgaacttaagtcacttgtaccagctgatcaatggaggtgttgtttatataaatctggtgttttaagctggttcagttttcata |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5621291 |
tatatttcaaaatttagcgaacttaagtcacttgtaccagctgatcaatggaggtgttgtttatataaatctggtgttttaagctggttcagtt--cata |
5621388 |
T |
|
| Q |
314 |
cataaatttatatcttttaacagggatgagggagtccgctggggaatacagaatggcctttatctttctagaagcacagtggtatattttaagcacaata |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5621389 |
cataaatttatatcttttaacagggatgagggagtccactggggaatacagaatggcctttatctttctagaagcacagtggtatattttaagcacaata |
5621488 |
T |
|
| Q |
414 |
acatggattctttaagagaaactttagagaacattacttccaaatataagaggaccaagaatttgaggcgttatattgtcattgaagctctctaccaggt |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5621489 |
acatggattctttaagagaaactttagagaacattacttccatatataagaggaccaagaatttgaggcgttatattgtcattgaagctctctaccaggt |
5621588 |
T |
|
| Q |
514 |
agatctcgtcgttcatgcatgctgttttatttactttacacatctgtaccgtgcttccaatggagcgcgtacaacatttaggtttaaaatcaaagagcta |
613 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
5621589 |
agatctcatcgttcatgcatgctgttatatttactttacacatctgtactgtgcttctgatggagcgtgtacaacatttaggtataaaatcaaagagcta |
5621688 |
T |
|
| Q |
614 |
taccaattgcttgcttcttgcaacttgtggtatcggtaaattgtactatatgaactactatttctgcagagatattacagtaattagaaaatgaaatttg |
713 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
5621689 |
taccaattgcttgcttcttgcaacttgtggtatcggtaaattgtactatatgaactactatttctgctgagatattacagtaattagcaaatgaaatttg |
5621788 |
T |
|
| Q |
714 |
aatatgtatttatgaaggattgtagtaaacactttgagtctgttggtgttgctgttatattggtgtctattgcgatgttgttccttaaaaaagtattact |
813 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
5621789 |
aatatgtatttatgaaggattgtagtaaacactttgagtctgttggcgttgctgttatattggtgtctattgcgatgttgttccttaaaagagtattgct |
5621888 |
T |
|
| Q |
814 |
aatctgctacttgccctggttttctcaaccattaagttgtaatagttattttttctgtagttgtcatactaacgacatctattatgctcataatatgcct |
913 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5621889 |
aatctgctacttgccctggttttctcaaccattaagttgtaatagttattttttctgtagttgtcatactaacaacatctattatgctcataatatgcct |
5621988 |
T |
|
| Q |
914 |
tacctgctgcatgcaaactaaaattgcttgatcagtaactattgacaattgtttcctcgacattttttcagaactctggccaaatagcacccttagatga |
1013 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5621989 |
tacctgctgcatgcaaactaaaattgcttgatcagtaactattgacaattgtttcctcgacattttttcagaactctggccaaatagcacccttagatga |
5622088 |
T |
|
| Q |
1014 |
gatcattaaattgaaggaaaaatatcgttttcgtattttactggatgagagcaactcatttggtgtgcttggaagttctggaagagatctcactgaacac |
1113 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5622089 |
gatcattaaattgaaggaaaaatattgttttcgtattttactggatgagagcaactcatttggtgtgcttggaagttctggaagaggtctcactgaacac |
5622188 |
T |
|
| Q |
1114 |
tatggagttccagtatgt |
1131 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
5622189 |
tatggagttccagtatgt |
5622206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 1186 - 1853
Target Start/End: Original strand, 5638469 - 5639137
Alignment:
| Q |
1186 |
aaataaattttaaattgtacttctgtttatgattagtggttgtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggcc |
1285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5638469 |
aaataaattttaaattgtacttctgtttatgattagtggttgtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggcc |
5638568 |
T |
|
| Q |
1286 |
acagaaggaggattctgcacgggaagtgcaagagttatagatcaccaagtatggtagtgtcatatgtgatactgttcataaccttcttggatttccatgt |
1385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5638569 |
acagaaggaggattctgcacgggaagtgcaagagttatagatcaccaagtatggtagtgtcatatgtgatactgttcataaccttcttggatttccatgt |
5638668 |
T |
|
| Q |
1386 |
atactgaaacactaaaagagaagaaagattgtaaatgtggaaattaagaatttacttcctccaaactcaaatttaagtnnnnnnnntagtcatggtttgt |
1485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5638669 |
