View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13912_low_17 (Length: 455)

Name: NF13912_low_17
Description: NF13912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13912_low_17
NF13912_low_17
[»] chr8 (9 HSPs)
chr8 (54-439)||(8551625-8552009)
chr8 (18-65)||(2001762-2001810)
chr8 (18-77)||(15561938-15561998)
chr8 (18-77)||(33888963-33889023)
chr8 (18-68)||(11653744-11653795)
chr8 (18-68)||(36473082-36473133)
chr8 (20-77)||(41322646-41322704)
chr8 (21-68)||(29314117-29314165)
chr8 (18-46)||(34392223-34392251)
[»] chr6 (3 HSPs)
chr6 (17-68)||(7646807-7646859)
chr6 (24-77)||(25935629-25935683)
chr6 (18-46)||(28898438-28898466)
[»] chr5 (9 HSPs)
chr5 (18-77)||(4391869-4391929)
chr5 (18-77)||(37093935-37093995)
chr5 (18-77)||(40925950-40926010)
chr5 (18-67)||(32891289-32891339)
chr5 (17-65)||(34286707-34286756)
chr5 (18-77)||(8692623-8692683)
chr5 (18-47)||(3456867-3456896)
chr5 (18-47)||(6614301-6614330)
chr5 (18-65)||(228138-228186)
[»] chr4 (9 HSPs)
chr4 (18-77)||(17847566-17847626)
chr4 (18-77)||(18375415-18375475)
chr4 (18-77)||(54358227-54358287)
chr4 (20-77)||(41878633-41878691)
chr4 (18-68)||(24683191-24683242)
chr4 (18-67)||(23348147-23348197)
chr4 (20-77)||(37674024-37674082)
chr4 (17-46)||(41497949-41497978)
chr4 (18-46)||(47281588-47281616)
[»] chr3 (11 HSPs)
chr3 (18-77)||(38176413-38176473)
chr3 (18-68)||(521797-521848)
chr3 (18-68)||(36517629-36517680)
chr3 (18-68)||(50612907-50612958)
chr3 (18-77)||(20912282-20912342)
chr3 (18-77)||(23643003-23643063)
chr3 (18-68)||(1561288-1561339)
chr3 (18-56)||(22650440-22650479)
chr3 (17-77)||(39145365-39145426)
chr3 (21-77)||(45166344-45166401)
chr3 (17-68)||(52546856-52546908)
[»] chr2 (10 HSPs)
chr2 (18-77)||(3810293-3810353)
chr2 (18-77)||(19899034-19899094)
chr2 (18-68)||(25415028-25415079)
chr2 (18-68)||(41464932-41464983)
chr2 (18-77)||(14941011-14941071)
chr2 (18-77)||(28716341-28716401)
chr2 (18-77)||(13686108-13686168)
chr2 (23-58)||(3377049-3377084)
chr2 (18-47)||(28429396-28429425)
chr2 (18-66)||(36690856-36690905)
[»] chr1 (9 HSPs)
chr1 (18-77)||(9098593-9098653)
chr1 (17-77)||(47550905-47550966)
chr1 (18-77)||(31032721-31032781)
chr1 (18-68)||(34476014-34476065)
chr1 (18-77)||(45010314-45010374)
chr1 (18-67)||(1270286-1270336)
chr1 (18-47)||(4624460-4624489)
chr1 (18-65)||(34808051-34808099)
chr1 (17-77)||(42480235-42480298)
[»] chr7 (5 HSPs)
chr7 (18-67)||(27425787-27425837)
chr7 (18-68)||(23991983-23992034)
chr7 (18-67)||(8307637-8307687)
chr7 (18-46)||(22326973-22327001)
chr7 (18-46)||(42195492-42195520)


Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 54 - 439
Target Start/End: Original strand, 8551625 - 8552009
Alignment:
Q  54 tgtcttgaaaaattcataatgctannnnnnnnnnagagaaatagcattttcctaaataaaatagcttaaatgtatttggaagatacaatgacatattaac 153  Q
    ||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8551625 tgtcttgaaaaattcataatgctattttttttttagagaaatagcattttcctaaataaaatagcttaaatgtatttggaagatacaatgacatattaac 8551724  T
Q  154 acttgnnnnnnngg-tacaagacacgtgttttctttttctaatattaattaatatatgtaatgtgaactacctttgcatagttgcattgtctacacatat 252  Q
    |||||       || |||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  8551725 acttgtttttttgggtacaagacacgtgttttcttttcctaatat--attaatatatgtaatgtgaactacctttgcatagttgcattgtctgcgcatat 8551822  T
Q  253 ttgaacaattatttcaaatataaatatgatcaaatattctagatcaagttcatatttttcatgctttgaccaagctcaaaccaatgcagaattaggagtg 352  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8551823 ttgaacaattatttcaaatataaatatcatcaaatattctagatcaagttcatatttttcatgctttgaccaagttcaaaccaatgcagaattaggagtg 8551922  T
Q  353 tggatatcctagatgccagcaatgaatcaaatatatattttcattgagaaagtttgcctcctacagagatcttcctccagattatat 439  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8551923 tggatatcctagatgccagcaatgaatcaaatatatattttcattgagaaagtttgcctcctacagagatcttcctccagattatat 8552009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 2001762 - 2001810
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaactt-gcagctgtgtcttgaaaaa 65  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  2001762 tgaacaaataaatcatgtaattaaaacttggcagctgtgtcttgaaaaa 2001810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 15561998 - 15561938
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattcataatgcta 77  Q
    |||||||||||||||| ||||||||||||| || |||| ||||||||||||| | ||||||    
