View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13912_low_11 (Length: 489)
Name: NF13912_low_11
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13912_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 31883162 - 31882749
Alignment:
| Q |
1 |
agtattcctctacaataaaagctctctatgagcttatatattcttc------------tccaacgagttcaaatttcccccctaaggaaattatctcata |
88 |
Q |
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| T |
31883162 |
agtattcctctacaataaaagctctctatgagcttatatattcttcgacaataaattctccaacgagttcaaatttcccccctaaggaaattatcccata |
31883063 |
T |
|
| Q |
89 |
actatgaaactttcatccttcacaaacataaagcttctcaaagtcatcacccttcactccgagaagatacaaacgacaacgacaaagcatatgtaagaag |
188 |
Q |
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| T |
31883062 |
actatgaaactttcatccttcacaaacataaagcttctcaaagtcatcacccttcactccgagaagatacaaacgacaacgacaaagcatatgtaagaag |
31882963 |
T |
|
| Q |
189 |
acaacaaatggtgggtaacaacaatcaaagggaacgtaactcctaaatgcaaatgacaatgaaacttcatatgatgaaaatcctataactttgtattttc |
288 |
Q |
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| T |
31882962 |
acaacaaatggtgggtaacaacaatcaaagggtacgtaactcctaaatgcaaatgacaatgaaacttcatatgatgaaaatcctataactttgtattttc |
31882863 |
T |
|
| Q |
289 |
gcaagcgcacacacaaaaaacataaaagggtgagtagacaaaaatcatgaaagacaaagcatagataagaaaactattgaaaatattcatataaattaaa |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31882862 |
gcaagcgcacacacaaaaaacataaaagggtgagtagacaaaaatcatgaaagacaaagcatagataagaaaactattgaaaatattcacataaattaaa |
31882763 |
T |
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| Q |
389 |
taatgatttatgta |
402 |
Q |
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| T |
31882762 |
taatgatttatgta |
31882749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 425 - 488
Target Start/End: Complemental strand, 31882632 - 31882569
Alignment:
| Q |
425 |
tggcatattaacgattaatcatatgattaacattttaaaaatagagtaaattacactcccctcc |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
31882632 |
tggcatattaacgattaatcatatgattaacattttaaaaatagagaaaattacactctcctcc |
31882569 |
T |
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