View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13912_low_16 (Length: 457)

Name: NF13912_low_16
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13912_low_16
NF13912_low_16
[»] chr5 (2 HSPs)
chr5 (4-438)||(19917682-19918117)
chr5 (35-363)||(24666311-24666639)
[»] chr8 (1 HSPs)
chr8 (35-440)||(22712298-22712702)
[»] chr2 (2 HSPs)
chr2 (35-386)||(25517689-25518040)
chr2 (35-189)||(23810452-23810606)
[»] scaffold0039 (1 HSPs)
scaffold0039 (132-440)||(48877-49185)
[»] chr7 (3 HSPs)
chr7 (218-440)||(13271685-13271907)
chr7 (128-231)||(9022825-9022928)
chr7 (35-138)||(14163627-14163730)
[»] chr4 (1 HSPs)
chr4 (154-374)||(9143685-9143905)
[»] chr6 (2 HSPs)
chr6 (41-183)||(16145953-16146095)
chr6 (168-231)||(11744083-11744146)
[»] chr3 (3 HSPs)
chr3 (317-375)||(14145153-14145211)
chr3 (314-376)||(8989823-8989885)
chr3 (112-207)||(14689963-14690058)


Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 4 - 438
Target Start/End: Complemental strand, 19918117 - 19917682
Alignment:
Q  4 aggcaaaggaataacttcaatacatttagtaaaagtccaacctctaaacgaccaagattttactatggagtgtaattcgcttgcaagtacacgttgaatc 103  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19918117 aggcaaaggaatgacttcaatccatttagtaaaagtccaacctctaaacggccaagattttactatggagtgtaattcgcttgcaagtacacgttgaatc 19918018  T
Q  104 cccccatgtttttggcactcttgacaccctttt-gcgaactcaatgcggtttttcaacatggatgggcaatacaagccttgtcgaaatattagcaatttc 202  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  19918017 cccccatgtttttggcactcttgacaccctttttgcgaactcaatgcggtctttcaacatggatggccaatacaagccttgtcgaaatattagcaatatc 19917918  T
Q  203 attttatgtcatgcctgatgagaaccacaacctccaccatgtaccccagaaacggctagataagcctcattttcattgatgcatttaagtaaaatacttt 302  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  19917917 attttatgtcatgcctgatgagaaccgcaacctccaccatgtaccccagaaacggctagataagcctcattttcattgatgcatttaagtaaaatacctt 19917818  T
Q  303 cgacaattttcttaaacaactcatttccaatgatcacatagcttaaggctctatatctagtctttcgactaactgcgcctgatgaattcttagggcactc 402  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  19917817 cgacagttttcttaaacaactcatttccaatgatcacatagcttaaggctctatatctagtctttcgactaactacgcctgatggattcttagggcactc 19917718  T
Q  403 tacgattggttttctccaatcattatctgacaaatt 438  Q
    ||||||||||||||||||||||||||||||||||||    
T  19917717 tacgattggttttctccaatcattatctgacaaatt 19917682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 35 - 363
Target Start/End: Original strand, 24666311 - 24666639
Alignment:
Q  35 aaagtccaacctctaaacgaccaagattttactatggagtgtaattcgcttgcaagtacacgttgaatccccccatgtttttggcactcttgacaccctt 134  Q
    |||| |||||||||||| |  |||| ||||| |||||| |||||||  |||||| ||||| | ||||| ||  ||||||| ||||||||||| |||||||    
T  24666311 aaagcccaacctctaaatggtcaaggttttattatggaatgtaatttacttgcaggtacatgctgaattcctgcatgtttctggcactcttggcaccctt 24666410  T
Q  135 ttgcgaactcaatgcggtttttcaacatggatgggcaatacaagccttgtcgaaatattagcaatttcattttatgtcatgcctgatgagaaccacaacc 234  Q
    |||| |||||||||| || |||||| |||||||| |||||||| |||||||||| ||||| | ||||||||||||| | ||| ||||||||| ||||| |    
T  24666411 ttgcaaactcaatgcagtctttcaaaatggatggccaatacaacccttgtcgaagtattaaccatttcattttatgacctgcttgatgagaatcacaagc 24666510  T
Q  235 tccaccatgtaccccagaaacggctagataagcctcattttcattgatgcatttaagtaaaatactttcgacaattttcttaaacaactcatttccaatg 334  Q
     |||| |||||||| ||||||  |||  |||||||||||||| ||||||||  |||||||||    ||| ||| ||||||||||||| ||| ||| ||||    