T  15561998 tgaacaaataaatcatacaattaaaacttgccaactgtatcttgaaaaattcttgatgcta 15561938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 33888963 - 33889023
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattcataatgcta 77  Q
    ||||||||||||| |||||||||||||||| ||| ||| ||||||||||||| | ||||||    
T  33888963 tgaacaaataaattatgcaattaaaacttgtcagttgtttcttgaaaaattcttgatgcta 33889023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 11653795 - 11653744
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattc 68  Q
    ||||||||||||||||| |||||||||||| |||| ||||||| ||||||||    
T  11653795 tgaacaaataaatcatgtaattaaaacttgtcagccgtgtcttaaaaaattc 11653744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 36473133 - 36473082
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaactt-gcagctgtgtcttgaaaaattc 68  Q
    |||||||||||||||||||||||||||||  ||  |||||||||||||||||    
T  36473133 tgaacaaataaatcatgcaattaaaacttaccaattgtgtcttgaaaaattc 36473082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 41322646 - 41322704
Alignment:
Q  20 aacaaataaatcatgcaattaaaacttgc-agctgtgtcttgaaaaattcataatgcta 77  Q
    ||||| ||||||||||||||||||||||| | || ||||||||||||||| | ||||||    
T  41322646 aacaattaaatcatgcaattaaaacttgctaactatgtcttgaaaaattcttgatgcta 41322704  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 29314117 - 29314165
Alignment:
Q  21 acaaataaatcatgcaattaaaactt-gcagctgtgtcttgaaaaattc 68  Q
    |||||||||| |||||||||||||||  || ||||||||||||||||||    
T  29314117 acaaataaataatgcaattaaaacttaccaactgtgtcttgaaaaattc 29314165  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 34392223 - 34392251
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaactt 46  Q
    |||||||||||||||||||||||||||||    
T  34392223 tgaacaaataaatcatgcaattaaaactt 34392251  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 7646859 - 7646807
Alignment:
Q  17 atgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattc 68  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  7646859 atgaacaaataaatcatgcaattaaaacttgccagatgtgtcttgaaaaattc 7646807  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 25935629 - 25935683
Alignment:
Q  24 aataaatcatgcaattaaaacttgc-agctgtgtcttgaaaaattcataatgcta 77  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||| | ||||||    
T  25935629 aataaatcatgtaattaaaacttgccagctgtgtcttgaaaaattcttgatgcta 25935683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 28898466 - 28898438
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaactt 46  Q
    |||||||||||||||||||||||||||||    
T  28898466 tgaacaaataaatcatgcaattaaaactt 28898438  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 4391929 - 4391869
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattcataatgcta 77  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||| | ||||||    
T  4391929 tgaacaaataaattatgcaattaaaacttgccagctgtgtcttgaaaaattcttgatgcta 4391869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 37093995 - 37093935
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattcataatgcta 77  Q
    ||||||||||||| |||||||||||||||| || |||||||||||||||||| | ||||||    
T  37093995 tgaacaaataaattatgcaattaaaacttgtcaactgtgtcttgaaaaattcttgatgcta 37093935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 40925950 - 40926010
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattcataatgcta 77  Q
    |||||||||||||||| ||||||||||||| ||| ||||||||||||||||| | ||||||    
T  40925950 tgaacaaataaatcatacaattaaaacttgtcagatgtgtcttgaaaaattcttgatgcta 40926010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 32891289 - 32891339
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaatt 67  Q
    |||||||||||||||||||||||||| ||| || |||||||||||||||||    
T  32891289 tgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaatt 32891339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 34286707 - 34286756
Alignment:
Q  17 atgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaa 65  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  34286707 atgaacaaataaatcatgcaattaaaatttgtcagttgtgtcttgaaaaa 34286756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 8692623 - 8692683
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattcataatgcta 77  Q
    |||| ||||||||||||||||||||| ||| |||||||||||||||| |||| | ||||||    
T  8692623 tgaataaataaatcatgcaattaaaatttgtcagctgtgtcttgaaagattcttgatgcta 8692683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 3456867 - 3456896
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg 47  Q