atactgaaacactaaaagagaagaaagattgtaaatgtggaaattaagaatttacttcctccaaactcaaatttaagtaaaaaaaatagtcatggtttgt |
5638768 |
T |
|
| Q |
1486 |
ggtccataatatataagaaaattctaattaattttactggattactgttatatttcaattagtgttaaacaccactcaattaatgctctcatgaaacaag |
1585 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5638769 |
ggtccataatatataagaaaattctaattaattttactggattactgttatatttcaattagtgttaaacaccactcaattaatgctctcatgaaacaag |
5638868 |
T |
|
| Q |
1586 |
tttcaaaggaaatttagtga-gagaatgatagttcggagaatgcaattttcttattgcaccaagaaaaataagcaagcttaactaatattcttacttagt |
1684 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
5638869 |
tttcaaaggaaatttagtgaagagaatgatagttcggagaatgcaattttcttattgcaccaagaaaaataagcaaggttaactaatattcttaattagt |
5638968 |
T |
|
| Q |
1685 |
acgtatttagttaattttacttaaatttgagttcagagggagtgtttttcacggaacttctttcattttttcccccacgtttccttcattaatacctgaa |
1784 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5638969 |
acgtatttagttaattttacttaaatttgagttcggagggagtgtttttcacggaacttctttcattttttcccccacgtttccttcattaatacctgaa |
5639068 |
T |
|
| Q |
1785 |
tttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataaccaagtgattggttgatgatg |
1853 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5639069 |
tttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataaccaagtgattggttgatgatg |
5639137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 8e-22
Query Start/End: Original strand, 1767 - 1833
Target Start/End: Original strand, 22965261 - 22965327
Alignment:
| Q |
1767 |
ccttcattaatacctgaatttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataac |
1833 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
22965261 |
ccttcattaatacctgaatttgcaggtccgaactataaaatttgcatgattaagtgatgtgcataac |
22965327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1124 - 1165
Target Start/End: Original strand, 5638407 - 5638448
Alignment:
| Q |
1124 |
cagtatgtactaaaaagttctatttgggcgtgggtgtgtata |
1165 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5638407 |
cagtatgtactgaaaagttctatttgggcgtgggtgtgtata |
5638448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 4e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-67
Query Start/End: Original strand, 979 - 1133
Target Start/End: Complemental strand, 30634741 - 30634587
Alignment:
| Q |
979 |
tttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatatcgttttcgtattttactggatgagagcaactcatttggtg |
1078 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30634741 |
tttcagaattctggtcaaatagcacccttagatgatatcattaaattgaaggaaaaatatcggtttcgtattttactggatgagagcaactcatttggtg |
30634642 |
T |
|
| Q |
1079 |
tgcttggaagttctggaagagatctcactgaacactatggagttccagtatgtac |
1133 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
30634641 |
tgcttggaagttctggaagaggtctcactgaacactacggagttccagtatgtac |
30634587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 2e-62
Query Start/End: Original strand, 307 - 517
Target Start/End: Complemental strand, 30635428 - 30635218
Alignment:
| Q |
307 |
tttcatacataaatttatatcttttaacagggatgagggagtccgctggggaatacagaatggcctttatctttctagaagcacagtggtatattttaag |
406 |
Q |
| |
|
||||||| |||| ||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || || ||||||||| |
|
|
| T |
30635428 |
tttcatatataattttgtattttttaacagggatgaaggagtccactggggaatacagaatggcctttatctttctagaagcactgtcgtgtattttaag |
30635329 |
T |
|
| Q |
407 |
cacaataacatggattctttaagagaaactttagagaacattacttccaaatataagaggaccaagaatttgaggcgttatattgtcattgaagctctct |
506 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||| ||||||| || |||||| |||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
30635328 |
cacaatgacatggattctttagaagaaactttagagaagcttacttctaagtataagcacaccaagaatttgaggcgttatattgttgtcgaagctctct |
30635229 |
T |
|
| Q |
507 |
accaggtagat |
517 |