T  24666511 cccactatgtaccctagaaacatctacgtaagcctcattttccttgatgcacgtaagtaaaacctcttcaacagttttcttaaacaattcagttcaaatg 24666610  T
Q  335 atcacatagcttaaggctctatatctagt 363  Q
    ||||||||| ||||||||||||| |||||    
T  24666611 atcacatagattaaggctctatagctagt 24666639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 35 - 440
Target Start/End: Complemental strand, 22712702 - 22712298
Alignment:
Q  35 aaagtccaacctctaaacgaccaagattttactatggagtgtaattcgcttgcaagtacacgttgaatccccccatgtttttggcactcttgacaccctt 134  Q
    |||||| ||||| |||||  ||||| |||| | |||||||||||||  |||||| ||||||||||||||| | | || | |||||||||||| |||||||    
T  22712702 aaagtcgaacctataaacagccaaggttttcccatggagtgtaattaacttgcaggtacacgttgaatcctcgcgtgctattggcactcttggcaccctt 22712603  T
Q  135 ttgcgaactcaatgcggtttttcaacatggatgggcaatacaagccttgtcgaaatattagcaatttcattttatgtcatgcctgatgagaaccacaacc 234  Q
    || | |||||||||| || |||||| |||||||| |||||||| |||||||||||||||| | ||||||||||||| | ||| ||||||||||||||| |    
T  22712602 tttcaaactcaatgcagtctttcaagatggatggccaatacaaaccttgtcgaaatattaaccatttcattttatgacctgcttgatgagaaccacaatc 22712503  T
Q  235 tccaccatgtaccccagaaacggctagataagcctcattttcattgatgcatttaagtaaaatactttcgacaattttcttaaacaactcatttccaatg 334  Q
    || || ||||||| |||||||||||| |||||||||||||||||| ||||||| ||| ||||| | ||   || |||||||||||| |||||||||||||    
T  22712502 tcgactatgtacctcagaaacggcta-ataagcctcattttcattcatgcattcaagaaaaatgccttaagcacttttcttaaacagctcatttccaatg 22712404  T
Q  335 atcacatagcttaaggctctatatctagtctttcgactaactgcgcctgatgaattcttagggcactctacgattggttttctccaatcattatctgaca 434  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| | || ||||  |||||||||||||||||||||||| |||||    
T  22712403 atcacatagcttaaggctctatatctagtctttcgacaaactgtgcctgatggattctcaaggtactcagcgattggttttctccaatcattatttgaca 22712304  T
Q  435 aattgt 440  Q
    ||||||    
T  22712303 aattgt 22712298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 35 - 386
Target Start/End: Complemental strand, 25518040 - 25517689
Alignment:
Q  35 aaagtccaacctctaaacgaccaagattttactatggagtgtaattcgcttgcaagtacacgttgaatccccccatgtttttggcactcttgacaccctt 134  Q
    |||| |||||||||||||| ||||| |||||||||||| |||||||| |||||| | ||||||||||  | | |||||| |||||||| |||| ||||||    
T  25518040 aaagcccaacctctaaacggccaaggttttactatggaatgtaattcacttgcaggcacacgttgaaatctcgcatgttattggcacttttgataccctt 25517941  T
Q  135 ttgcgaactcaatgcggtttttcaacatggatgggcaatacaagccttgtcgaaatattagcaatttcattttatgtcatgcctgatgagaaccacaacc 234  Q
    |||  ||||||||||  | ||||||||| ||||| |||||||| |||||||||||||||| | |||||||||| || |  || | ||| ||||||||| |    
T  25517940 ttgaaaactcaatgcaatctttcaacatagatggccaatacaaaccttgtcgaaatattaaccatttcattttgtgacccgcttaatgggaaccacaagc 25517841  T
Q  235 tccaccatgtaccccagaaacggctagataagcctcattttcattgatgcatttaagtaaaatactttcgacaattttcttaaacaactcatttccaatg 334  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| | ||||  | ||||||||||||| |||||||||| |    
T  25517840 tccaccatgtaccctagaaacggctatataagcctcattttcattgatgcatttaagtaaaatgccttcggtagttttcttaaacaattcatttccaacg 25517741  T
Q  335 atcacatagcttaaggctctatatctagtctttcgactaactgcgcctgatg 386  Q
    ||||||||||||||||||||||||||||||||| || ||||||||| |||||    
T  25517740 atcacatagcttaaggctctatatctagtcttttgagtaactgcgcttgatg 25517689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 35 - 189
Target Start/End: Original strand, 23810452 - 23810606
Alignment:
Q  35 aaagtccaacctctaaacgaccaagattttactatggagtgtaattcgcttgcaagtacacgttgaatccccccatgtttttggcactcttgacaccctt 134  Q