    ||||||||||||||||||||||||||||||    
T  3456867 tgaacaaataaatcatgcaattaaaacttg 3456896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 6614330 - 6614301
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg 47  Q
    ||||||||||||||||||||||||||||||    
T  6614330 tgaacaaataaatcatgcaattaaaacttg 6614301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 228138 - 228186
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaa 65  Q
    |||||||||| |||||||||||||||||||  || ||||||||||||||    
T  228138 tgaacaaatatatcatgcaattaaaacttgtaagttgtgtcttgaaaaa 228186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 17847626 - 17847566
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattcataatgcta 77  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||| | ||||||    
T  17847626 tgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgcta 17847566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 18375475 - 18375415
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattcataatgcta 77  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||| | ||||||    
T  18375475 tgaacaaataaatcatgcaattaaaacttgccagttgtgtcttgaaaaattcttgatgcta 18375415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 54358227 - 54358287
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattcataatgcta 77  Q
    |||||||||||||||||||||||||||||| || || ||||||||||||||| | ||||||    
T  54358227 tgaacaaataaatcatgcaattaaaacttgccaactatgtcttgaaaaattcttgatgcta 54358287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 41878633 - 41878691
Alignment:
Q  20 aacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattcataatgcta 77  Q
    |||||||||||||||||||||||||||| ||| | ||||||||||||||| | ||||||    
T  41878633 aacaaataaatcatgcaattaaaacttgtcagttatgtcttgaaaaattcttgatgcta 41878691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 24683191 - 24683242
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaactt-gcagctgtgtcttgaaaaattc 68  Q
    |||||||||||||||||||||||||||||  ||  |||||||||||||||||    
T  24683191 tgaacaaataaatcatgcaattaaaacttatcaagtgtgtcttgaaaaattc 24683242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 23348197 - 23348147
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaatt 67  Q
    |||||||||||||||||||||||||||||| | | ||| ||||||||||||    
T  23348197 tgaacaaataaatcatgcaattaaaacttgtcggttgtttcttgaaaaatt 23348147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 37674082 - 37674024
Alignment:
Q  20 aacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattcataatgcta 77  Q
    |||||||||||||||||||||||||||| ||   |||||||||||||||| | ||||||    
T  37674082 aacaaataaatcatgcaattaaaacttgtcacacgtgtcttgaaaaattcttgatgcta 37674024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 41497978 - 41497949
Alignment:
Q  17 atgaacaaataaatcatgcaattaaaactt 46  Q
    ||||||||||||||||||||||||||||||    
T  41497978 atgaacaaataaatcatgcaattaaaactt 41497949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 47281616 - 47281588
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaactt 46  Q
    |||||||||||||||||||||||||||||    
T  47281616 tgaacaaataaatcatgcaattaaaactt 47281588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 38176473 - 38176413
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattcataatgcta 77  Q
    |||||||||||| ||||||||||||||||| || |||||||||||||||||| ||||||||    
T  38176473 tgaacaaataaaacatgcaattaaaacttgccaactgtgtcttgaaaaattcttaatgcta 38176413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 521848 - 521797
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattc 68  Q
    |||||||||||||||||||||||||||||| || ||||||||| ||||||||    
T  521848 tgaacaaataaatcatgcaattaaaacttgacaactgtgtcttaaaaaattc 521797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 36517629 - 36517680
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattc 68  Q
    |||||||||||||||||||||||||||||| || |||||| |||||||||||    
T  36517629 tgaacaaataaatcatgcaattaaaacttgccaactgtgttttgaaaaattc 36517680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 50612958 - 50612907
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattc 68  Q
    ||||||||||||| |||||||||||||||| ||||||||| |||||||||||    
T  50612958 tgaacaaataaattatgcaattaaaacttgtcagctgtgtattgaaaaattc 50612907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 20912282 - 20912342