Q |
| |
|
||||||||||| |
|
|
| T |
30635228 |
accaggtagat |
30635218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 8e-56
Query Start/End: Original strand, 1221 - 1394
Target Start/End: Complemental strand, 30634501 - 30634326
Alignment:
| Q |
1221 |
gtggttgtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggccacagaaggaggattctgcacgggaagtgcaagagt |
1320 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30634501 |
gtggtcgtgtgctgcaggttgagaagttagatcttataactgctgctatgggacatgcattggccacagaaggaggattctgcaccggaagtgcaagagt |
30634402 |
T |
|
| Q |
1321 |
tatagatcaccaagtatggtagtgtcatatgtgatactg-ttcat-aaccttcttggatttccatgtatactgaaa |
1394 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| |||||| ||||| |||| ||| |||||||| || |||||||| |
|
|
| T |
30634401 |
tatagatcaccaggtatggtagtgtcatttgtaatactgattcataaaccaacttagatttccaagtgtactgaaa |
30634326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 4e-67; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-67
Query Start/End: Original strand, 979 - 1133
Target Start/End: Complemental strand, 21423527 - 21423373
Alignment:
| Q |
979 |
tttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatatcgttttcgtattttactggatgagagcaactcatttggtg |
1078 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
21423527 |
tttcagaattctggtcaaatagcacccttagatgatatcattaaattgaaggaaaaatatcggtttcgtattttactggatgagagcaactcatttggcg |
21423428 |
T |
|
| Q |
1079 |
tgcttggaagttctggaagagatctcactgaacactatggagttccagtatgtac |
1133 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21423427 |
tgcttggaagttctggaagaggtctcactgaacactatggagttccagtatgtac |
21423373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 5e-60
Query Start/End: Original strand, 307 - 517
Target Start/End: Complemental strand, 21424229 - 21424019
Alignment:
| Q |
307 |
tttcatacataaatttatatcttttaacagggatgagggagtccgctggggaatacagaatggcctttatctttctagaagcacagtggtatattttaag |
406 |
Q |
| |
|
||||||| |||| ||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || || ||||||||| |
|
|
| T |
21424229 |
tttcatatataattttgtattttttaacagggatgaaggagtccactggggaatacagaatggcctttatctttctagaagcactgtcgtgtattttaag |
21424130 |
T |
|
| Q |
407 |
cacaataacatggattctttaagagaaactttagagaacattacttccaaatataagaggaccaagaatttgaggcgttatattgtcattgaagctctct |
506 |
Q |
| |
|
|||||| |||||||||||||| |||||| |||||||| ||| ||| ||||||||| |||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
21424129 |
cacaatgacatggattctttagaagaaacattagagaagcttagttctaaatataagcacaccaagaatttgaggcgttatattgttgtcgaagctctct |
21424030 |
T |
|
| Q |
507 |
accaggtagat |
517 |
Q |
| |
|
||||||||||| |
|
|
| T |
21424029 |
accaggtagat |
21424019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 3e-52
Query Start/End: Original strand, 1227 - 1348
Target Start/End: Complemental strand, 21423281 - 21423160
Alignment:
| Q |
1227 |
gtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggccacagaaggaggattctgcacgggaagtgcaagagttataga |
1326 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21423281 |
gtgtgctgcaggttgagaagttagatcttataactgctgctatgggacatgcattggccacagaaggaggattctgcaccggaagtgcaagagttataga |
21423182 |
T |
|
| Q |
1327 |
tcaccaagtatggtagtgtcat |
1348 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
21423181 |
tcaccaggtatggtagtgtcat |
21423160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1769 - 1833
Target Start/End: Complemental strand, 38954654 - 38954590
Alignment:
| Q |
1769 |
ttcattaatacctgaatttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataac |
1833 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38954654 |
ttcattaatacctgaatttgcaggtccaaactataaaatttgcatgattaagcgatgtgcataac |
38954590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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