    |||| ||||||||| || | ||||| ||| ||||| || ||||| || |||||  | |||||||||||||| ||||||||||||||| |||| || ||||    
T  23810452 aaagcccaacctctgaatggccaaggtttgactatcgaatgtaactcacttgctggcacacgttgaatcccaccatgtttttggcacccttggcaacctt 23810551  T
Q  135 ttgcgaactcaatgcggtttttcaacatggatgggcaatacaagccttgtcgaaa 189  Q
    | |  || || ||||  | ||||||||||| ||| ||||| | ||||||||||||    
T  23810552 tggaaaattctatgcaatctttcaacatggttggccaatatacgccttgtcgaaa 23810606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 132 - 440
Target Start/End: Complemental strand, 49185 - 48877
Alignment:
Q  132 cttttgcgaactcaatgcggtttttcaacatggatgggcaatacaagccttgtcgaaatattagcaatttcattttatgtcatgcctgatgagaaccaca 231  Q
    ||||||| |||||||||  || ||||||||||||||| |||||||| ||||||| ||||||||   ||||||||||||| | ||| |||||||||  |||    
T  49185 cttttgcaaactcaatgtagtctttcaacatggatggccaatacaacccttgtcaaaatattaatcatttcattttatgacttgcttgatgagaaataca 49086  T
Q  232 acctccaccatgtaccccagaaacggctagataagcctcattttcattgatgcatttaagtaaaatactttcgacaattttcttaaacaactcatttcca 331  Q
      |||||| ||||||||||||||  ||||| ||||||| | | ||||| ||||| ||||||||||  | ||| ||  ||||||||||||| |||||||||    
T  49085 tgctccactatgtaccccagaaatagctaggtaagccttaatctcatttatgcacttaagtaaaactccttcaacggttttcttaaacaattcatttcca 48986  T
Q  332 atgatcacatagcttaaggctctatatctagtctttcgactaactgcgcctgatgaattcttagggcactctacgattggttttctccaatcattatctg 431  Q
    |||||||||||||||| || | ||||||||||||||||| ||| || |||||| | ||||| | || | |||||||||||||||||||||||||||| ||    
T  48985 atgatcacatagcttagggttttatatctagtctttcgaataattgtgcctgacggattctcaaggtattctacgattggttttctccaatcattatttg 48886  T
Q  432 acaaattgt 440  Q
    |||||||||    
T  48885 acaaattgt 48877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 5e-63; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 218 - 440
Target Start/End: Original strand, 13271685 - 13271907
Alignment:
Q  218 tgatgagaaccacaacctccaccatgtaccccagaaacggctagataagcctcattttcattgatgcatttaagtaaaatactttcgacaattttcttaa 317  Q
    ||||||||||||||| ||||  ||||||||||||||||  ||||||||||||||||||||||||||||||||||||| || | ||| ||| |||||||||    
T  13271685 tgatgagaaccacaaactcctacatgtaccccagaaacaactagataagcctcattttcattgatgcatttaagtaatatgccttcaacagttttcttaa 13271784  T
Q  318 acaactcatttccaatgatcacatagcttaaggctctatatctagtctttcgactaactgcgcctgatgaattcttagggcactctacgattggttttct 417  Q
    | || ||||| | || ||||||||| |||||| ||||||||||||||||||||| ||||| |||||||| ||||| | || |||||||||||||||||||    
T  13271785 ataattcattactaacgatcacataccttaagactctatatctagtctttcgaccaactgtgcctgatggattctcaaggtactctacgattggttttct 13271884  T
Q  418 ccaatcattatctgacaaattgt 440  Q
    |||||  ||||||||||||||||    
T  13271885 ccaattgttatctgacaaattgt 13271907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 128 - 231
Target Start/End: Complemental strand, 9022928 - 9022825
Alignment:
Q  128 cacccttttgcgaactcaatgcggtttttcaacatggatgggcaatacaagccttgtcgaaatattagcaatttcattttatgtcatgcctgatgagaac 227  Q
    ||||||||||| || ||||||| || ||| ||||||||||  |||||||| |||||||||||||||| | ||||||||||||| ||||  |||||||| |    
T  9022928 cacccttttgcaaattcaatgcagtcttttaacatggatgaccaatacaacccttgtcgaaatattaaccatttcattttatgacatgtttgatgagagc 9022829  T
Q  228 caca 231  Q
    ||||    
T  9022828 caca 9022825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 138
Target Start/End: Original strand, 14163627 - 14163730
Alignment:
Q  35 aaagtccaacctctaaacgaccaagattttactatggagtgtaattcgcttgcaagtacacgttgaatccccccatgtttttggcactcttgacaccctt 134  Q