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaactt-gcagctgtgtcttgaaaaattcataatgcta 77  Q
    |||||||||||||||||||||||||||||  ||||| |||||| |||||||| | ||||||    
T  20912282 tgaacaaataaatcatgcaattaaaacttatcagctatgtctttaaaaattcttgatgcta 20912342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 23643063 - 23643003
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattcataatgcta 77  Q
    ||||||||||||| ||| |||||||| ||| ||||||||||||||||||||| | ||||||    
T  23643063 tgaacaaataaattatggaattaaaatttgtcagctgtgtcttgaaaaattcttgatgcta 23643003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 1561339 - 1561288
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattc 68  Q
    |||||||||||||||||||||| ||||||| |||||||||||  ||||||||    
T  1561339 tgaacaaataaatcatgcaattgaaacttgtcagctgtgtctgaaaaaattc 1561288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 22650479 - 22650440
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttgc-agctgtgt 56  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  22650479 tgaacaaataaatcatgcaattaaaacttgcgagctgtgt 22650440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 39145365 - 39145426
Alignment:
Q  17 atgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattcataatgcta 77  Q
    ||||||||| ||||||| ||||||||||||| || ||||||||||| |||||| | ||||||    
T  39145365 atgaacaaagaaatcatacaattaaaacttgacaactgtgtcttgacaaattcttgatgcta 39145426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 45166344 - 45166401
Alignment:
Q  21 acaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattcataatgcta 77  Q
    ||||||||||||||||||||||| ||| || ||| |||||||||||||| | ||||||    
T  45166344 acaaataaatcatgcaattaaaatttgccaactgcgtcttgaaaaattcttgatgcta 45166401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 52546856 - 52546908
Alignment:
Q  17 atgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattc 68  Q
    |||||||||||||| ||||||||||||||||  || ||||||||| |||||||    
T  52546856 atgaacaaataaattatgcaattaaaacttgtaaggtgtgtcttggaaaattc 52546908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 3810353 - 3810293
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattcataatgcta 77  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||||||    
T  3810353 tgaacaaataaatcatgcaattaaaacttgccagctgtgtcttgaaaatttcttgatgcta 3810293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 19899034 - 19899094
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattcataatgcta 77  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||| | ||||||    
T  19899034 tgaacaaataaatcatgcaattaaaacttgccagttgtgtcttgaaaaattcgtgatgcta 19899094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 25415028 - 25415079
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaactt-gcagctgtgtcttgaaaaattc 68  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  25415028 tgaacaaataaatcatgcaattaaaacttatcagctgtgtcttgaaaaattc 25415079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 41464983 - 41464932
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattc 68  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  41464983 tgaacaaataaatcatgcaattaaaacttgtcaactgtgtcttgaaaaattc 41464932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 14941071 - 14941011
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattcataatgcta 77  Q
    ||||||||||||||||| |||||||||||| ||| ||||||||||||||||| | ||||||    
T  14941071 tgaacaaataaatcatgaaattaaaacttgccagttgtgtcttgaaaaattcttgatgcta 14941011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 28716401 - 28716341
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattcataatgcta 77  Q
    ||||||||||||| |||||||||||||||| ||| ||||||||||||||||| | ||||||    
T  28716401 tgaacaaataaataatgcaattaaaacttgccagttgtgtcttgaaaaattcttgatgcta 28716341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 13686108 - 13686168
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattcataatgcta 77  Q
    |||||||||||||||||||||||||||||| ||  |||||||| |||||||| | ||||||    
T  13686108 tgaacaaataaatcatgcaattaaaacttgccaattgtgtcttaaaaaattcttgatgcta 13686168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 58
Target Start/End: Complemental strand, 3377084 - 3377049
Alignment:
Q  23 aaataaatcatgcaattaaaacttgcagctgtgtct 58  Q
    ||||||||||||||||||||||||||| ||||||||    
T  3377084 aaataaatcatgcaattaaaacttgcaactgtgtct 3377049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 28429396 - 28429425
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg 47  Q
    ||||||||||||||||||||||||||||||    
T  28429396 tgaacaaataaatcatgcaattaaaacttg 28429425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 36690905 - 36690856
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaat 66  Q
    ||||||||||||||| | |||||||| ||| |||||||||||||||||||    
T  36690905 tgaacaaataaatcaagtaattaaaatttgtcagctgtgtcttgaaaaat 36690856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 9098653 - 9098593
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattcataatgcta 77  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||| | ||||||    
T  9098653 tgaacaaataaatcatgcaattaaaacttgtcagctgtgttttgaaaaattcttgatgcta 9098593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 47550905 - 47550966
Alignment:
Q  17 atgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattcataatgcta 77  Q
    ||||||| ||||||||||||||||||||||| ||||||| ||||||||||||| | ||||||    
T  47550905 atgaacatataaatcatgcaattaaaacttgccagctgtttcttgaaaaattcttgatgcta 47550966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 31032781 - 31032721
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattcataatgcta 77  Q
    |||||||||||||||||||||||||||||| || |||| ||||||||||||| | ||||||    
T  31032781 tgaacaaataaatcatgcaattaaaacttgtcaactgtatcttgaaaaattcttgatgcta 31032721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 34476014 - 34476065
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattc 68  Q
    ||||||||| |||||||||||||||||||| ||||| |||||||||||||||    
T  34476014 tgaacaaatcaatcatgcaattaaaacttgtcagctttgtcttgaaaaattc 34476065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 45010314 - 45010374
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattcataatgcta 77  Q
    |||||||||||||||||||||||||| ||| ||| ||||| ||||||||||| | ||||||    
T  45010314 tgaacaaataaatcatgcaattaaaatttgtcagatgtgttttgaaaaattctttatgcta 45010374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 1270286 - 1270336
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaatt 67  Q
    |||| ||||||||| ||||||||||||||| || |||||||||||||||||    
T  1270286 tgaataaataaatcgtgcaattaaaacttgtcaactgtgtcttgaaaaatt 1270336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 4624460 - 4624489
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg 47  Q
    ||||||||||||||||||||||||||||||    
T  4624460 tgaacaaataaatcatgcaattaaaacttg 4624489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 34808051 - 34808099
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttgc-agctgtgtcttgaaaaa 65  Q
    |||| |||||||||||||||||||||||||| || ||| ||||||||||    
T  34808051 tgaataaataaatcatgcaattaaaacttgctagttgtctcttgaaaaa 34808099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 42480235 - 42480298
Alignment:
Q  17 atgaacaaataaatcatgcaattaaaacttgca-gctgtg--tcttgaaaaattcataatgcta 77  Q
    ||||| |||||||| |||||||||||||||||| ||||||  ||||||||||||| | ||||||    
T  42480235 atgaataaataaattatgcaattaaaacttgcatgctgtgtctcttgaaaaattcttgatgcta 42480298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 27425837 - 27425787
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaatt 67  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||    
T  27425837 tgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaatt 27425787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 23992034 - 23991983
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaattc 68  Q
    |||||||| | ||||||||||||||||||| ||| |||||||||||||||||    
T  23992034 tgaacaaaaatatcatgcaattaaaacttgtcagttgtgtcttgaaaaattc 23991983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 8307637 - 8307687
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaacttg-cagctgtgtcttgaaaaatt 67  Q
    ||||||||||||||||||| |||||| ||| ||| ||||||||||||||||    
T  8307637 tgaacaaataaatcatgcagttaaaatttgccagttgtgtcttgaaaaatt 8307687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 22326973 - 22327001
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaactt 46  Q
    |||||||||||||||||||||||||||||    
T  22326973 tgaacaaataaatcatgcaattaaaactt 22327001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 42195492 - 42195520
Alignment:
Q  18 tgaacaaataaatcatgcaattaaaactt 46  Q
    |||||||||||||||||||||||||||||    
T  42195492 tgaacaaataaatcatgcaattaaaactt 42195520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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