    |||| |||||||||||||| ||||| ||| | ||| |||||||| || |||||  | |||||||| |||||  |||| |||| ||||||||| || ||||    
T  14163627 aaagcccaacctctaaacggccaaggtttaattatcgagtgtaaatcacttgctggcacacgttggatcccagcatgcttttcgcactcttggcatcctt 14163726  T
Q  135 ttgc 138  Q
    ||||    
T  14163727 ttgc 14163730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 154 - 374
Target Start/End: Complemental strand, 9143905 - 9143685
Alignment:
Q  154 tttcaacatggatgggcaatacaagccttgtcgaaatattagcaatttcattttatgtcatgcctgatgagaaccacaacctccaccatgtaccccagaa 253  Q
    |||||||||  |||| |||||||| ||||||| ||||  || ||||||||||||||  | | | | ||||||||||||  |||||| | |||||||||||    
T  9143905 tttcaacatatatggccaatacaaaccttgtcaaaattgtaacaatttcattttataaccttcttaatgagaaccacatgctccactacgtaccccagaa 9143806  T
Q  254 acggctagataagcctcattttcattgatgcatttaagtaaaatactttcgacaattttcttaaacaactcatttccaatgatcacatagcttaaggctc 353  Q
    || ||||| ||||| ||||| ||||||||||||||||||||||  | ||  ||| ||||||||||||| |  |||||||||| |||||||||||||||||    
T  9143805 acagctaggtaagcttcattctcattgatgcatttaagtaaaactcctttaacagttttcttaaacaatttgtttccaatgaccacatagcttaaggctc 9143706  T
Q  354 tatatctagtctttcgactaa 374  Q
    | ||||  |||||||||||||    
T  9143705 tgtatcacgtctttcgactaa 9143685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 183
Target Start/End: Original strand, 16145953 - 16146095
Alignment:
Q  41 caacctctaaacgaccaagattttactatggagtgtaattcgcttgcaagtacacgttgaatccccccatgtttttggcactcttgacacccttttgcga 140  Q
    ||||||||||| |  |||| ||||| |||||| |||||||| |||||| |||||  |||||| ||  ||||||| |||||||||||||| |||||||| |    
T  16145953 caacctctaaatggtcaagtttttattatggaatgtaattcacttgcaggtacatattgaattcctgcatgtttctggcactcttgacatccttttgcaa 16146052  T
Q  141 actcaatgcggtttttcaacatggatgggcaatacaagccttg 183  Q
    ||||||||| || |||||  ||||||   |||||||| |||||    
T  16146053 actcaatgcagtctttcacaatggatatccaatacaacccttg 16146095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 11744083 - 11744146
Alignment:
Q  168 ggcaatacaagccttgtcgaaatattagcaatttcattttatgtcatgcctgatgagaaccaca 231  Q
    ||||||||||   |||||||||||||| | |||| |||||||||| |||| |||||||||||||    
T  11744083 ggcaatacaatatttgtcgaaatattaaccattttattttatgtcctgccagatgagaaccaca 11744146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 317 - 375
Target Start/End: Complemental strand, 14145211 - 14145153
Alignment:
Q  317 aacaactcatttccaatgatcacatagcttaaggctctatatctagtctttcgactaac 375  Q
    |||||||||||| |||  |||||||||||||||||||||||| |||| |||||||||||    
T  14145211 aacaactcatttacaacaatcacatagcttaaggctctatatttagtttttcgactaac 14145153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 376
Target Start/End: Original strand, 8989823 - 8989885
Alignment:
Q  314 ttaaacaactcatttccaatgatcacatagcttaaggctctatatctagtctttcgactaact 376  Q
    ||||||||| |||||| |||||| ||||| ||||||||||| ||  |||||||||||||||||    
T  8989823 ttaaacaacccatttctaatgataacataacttaaggctctgtacttagtctttcgactaact 8989885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 14689963 - 14690058
Alignment:
Q  112 tttttggcactcttgacacccttttgcgaactcaatgcggtttttcaacatggatgggcaatacaagccttgtcgaaatattagcaatttcatttt 207  Q
    |||||||||  |||| || ||||||||||| || |||| || ||| | ||| | ||| ||||||||||||||||||||||  ||| ||||||||||    
T  14689963 tttttggcatccttggcatccttttgcgaattctatgcagtctttgagcatagttggccaatacaagccttgtcgaaataagagccatttcatttt 14690058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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